| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,617,824 | 0 | C | G | 40.0% | 11.3 / 24.5 | 20 | intergenic (‑37/+136) | PP_1417/PP_1418 | tricarboxylate transport protein TctB/tricarboxylate transport protein TctC |
| Reads supporting (aligned to +/- strand): ref base C (2/10); new base G (4/4); total (6/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.66e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCATCACGGCCAGGGCGGCACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCG > NC_002947/1617697‑1617883 | ccaTCACGGCCAGGGCGGCACACCACGCCAGCTGGGCCAAGGCGAATATGCGTTGATGGATCATTGGGGAATCCTCGCTGGGATTGCTCAAGTGAAATGCAAATGCTGTGGGAGCGGCCTTGCGTCGCGATCGGgc < 2:378896/136‑1 (MQ=255) cACGGCCAGGGCGGCACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGTATTGCTCAAGTGAATTGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGa < 1:213085/136‑1 (MQ=255) aCGGCCAGGGCGGCACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGaa < 1:482935/136‑1 (MQ=255) gCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGAt < 2:96616/136‑1 (MQ=255) gCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGAt < 2:354330/136‑1 (MQ=255) gCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAg < 1:182886/136‑1 (MQ=255) gCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAg < 1:185866/136‑1 (MQ=255) gTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg < 2:403236/136‑1 (MQ=255) ccTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGa > 1:462549/1‑68 (MQ=255) ccTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGa < 2:462549/68‑1 (MQ=255) ggAGCGGCCTTGTGTCGGGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg < 1:270262/77‑1 (MQ=255) ggAGCGGCCTTGTGTCGGGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg > 2:16325/1‑77 (MQ=255) ggAGCGGCCTTGTGTCGGGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg < 2:191724/77‑1 (MQ=255) ggAGCGGCCTTGTGTCGGGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg > 2:270262/1‑77 (MQ=255) ggAGCGGCCTTGTGTCGGGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg > 1:191724/1‑77 (MQ=255) ggAGCGGCCTTGTGTCGGGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg < 1:16325/77‑1 (MQ=255) ggAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTg < 1:371665/35‑1 (MQ=255) ggAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTg > 2:371665/1‑35 (MQ=255) gCGGCCTTGTGTCGGGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATc > 1:467588/1‑73 (MQ=255) gCGGCCTTGTGTCGGGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATc < 2:467588/73‑1 (MQ=255) | CCATCACGGCCAGGGCGGCACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCG > NC_002947/1617697‑1617883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |