New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5454984 = | NA (NA) | 11 (0.510) | 3/258 | 1.3 | 31.1% | intergenic (+27/‑328) | lnt/PP_4791 | apolipoprotein N‑acyltransferase/transposase |
? | NC_002947 | = 5456680 | 25 (1.130) | intergenic (+40/+121) | PP_4791/PP_4792 | transposase/hypothetical protein |
GCGCTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGG > NC_002947/5454876‑5455090 | gcgcTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTgg > 2:121161/1‑135 (MQ=255) cgcTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTc < 2:502201/136‑1 (MQ=255) tCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTcgcg < 1:253340/136‑1 (MQ=255) gggcGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACg < 1:377165/136‑1 (MQ=255) gTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCGGTGGCGCCGCAAACAAGAGGGGTTCGGCGTGAGTTGCgccgcgccgcggg > 1:365382/1‑133 (MQ=21) cAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGc < 1:121161/136‑1 (MQ=255) tGATTGACGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCGGTGGCGCCGCCAACATGAGGTGTTCCGGGTGAGGTGCGCCGCGGCGCGGCCAATTTTTAAAAAAAAAAGCCGTTTGCCCgg > 2:543042/1‑136 (MQ=9) | GCGCTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGG > NC_002947/5454876‑5455090 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |