Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	4,947,381	0	A	G	22.2%	161.0 / 46.9	91	intergenic (+774/+24)	PP_5673/flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
Reads supporting (aligned to +/- strand):  ref base A (51/19);  new base G (13/7);  total (65/26)
Fisher's exact test for biased strand distribution p-value = 5.78e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.32e-01
Rejected as consensus: Frequency below/above cutoff threshold.

TATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACA  >  NC_002947/4947261‑4947502                                                                                                                         |                                                                                                                          tatTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGc                                                                                                            >  2:458424/1‑136 (MQ=255)       gcCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCCCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGcaca                                                                                                      >  1:292038/1‑136 (MQ=255)                        gTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGCACAGATCAACTGTCgcggcg                                                                                     >  1:205759/1‑136 (MQ=255)                        gTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCCAACACATCAACAGTCgcggcg                                                                                     >  1:146940/1‑136 (MQ=255)                        gTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGAGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCgcggcg                                                                                     >  1:48891/1‑136 (MQ=255)                            cgcgcgcCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAgg                                                                                 >  1:334223/1‑136 (MQ=255)                            cgcgcgcCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAgg                                                                                 >  2:288496/1‑136 (MQ=255)                             gcgcgcCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGt                                                                                >  1:281664/1‑136 (MQ=255)                                            gaataaCTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGCTCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCa                                                                 >  1:376539/6‑136 (MQ=255)                                            gaataaCTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCAAACAGGCAACGCAAACCAAAAGCCGAACACAACAAAAGTCGCGGCGCAGGTCCCGCGGGAACGGCa                                                                 >  2:338741/6‑136 (MQ=17)                                              ataaCTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTAACGCCGAAAAGATAAACAGTCGCGGCGCAGGTCCGGCGGGAACGGCAgg                                                               >  1:129522/4‑136 (MQ=14)                                                 aCTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGgtcg                                                            <  2:281664/136‑1 (MQ=255)                                                    ggCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATAGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTcc                                                         >  1:261144/1‑136 (MQ=255)                                                       ccGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTc                                                      >  1:367134/1‑136 (MQ=255)                                                        cGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAAc                                                                                                       >  1:265779/1‑86 (MQ=255)                                                        cGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAAc                                                                                                       <  2:265779/86‑1 (MQ=255)                                                         gAAACAAATGTAGGAGTGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  2:383209/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCTCGGGCGGCGCTGGATATCACACGCGACAAAAACCAATAGCCGCACAGAACAAATGTCGCGGCGCAGGTACGGCGGGATCGGCAGGTCGTCCATCAg                                                    >  2:36808/1‑136 (MQ=18)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTTGATCTCACAGGCAACGCAAACCTATAGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  1:297873/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGCTCTCACAGGCAACGCCAACCAATAGCCGAACAGCTCAACAGTCGCGGCGCAGGTCCCGCGGGATCCGCATGTCGTCCATCAg                                                    >  1:344496/1‑136 (MQ=21)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTCACGGCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCATCAg                                                    >  1:520938/1‑136 (MQ=17)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTATCGCCGAACAGATCAACTGt                                                                                            <  2:387773/96‑1 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTATCGCCGAACAGATCAACTGt                                                                                            >  1:387773/1‑96 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGgtcg                                                            <  1:58091/128‑1 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGgtcg                                                            >  2:58091/1‑128 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCat                                                    >  1:30239/1‑135 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  1:451470/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGc                                                                                                            <  1:294414/80‑1 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGc                                                                                                            >  2:294414/1‑80 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGa                                                                                                    <  1:381965/88‑1 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGa                                                                                                    >  2:381965/1‑88 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  1:540988/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  1:523634/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  2:60728/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  1:519709/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  1:562083/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  1:583827/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  1:63803/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  2:220044/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  2:553950/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  2:552604/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  2:515275/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  2:454754/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  1:455409/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  1:283959/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  1:236935/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  1:233569/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  1:219503/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  1:41341/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  1:175944/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  1:453143/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  1:167539/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTAGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  2:329948/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACAGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  2:217420/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCCAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  1:196324/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATAGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  2:226764/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCAATCGCCGAACAGATCAAAAGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGGCCTTCAg                                                    >  2:553187/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCGCGATCTCACAGGCAACGCAAACCTATCCCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAg                                                    >  1:16885/1‑136 (MQ=255)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCCGGCGGCGCTCGATCTAACAGGCGCCAAAAACCAATAGCCGAACAGATCAACTGTCGCGGCGGAGGTACGGCGGGATAGGCAGGTcgtccgtccg                                                    >  1:264519/1‑134 (MQ=18)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCCGGCGGCGCACGATCTGACAGGCAACGCAAACCTATCGCCGAACAGATCAACAGTCGCGGCCCACGTCCGGCGGGAACGGCAGGTCGTCCGTCAg                                                    >  1:14624/1‑136 (MQ=25)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCCCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCAATAGCCGAACAGATCAACAGTCGCCGCGCAGGTCCGGCGGGATCGGCCGGTCGTCCTTCAg                                                    >  2:347946/1‑136 (MQ=25)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCCCGCGGGCGGCGCTCGATATCACAGGCGACAAAAACCAATAGCCCAACAGATAAACATTAGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCATCaa                                                    >  1:337826/1‑135 (MQ=17)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCCCGCGGGCGGCGCTCGAACTCACAGGCCACGCAAACCTATAGCCGAACAGATAAACTGTCGCGGCGCACGTCCGGCGGGATCGGCAGGTCGGCCTTCAg                                                    >  2:471025/1‑136 (MQ=25)                                                         gAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCCCCGCGCGGGCGGCGCTCGATATCACAGGCGACAAAAACCAAACGCCCAACAGATAAACTGTCGCCGCGCAGGTCCCGCCGGATCGGCAGGGAGTccataaa                                                    >  1:71790/1‑131 (MQ=17)                                                         gAAACAAAAGTAGGAGCGAGCTTGCTCGCGATGCGCCCCCCGGGCGGCGCTCGATATAACATGCAACGCAAACCAATAGCCGAACAGAACAACTGTAGCGGCGCAGGTAAGGCGGGATACGCAGGTAGTCCttaaa                                                    >  2:317823/1‑133 (MQ=18)                                                          aaaCAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGt                                                   >  1:440544/1‑136 (MQ=255)                                                          aaaCAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGt                                                   >  1:173285/1‑136 (MQ=255)                                                              aaaTGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGct                                               <  1:288496/136‑1 (MQ=255)                                                              aaaTGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGct                                               <  1:217420/136‑1 (MQ=255)                                                                   tAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTggg                                          <  1:454754/136‑1 (MQ=255)                                                                   tAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTggg                                          >  1:263675/1‑136 (MQ=255)                                                                   tAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTggg                                          <  2:334223/136‑1 (MQ=255)                                                                   tAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTggg                                          <  2:562083/136‑1 (MQ=255)                                                                            gcTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGcttgccc                                 >  1:386152/1‑136 (MQ=255)                                                                            gcTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGcttgccc                                 >  1:439745/1‑136 (MQ=255)                                                                              ttGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGcttgccctt                               <  1:174359/136‑1 (MQ=255)                                                                                gCTCGCGATGGGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGcttgcccttgc                             <  1:338741/136‑1 (MQ=255)                                                                                gCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTCACGGCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGcttgcccttgc                             <  2:520938/136‑1 (MQ=25)                                                                                gCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGACAAAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGcttgcccttgc                             <  2:367134/136‑1 (MQ=255)                                                                                gCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGcttgcccttgc                             <  1:553950/136‑1 (MQ=255)                                                                                gCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGcttgcccttgc                             <  1:515275/136‑1 (MQ=255)                                                                                gCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGcttgcccttgc                             <  2:439745/136‑1 (MQ=255)                                                                                gCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGcttgcccttgc                             <  2:233569/136‑1 (MQ=255)                                                                                gCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGcttgcccttgc                             >  1:289067/1‑136 (MQ=255)                                                                                  tCGCGATGCGCCGAGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCg                           <  2:48891/136‑1 (MQ=255)                                                                                                          cTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAac   <  2:263675/136‑1 (MQ=255)                                                                                                           tCGATCTCACAGGCGACAAAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAaca  <  2:451470/136‑1 (MQ=255)                                                                                                           tCGATCTCACAGGCGACAAAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAaca  <  1:81059/136‑1 (MQ=255)                                                                                                           tCGATCTCACAGGCGACAAAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAaca  <  2:337826/136‑1 (MQ=255)                                                                                                           tCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAaca  <  2:455409/136‑1 (MQ=255)                                                                                                           tCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAaca  <  2:219503/136‑1 (MQ=255)                                                                                                                         |                                                                                                                          TATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACA  >  NC_002947/4947261‑4947502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑