New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1970795	184 (0.670)	22 (0.080)	9/266	NT	10.0%	intergenic (+46/‑220)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
	?	NC_002947	= 1970831	218 (0.820)					intergenic (+82/‑184)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region

GTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1970642‑1970795 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccac‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGGCGCTCGACGATGCC  <  NC_002947/1970831‑1970684                                                                                                                                                                                                                                                                                                                  GTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTC                                                                                                                                                            >  1:4333136/1‑150   AACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCGTGCCCGCTCCC                                                                                                                                                          >  1:3485090/1‑150   AACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCGTGCCCGCTCCC                                                                                                                                                          >  1:3485576/1‑150    ACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCA                                                                                                                                                         <  1:5350509/150‑1     CGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCAC                                                                                                                                                        >  1:2943200/1‑150      GCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCGTGCCCGCGCCCcct                                                                                                                                                       >  1:5001936/1‑147          GCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCGCCCccggggt                                                                                                                                                   >  1:3936941/1‑143             GACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCGTCGCGGGCGTGCCCGCTCCCAC‑AGGgatag                                                                                                                                               >  1:4233523/1‑145                                           GGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGT                                                                                                                <  2:9132021/150‑1                                           GGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGT                                                                                                                <  1:716332/150‑1                                            GCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTG                                                                                                               <  1:7235218/150‑1                                                 GTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGC                                                                                                          <  2:5734012/150‑1                                                 GTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGC                                                                                                          <  1:8420843/150‑1                                                  TCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCG                                                                                                         <  2:785818/150‑1                                                  TCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAG                                                                                                                 >  2:821868/1‑142                                                  TCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAG                                                                                                                 <  1:821868/142‑1                                                   CGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCCCCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGG                                                                                                        <  1:6830551/150‑1                                                   CGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTCGCCCGCCGCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGG                                                                                                        <  1:4416334/150‑1                                                   CGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGG                                                                                                        <  2:2943200/150‑1                                                      GCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGG                                                                                                       <  2:7754976/150‑1                                                       CGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAA                                                                                                    <  2:8233284/150‑1                                                       CGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAA                                                                                                    <  2:7691250/150‑1                                                       CGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAA                                                                                                    <  2:7691264/150‑1                                                       CGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGGATCGCCTCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAA                                                                                                    <  2:8970373/150‑1                                                         CCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGC                                                                                                  <  1:8695020/150‑1                                                           CGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCC                                                                                                <  2:8012534/150‑1                                                           CGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCC                                                                                                <  2:8998904/150‑1                                                            GGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCG                                                                                               <  2:4221650/150‑1                                                                                                      GCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCAC‑TGGTTCAC‑CACGGCCCTAAGGCCATGCGATATC                                                                                                                     <  2:8307814/86‑1                                                                                                      GCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCAC‑TGGTTCAC‑CACGGCCCTAAGGCCATGCGATATC                                                                                                                     >  1:8307814/1‑86                                                                                                                                                      CCCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGGCGCTCGACGAT     >  1:7365517/1‑150                                                                                                                                                       cccC‑AGGTCCAC‑CACGCCCCTAAGGCCAGGCGATATCCCCGTGGGAGCGGGCACGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGGCGCTCGACGATG    <  1:7300819/147‑1                                                                                                                                                       CCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGGCGCTCGACGATG    >  1:1039298/1‑150                                                                                                                                                       CCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGGCGCTCGACGATG    >  1:6106966/1‑150                                                                                                                                                       CCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGGCGCTCGACGATG    >  1:4183055/1‑150                                                                                                                                                       CCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGGCGCTCGACGATG    >  1:4182924/1‑150                                                                                                                                                       CCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGGCGCTCGACGATG    >  1:4056562/1‑150                                                                                                                                                       CCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGGCGCTCGACGATG    >  2:9041382/1‑150                                                                                                                                                       CCAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGGCGCTCGACGATG    >  1:1039617/1‑150                                                                                                                                                        CAC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGGCGCTCGACGATGC   >  2:2359357/1‑150                                                                                                                                                         AC‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCACGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGGCGCTCGACGATGCC  <  1:1374203/150‑1                                                                                                                                                                                                                                                                                                                  GTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1970642‑1970795 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccac‑AGGTTCAC‑CACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGGCGCTCGACGATGCC  <  NC_002947/1970831‑1970684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.