New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2474067 = | 5 (0.230) | 17 (1.100) | 8/186 | 0.4 | 83.9% | intergenic (+6/+143) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
? | NC_002947 | 2474191 = | 3 (0.190) | intergenic (+130/+19) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
TACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATT > NC_002947/2474103‑2474320 | TACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGCGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCt < 2:124052‑M1/136‑1 (MQ=255) TACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATAAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGACCGGTTTTTAAACTCTGTAgcca < 1:528580‑M1/136‑2 (MQ=255) ggggtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAg > 1:159822‑M2/77‑136 (MQ=255) cgcCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAg > 2:413025/1‑136 (MQ=255) gggtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGc > 1:371228‑M2/76‑136 (MQ=255) ggtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAgcc > 1:52268‑M2/75‑135 (MQ=255) gtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctGt > 1:128592‑M2/74‑75 (MQ=255) gtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctGt < 2:128592‑M2/2‑1 (MQ=255) gtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTa < 2:531567‑M2/44‑1 (MQ=255) gtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTa > 1:531567‑M2/74‑117 (MQ=255) gtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGcaa > 1:93402‑M2/74‑135 (MQ=255) gtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCAt > 1:153296‑M2/74‑136 (MQ=255) gtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCAt > 1:446113‑M2/74‑136 (MQ=255) gtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCAt > 1:445544‑M2/74‑136 (MQ=255) gtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCAt > 1:346838‑M2/74‑136 (MQ=255) gtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCAt > 1:186597‑M2/74‑136 (MQ=255) gtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCAt > 1:156726‑M2/74‑136 (MQ=255) tggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATc > 1:520654‑M2/73‑136 (MQ=255) aggacacacatttatgttttgtataatgccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATc > 1:180497‑M2/73‑136 (MQ=255) aaatttggtgtttgggcgcaggcggtcgtaggagggggtttccccgctaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTg < 2:93402‑M2/70‑1 (MQ=255) tgtgtCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTacac > 2:273502/1‑136 (MQ=255) aGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCt > 1:10437/1‑136 (MQ=255) agcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCaa > 1:185735‑M2/35‑136 (MQ=255) gcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCaaa > 1:439434‑M2/34‑136 (MQ=255) cgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAAct > 1:263474‑M2/33‑71 (MQ=255) cgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAAct < 2:263474‑M2/39‑1 (MQ=255) cgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCaaaa > 1:563280‑M2/33‑136 (MQ=255) gggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCaaaaa > 1:538536‑M2/32‑136 (MQ=255) ggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCaaaaaa > 1:435564‑M2/31‑136 (MQ=255) cgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTc > 1:257011‑M2/23‑136 (MQ=255) gccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCgg < 1:124052‑M2/123‑1 (MQ=255) caggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCAtt < 2:446113‑M2/130‑1 (MQ=255) | TACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATT > NC_002947/2474103‑2474320 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |