| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2087393 = | 181 (0.660) | 10 (0.040) | 3/260 | NT | 5.5% | intergenic (+137/‑458) | PP_1864/PP_1865 | hypothetical protein/transposase |
| ? | NC_002947 | 2089731 = | 171 (0.660) | intergenic (+579/+339) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase | |||||
AACCAAAGCCGTCGGCTCCCCTCATCCGGCCCCTACGCTACGCTCCGGGGTCCCCTCACTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCC‑‑‑‑‑GCAAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2087546‑2087393‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagcccGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑TTTTGGTTAC‑TTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGATGCGAA > NC_002947/2089731‑2089879 AACCAAAGCCGTCGGCTCCCCTCATCCGGCCCCTACGCTACGCTCCGGGGTCCCCTCACTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCC‑‑‑‑‑GCAA < 1:8733252/150‑1AACCAAAGCCGTCGGCTCCCCTCATCCGGCCCCTACGCTACGCTCCGGGGTCCCCTCACTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCC‑‑‑‑‑GCAA < 2:8840607/150‑1AACCAAAGCCGTCGGCTCCCCTCATCCGGCCCCTACGCTACGCTCCGGGGTCCCCTCACTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCC‑‑‑‑‑GCAA < 2:4679765/150‑1AACCAAAGCCGTCGGCTCCCCTCATCCGGCCCCTACGCTACGCTCCGGGGTCCCCTCACTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCC‑‑‑‑‑GCAA > 2:6708701/1‑150AACCAAAGCCGTCGGCTCCCCTCATCCGGCCCCTACGCTACGCTCCGGGGTCCCCTCACTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCC‑‑‑‑‑GCAA < 2:6129760/150‑1AACCAAAGCCGTCGGCTCCCCTCATCCGGCCCCTACGCTACGCTCCGGGGTCCCCTCACTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCC‑‑‑‑‑GCAA > 2:6708583/1‑150 ACCAAAGCCGTCGGCTCCCCTCATCCGGCCCCTACGCTACGCTCCGGGGTCCCCTCACTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCACCC‑TCC‑‑‑‑‑GCAAG > 1:7400207/1‑150 CAAAGCCGTCGGCTCCCCTCATCCGGCCCCTACGCTACGCTCCGGGGTCCCCTCACTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCCGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCC‑‑‑‑‑GCAAGCC > 2:8037794/1‑150 CAAAGCCGTCGGCTCCCCTCATCCGGCCCCTACGCTACGCTCCGGGGTCCCCTCACTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCC‑‑‑‑‑GCAAGCC > 2:6326369/1‑150 CAAAGCCGTCGGCTCCCCTCATCCGGCCCCTACGCTACGCTCCGGGGTCCCCTCACTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCGTGACGGGCATCCATGCCCGTCACCTCCC‑TCC‑‑‑‑‑GCAAGCC > 2:335866/1‑150 CAAAGCCGTCGGCTCCCCTCATCCGGCCCCTACGCTACGCTCCGGGGTCCCCTCACTCCGGGCTTGCTCCCGGGAGGACCGCGCGGCAGGCCCCATCCGGGGGCCCAGCGCGTGACGGGCCTCCCTGCCCGTCACCTCCC‑ACC‑‑‑‑‑CCAAGCC > 2:1515245/1‑150 CAAAGCCGTCGGCTCCCCTCATCCGGCCCCTACGCTACGCTCCGGGGTCCCCTCACACCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑ACC‑‑‑‑‑GCAAGCC > 2:4109814/1‑150 CAAAGCCGTCGGCTCCCCTCATCCGGCCCCTACGCTACGCTCCGGGGTCCCCGCACGCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCAACCAGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑GCC‑‑‑‑‑GCAAGCC > 1:5943297/1‑150 AAAGCCGTCGGCTCCCCTCATCCGGCCCCTACGCTACGCTCCGGGGTCCCCTCACTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCCTCCTGGGGCCCAGCGCGTGACGGGCATCCCTGCCCGTCACCTCCC‑GCC‑‑‑‑‑GCCAGCCC > 2:1057952/1‑150 TCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCC‑‑‑‑‑GCAAGCCCTGAGTGAGGGGACCCCGGAGCGTCGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑T > 2:8894129/1‑150 CCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCC‑‑‑‑‑GCAAGCCCTGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑TT > 2:6116602/1‑150 CGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCC‑‑‑‑‑GCAAGCCCTGCGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑TTT > 1:8245985/1‑150 GGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCC‑‑‑‑‑GCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACG‑G‑TTTTt > 2:6845234/1‑149 GGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTACC‑TCC‑‑‑‑‑GCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACG‑G‑TTTTt > 1:2387737/1‑149 TCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGATGGGCATCCATGCCCGTCACCTCCCGGGA‑‑‑‑‑GCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑TGTTGGTTAC‑T > 1:2359698/1‑150 GGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCGGGA‑‑‑‑‑GCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACG‑GTTTTTGGTTCC‑TTTt > 2:2154525/1‑149 GGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCGGGA‑‑‑‑‑GCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCCAGCGTT‑TTTTGGTTAC‑TTTt > 1:6917624/1‑149 AGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑TTTTGGTTAC‑TTTG > 2:8832448/1‑150 CAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCC‑‑‑‑‑GCAAGCCCGGAGCGAGGGGACCCCGGAGCGTAGCGCAGGGGCCGGATGATGGGAGCCGACG‑GTTTTTGGTTCCTTTTTGCCACGACAAAAagg < 1:6845234/150‑4 gtatcacGCCCGGTGTGTGGGGACCCCGGTGCGTAGCGTTGGGGCCGTTTGATGGGAGCCGACG‑G‑TTTTGGTTAC‑TTGGCCCACGAAAAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGGATGAATGTCTAC < 2:7206702/143‑1 CAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑TTTTGGTTAC‑TTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGA > 1:2979879/1‑150 CAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑TTTTGGTTAC‑TTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGA > 1:7815374/1‑150 AAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑TTTTGGTTAC‑TTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGAT > 1:1628096/1‑150 AAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑TTTTGGTTAC‑TTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGAT > 2:6732943/1‑150 AAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑TTTTGGTTAC‑TTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGAT > 1:7827943/1‑150 AAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑TTTTGGTTAC‑TTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGAT > 1:7827966/1‑150 AAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑TTTTGGTTAC‑TTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGAT > 2:2180847/1‑150 GCCGGGGGTGGGGGCACCCGGCTGCGTAGGGTTGGGGCCGTTTGATGGGAGCCGCGG‑G‑TTTTGGTTAC‑TTTGGCCACGACCAAAGAAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGATGC < 2:1236654/150‑1 CCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑TTTTGGTTAC‑TTTGGCCACGACCGAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGATGCGA > 2:1260994/1‑150 CCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑TTTTGGTTAC‑TTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGATGCGA > 1:4639100/1‑150 CCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑TTTTGGTTAC‑TTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGATGCGA > 2:1559296/1‑150 CCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑TTTTGGTTAC‑TTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGATGCGA > 2:1347594/1‑150 CGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑TTTTGGTTAC‑TTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGATGCGAA > 1:2882767/1‑150 CGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑TTTTGGTTAC‑TTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGATGCGAA > 1:2881905/1‑150 AACCAAAGCCGTCGGCTCCCCTCATCCGGCCCCTACGCTACGCTCCGGGGTCCCCTCACTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCC‑‑‑‑‑GCAAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2087546‑2087393‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagcccGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACG‑G‑TTTTGGTTAC‑TTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGATGCGAA > NC_002947/2089731‑2089879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |