| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,429 | Δ1 bp | 6.0% | intergenic (‑47/+42) | trmE ← / ← oxaA | GTPase/membrane protein insertase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,429 | 0 | A | . | 6.0% | 963.6 / 51.0 | 284 | intergenic (‑47/+42) | trmE/oxaA | GTPase/membrane protein insertase |
| Reads supporting (aligned to +/- strand): ref base A (128/139); new base . (10/7); total (138/146) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 288 total aligned reads displayed.
GGCCGGCCTTGGCAGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCACCAGACCGGCAGG > NC_002947/6280‑6578 | gccggccTTGGCAGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAATCGCCCCAc > 2:8490360/1‑150 (MQ=255) cggccTTGGCAGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTa > 1:697374/1‑150 (MQ=255) ccTTGGCAGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAg‑gg < 2:3353607/150‑1 (MQ=255) cTTGGCAGCCTGAGGGCCGGAAAACCTGAAAATTCCCACACCGCCCCGGCCCTGGGCGGTGGGTATGGGGGCTTTGGTTTCACGAACAGTGTTCTTGCTCTAAAGCCTCTACGAAAAAAACGACAGATAGCAAACACGCCCCACTAg‑ggg < 1:82185/150‑1 (MQ=255) cTTGGCAGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAg‑ggg > 1:1543003/1‑150 (MQ=255) cTTGGCAGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAg‑ggg < 1:4485766/150‑1 (MQ=255) cTTGGCAGCAAGTGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCGGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAg‑ggg < 1:8866482/150‑1 (MQ=255) ttGGCAGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAg‑gggg > 1:7369096/1‑150 (MQ=255) tGGCAGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGc < 2:2798598/150‑1 (MQ=255) cAGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCCTGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCC‑CTAGTGGGGCGtt < 2:4050503/150‑1 (MQ=255) aGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCC‑CTAGTGGGGCGttt < 2:1017287/150‑1 (MQ=255) gCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGtttt > 1:1292833/1‑150 (MQ=255) gCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGtttt < 2:7515708/150‑1 (MQ=255) gCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGtttt < 1:3755413/150‑1 (MQ=255) gCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTATACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGtttt < 1:5302915/150‑1 (MQ=255) ccAGAGGGCCGGACAACCTGACACTTCCCACACCGCCCCGGCCCTGGGCCGTGGCGAGGGCGGCGAGGGTGTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCC‑CTAGTGGGGCGttttt < 2:1964964/150‑1 (MQ=255) cAGCGGGCCGGACAACCGGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGCTGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATCGCAAAAACGCCCC‑CTAGTGGGGCGtttttg < 1:58147/150‑2 (MQ=255) cAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGtttttt < 2:3934664/150‑1 (MQ=255) agagGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACCGTGTTCATGCTCGAACGCCTCTACGACAAAAACGACAGATAGCAAACACGCCCCACTAG‑GGGGCGTTTTTTa < 1:8759984/150‑1 (MQ=255) agagGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTa < 2:7430004/150‑1 (MQ=255) gagGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTAt < 1:6764374/150‑1 (MQ=255) gggCCGGCCAACCTGACAATGCCCACACCGCCCCGGCCCTGGGCCGGGGCGATGGGGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTCCCACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTc < 1:1788655/150‑1 (MQ=255) cGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAg > 2:7576805/1‑150 (MQ=255) ggACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACTACCCACTAG‑GGGGCGTTTTTTATTCACAgg > 2:6958652/1‑150 (MQ=255) aaCCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAGAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAg > 2:5123742/1‑150 (MQ=255) cTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGt > 1:3814508/1‑150 (MQ=255) tGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTa < 2:310842/150‑1 (MQ=255) gACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTAt > 1:2619644/1‑150 (MQ=255) gACAAGTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCTATGGTTTCACGCACTGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTAt < 1:7735425/150‑1 (MQ=255) aaTTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAg > 1:9144893/1‑150 (MQ=255) aaTTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAg > 2:4183354/1‑150 (MQ=255) tcgcccACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGc > 1:8931769/4‑150 (MQ=255) tCCCACACCGCCCCGGCCCTGGGCCGTGGCGAGGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACTGATAGCAAACACGCCCCACTAG‑GGGGCGTTTTTTTTTCACAGGCTAGCGTATTAGccc < 2:2346529/150‑1 (MQ=255) ccccACACCGCCCCGGCCGTGGGCCGTGGCTCTGGCGGCGTTGTTTTCACGCACTGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGccc < 1:827475/149‑1 (MQ=255) ccACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGt > 1:3155194/1‑150 (MQ=255) cacaCCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACACAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTGTATTCACAGGCTCGCGTATTAGCCCGTc > 2:6198388/1‑150 (MQ=255) cacaCCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTc < 1:5203601/150‑1 (MQ=255) acacCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCa > 2:7964159/1‑150 (MQ=255) cccccccGCCCGTGGGCCGTGGCGAGGGGGGCTATTGTTTCACGCAAAGTGTTAAGGCTCGAACGCATAACCGACAAAAACTACCGATAGAAACAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAagc < 1:2265359/147‑1 (MQ=255) cGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAACACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAagca < 2:6528252/150‑1 (MQ=255) ccccGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAagcagc < 2:5331205/150‑1 (MQ=255) ccccGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAagcagc > 1:7269771/1‑150 (MQ=255) ccacGGCCCAGGGCCGGGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAagcagc > 2:5188989/4‑150 (MQ=255) ccacGGCCCAGGGCCGGGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAagcagc > 2:5805090/4‑150 (MQ=255) ccGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAagcagcag < 2:4933302/150‑1 (MQ=255) cGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAagcagcagc > 2:1385070/1‑150 (MQ=255) ccTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAACCCTCTACGACAAAAACCACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCtttt < 2:204803/150‑1 (MQ=255) cTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCttttt > 2:3574124/1‑150 (MQ=255) gggCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTg < 1:3970619/150‑1 (MQ=255) ggCCGTGGCGATGGCGGCGATGTTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAACACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTgg < 1:4801554/150‑1 (MQ=255) ccGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTa > 2:7054144/1‑150 (MQ=255) ccGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTATACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTa < 1:277220/150‑1 (MQ=255) cGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAg > 1:4700842/1‑150 (MQ=255) cGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAgctgct > 1:3241637/1‑150 (MQ=255) gATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCtt < 2:6397880/150‑1 (MQ=255) aTGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTc < 1:8672927/150‑1 (MQ=255) aTGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTc < 1:2218330/150‑1 (MQ=255) ggcggcGATGGTTTCACGCCCAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAACAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGa < 2:8137286/150‑1 (MQ=255) ggcggcGATGGTTACACGCACAGTGTTCATCCTCGAAAGCCTCTACCAAAAAAACCACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGa < 1:1075143/150‑1 (MQ=255) gATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGc > 1:3435593/1‑150 (MQ=255) tGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGa < 2:8780701/150‑1 (MQ=255) tGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGa < 2:3212288/150‑1 (MQ=255) tCACGCACAGTGTTCATGCTCGCAAGCCTCTCCGACAAAACCGACAGATAGCAACAACGCCCCACGAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGAt < 2:1775869/150‑1 (MQ=255) gCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTAc > 1:5542667/1‑150 (MQ=255) acaGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCa > 2:4784095/1‑150 (MQ=255) ttCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCActgctg > 2:7994136/1‑150 (MQ=255) aTGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACATGCTAGCGTATTATCCCGTCAAGCAGCAGCTTTTTTTGTAGCTTCTTCGATACGGCGAGTGATGTACCACTGCTGCGa > 1:61291/1‑150 (MQ=255) tCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATc < 2:2413130/150‑1 (MQ=255) tCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATc > 1:4249164/1‑150 (MQ=255) tCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATc > 1:6074038/1‑150 (MQ=255) tCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATc < 2:7927890/150‑1 (MQ=255) aaaGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCTCAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGAc < 2:1543003/150‑1 (MQ=255) aGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAg < 1:3329290/150‑1 (MQ=255) tctACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAg < 2:8889929/150‑1 (MQ=255) tACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAgtt > 2:3240637/1‑150 (MQ=255) gACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAgttgtt < 1:4061100/150‑1 (MQ=255) gACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAgttgtt > 1:848369/1‑150 (MQ=255) aaaaaCGACAGATAGCAAAAACGCCCCACTCG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTcac > 2:2439876/1‑150 (MQ=255) cGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAAccc > 1:2025960/1‑150 (MQ=255) gACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCa < 1:303986/150‑1 (MQ=255) gACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCa > 1:6399956/1‑150 (MQ=255) gACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCa < 2:3814508/150‑1 (MQ=255) gACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCa > 2:3618419/1‑150 (MQ=255) gACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGGATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAAcccc > 2:5486982/1‑149 (MQ=255) cacacATACCAAAAACCCCCCACTAG‑GGGGCGTATAAAAATCACAGGCTACCGTATTAGCCCGTCAACCAGCAGCAAATTTGGTAGCTGCTTCGATACGGCGAGAGATGTACCACTGCTGCGAAATCGACACGCAGTTCTTCACAACCCa < 2:8349296/149‑1 (MQ=255) aGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTa > 2:1915914/1‑150 (MQ=255) tAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTca < 1:1469884/137‑1 (MQ=255) tAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAg > 2:8561332/1‑150 (MQ=255) cAAACACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCAc < 2:9044298/150‑1 (MQ=255) aaaaaCGCCCC‑CTAGTGGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCAcc > 1:7443525/1‑150 (MQ=255) aaaCGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCACCAg > 1:8233278/1‑150 (MQ=255) aaaCGCCCC‑CTAGTGGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCACCAg > 2:7270208/1‑150 (MQ=255) aaaCGCCCC‑CTAGTGGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCACCAg > 2:2949394/1‑150 (MQ=255) aaCGCCCC‑CTAGTGGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTAACACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCACCAGa > 1:7097587/1‑150 (MQ=255) gCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCACCAGACCg > 1:7183190/1‑150 (MQ=255) gCCCCACGAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCACCAGACCg < 1:3912645/150‑1 (MQ=255) ccccACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCACCAGACCgg > 2:1213623/1‑150 (MQ=255) cACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCa > 1:3621002/1‑115 (MQ=255) cACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCACCAGACCGGCAg < 1:5406737/150‑1 (MQ=255) aCTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAATACAGCACCAGACCGGCAgg < 2:5736379/150‑1 (MQ=255) | GGCCGGCCTTGGCAGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCACCAGACCGGCAGG > NC_002947/6280‑6578 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |