New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1838122	185 (0.670)	16 (0.060)	10/256	NT	7.2%	intergenic (+27/+77)	PP_1642/PP_1643	hypothetical protein/membrane protein
	?	NC_002947	= 1838184	240 (0.940)					intergenic (+89/+15)	PP_1642/PP_1643	hypothetical protein/membrane protein

ATCGACAAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1837967‑1838122 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaCGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAATGGGAGCAACACAAGGCTCAATGGTTGACGGTGTGCGCCAGCATCACCGACAACTGGCACAGCGGCCGCCCGCTCTC  <  NC_002947/1838184‑1838036                                                                                                                                                                                                                                                                                                                   ATCGACAAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCG                                                                                                                                                             >  2:5303618/1‑150 ATCGACAAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCG                                                                                                                                                             >  2:5303533/1‑150  TCGACAAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGC                                                                                                                                                            >  1:1149886/1‑150  TCGACAAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGC                                                                                                                                                            >  1:1149769/1‑150  TCGACAAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGC                                                                                                                                                            <  1:6673776/150‑1    GACAAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGG                                                                                                                                                          <  2:5457881/150‑1    GACAAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGG                                                                                                                                                          <  1:4960520/150‑1    GACAAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGG                                                                                                                                                          <  2:7953344/150‑1     ACAAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGG                                                                                                                                                         >  1:5276392/1‑150       AAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCA                                                                                                                                                       >  1:8282754/1‑150       AAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCA                                                                                                                                                       >  1:9020109/1‑150       AAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCA                                                                                                                                                       >  1:7850384/1‑150       AAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCA                                                                                                                                                       >  1:6023772/1‑150                                    TCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCC                                                                                                                          >  2:6273500/1‑150                                                       AACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTAC                                                                                                       <  1:6635131/150‑1                                                       AACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTAC                                                                                                       >  1:7058675/1‑150                                                       AACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTAC                                                                                                       <  1:7974025/150‑1                                                          CAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGT                                                                                                    <  2:6707889/150‑1                                                          CAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGT                                                                                                    <  2:6707670/150‑1                                                          CAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGT                                                                                                    <  1:6956983/150‑1                                                          CAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGT                                                                                                    <  1:6273500/150‑1                                                           AGTGGCATGCAGAGCGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTG                                                                                                   <  1:7404477/150‑1                                                                  TGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGG                                                                                            <  2:6749511/150‑1                                                                            GGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGTGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGC                                                                                  <  2:633085/150‑1                                                                               CGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTTGCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAA                                                                               <  1:211682/150‑1                                                                                                                                            GCTCCCATTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGC                                                                                              >  1:4599093/1‑74                                                                                                                                            GCTCCCATTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGC                                                                                              <  2:4599093/74‑1                                                                                                                                            GCTCCCATTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGC                                                                                              <  2:4599267/74‑1                                                                                                                                            GCTCCCATTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGC                                                                                              >  1:4599267/1‑74                                                                                                                                              TCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAATGGGAGCAACACAAGGCTCAATGGTTGACGGTGTGCGCCAGCATCACCGACAACTGGCACAGC                >  2:6953483/1‑150                                                                                                                                                CCATTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGT                                                                                                    >  2:6587511/1‑64                                                                                                                                                CCATTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGT                                                                                                    <  1:6587511/64‑1                                                                                                                                                   TTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCGTAAGTGCGGTGCGCTTACGGTGGGCGCGGGCATTCCCGCGAAGGGGAGCAACACAAGGCTCAATGGTTGACGGTGTGCGCCAGCAACACCGACCACAGGCACACCGGCCc           >  1:8863334/1‑149                                                                                                                                                    TCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAATGGGAGCAACACAAGGCTCAATGGTTGACGGTGTGCGCCAGCATCACCGACAACTGGCACAGCGGCCGC          <  2:7308188/150‑1                                                                                                                                                    TCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAATGGGAGCAACACAAGGCTCAATGGTTGACGGTGTGCGCCAGCATCACCGACAACTGGCACAGCGGCCGC          <  2:7308537/150‑1                                                                                                                                                    TCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAATGGGAGCAACACAAGGCTCAATGGTTGACGGTGTGCGCCAGCATCACCGACAACTGGCACAGCGGCCGC          <  2:2745289/150‑1                                                                                                                                                    TCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAATGGGAGCAACACAAGGCTCAATGGTTGACGGTGTGCGCCAGCATCACCGACAACTGGCACAGCGGCCGC          <  2:7308698/150‑1                                                                                                                                                      GCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAATGGGAGCAACACAAGGCTCAATGGTTGACGGTGTGCGCCAGCATCACCGACAACTGGCACAGCGGCCGCCC        <  1:4932016/150‑1                                                                                                                                                      GCGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAATGGGAGCAACACAAGGCTCAATGGTTGACGGTGTGCGCCAGCATCACCGACAACTGGCACAGCGGCCGCCC        <  1:4932150/150‑1                                                                                                                                                      GCGGGCACGCCCGCTCCCACAGGTAATGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGATCGGGCAAGCCCGCGAATGGGAGCAACACAACGCACAATGGTTTACGGTTTGCGCCAGCATCACCCACAACATGCACAGCGGCCGCCC        >  2:3016626/1‑150                                                                                                                                                       CGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAATGGGAGCAACACAAGGCTCAATGGTTGACGGTGTGCGCCAGCATCACCGACAACTGGCACAGCGGCCGCCCG       >  2:1997711/1‑150                                                                                                                                                       CGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAATGGGAGCAACACAAGGCTCAATGGTTGACGGTGTGCGCCAGCATCACCGACAACTGGCACAGCGGCCGCCCG       >  2:6630442/1‑150                                                                                                                                                       CGGGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAATGGGAGCAACACAAGGCTCAATGGTTGACGGTGTGCGCCAGCATCACCGACAACTGGCACAGCGGCCGCCCG       >  2:6630337/1‑150                                                                                                                                                         GGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAATGGGAGCAACACAAGGCTCAATGGTTGACGGTGTGCGCCAGCATCACCGACAACTGGCACAGCGGCCGCCCGCT     >  2:1156281/1‑150                                                                                                                                                         GGCACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAATGGGAGCAACACAAGGCACAATCGTTGACGGTGTGCGCCAGCATCACCGACAACAGGCACACCGGCCGCCCGCT     >  1:7078926/1‑150                                                                                                                                                           CACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAATGGGAGCAACACAAGGCTCAATGGTGGACGGTGTGCGCCAGCATCACCGACAACTGGCACAGCGGGCGGCCGCTgt   <  2:882894/150‑3                                                                                                                                                            ACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAATGGGAGCAACACAAGGCTCAATGGTTGACGGTGTGCGCCAGCATCACCGACAACTGGCACAGCGGCCGCCCGCTCTC  >  2:4179894/1‑150                                                                                                                                                            ACGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAATGGGAGCAACACAAGGCTCAATGGTTGACGGTGTGCGCCAGCATCACCGACAACTGGCACAGCGGCCGCCCGCTCTC  >  2:4179175/1‑150                                                                                                                                                                                                                                                                                                                   ATCGACAAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGCGCACACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1837967‑1838122 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaCGCCCGCTCCCACAGGTACTGCACAGGCCTTAAGTGCGGTGCGATTACTGTGGGAGCGGGCATGCCCGCGAATGGGAGCAACACAAGGCTCAATGGTTGACGGTGTGCGCCAGCATCACCGACAACTGGCACAGCGGCCGCCCGCTCTC  <  NC_002947/1838184‑1838036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.