| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2414814 = | 183 (0.660) | 19 (0.070) | 6/260 | NT | 9.4% | intergenic (+113/‑308) | rlmM/PP_2114 | 23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase |
| ? | NC_002947 | 2414907 = | 194 (0.750) | intergenic (+206/‑215) | rlmM/PP_2114 | 23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase | |||||
CAAAAAACGCTGCGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2414967‑2414814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagcccGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTC > NC_002947/2414907‑2415055 CAAAAAACGCTGCGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAA < 2:459404/150‑1CAAAAAACGCTGCGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAA > 2:8024262/1‑150CAAAAAACGCTGCGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATACATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAA > 2:5784564/1‑150 AAAAAACGCTGCGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAG > 2:5243701/1‑150 AAAAAACGCTGCGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGGTCCCTCGCTCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAG < 2:6213800/150‑1 AAAAACGCTGCGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCCTGGGGCCGCAGCGCTTGTCGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAGC > 2:7951524/1‑150 AAAAACGCTGCGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAGC < 2:4077699/150‑1 AAAAACGCTGCGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAGC > 2:6049116/1‑150 AAAACGCTGCGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAGCC < 1:7777185/150‑1 AAAACGCTGCGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAGCC < 1:6049116/150‑1 AAAACGCTGCGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAGCC < 2:7163729/150‑1 CTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAGCCCCGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCca > 2:4657222/1‑148 CTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAGCCCAGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCca > 2:4286364/1‑148 TCGCTCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCAGGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGAGGATAGGAGCGC > 2:6089085/1‑150 TCGCTCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCAACCATGGGGCCTCAGCGCTTGACGGGCCTCCATGCCCGTCACCTCCC‑TTCGCAAGCCCGGAGCGCGGGAACCCCGGAGCGTAGCGCCCGGGCCCGATGATAGGAGCGC > 1:7920684/1‑150 GCTCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAG > 2:3333661/1‑150 TCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGCGCGCAGCG > 2:8100507/1‑150 TCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCG > 1:4575851/1‑150 TCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCCGCAAGCCCTGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCcgacggt > 2:5197593/1‑143 TCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCCGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCcgacggt > 2:4440661/1‑143 TCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCCGCAAGCCCAGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCcgacggt > 1:2968202/1‑143 TCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TCCGCAAGCCCAGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCcgacggt > 1:2968166/1‑143 CGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTCGCGCAGGGGCCGGATGATAGGAGCGCAGCGTT > 1:3159763/1‑150 CTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCC‑TGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCC‑TTCGCAAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTT > 2:146433/1‑150 CTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCC‑TGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCC‑TTCGCAAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTT > 2:146547/1‑150 TTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCGGGAGCAAGCCCGGAGCGAGGGACCCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGC‑CAGCGTTTTTTGG > 1:6046528/1‑150 CCGGGAGGACCGCGCTGCAGGCCCCATCC‑TGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGC‑CAGCGTTTTTTGGTTACTT > 1:1101028/1‑150 CCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGT < 2:8273847/135‑1 CCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGT > 1:8273847/1‑135 GGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCC‑TCCGCAAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGGTTGACAAAAAGTGACTCGCC > 2:7925395/1‑150 CAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAAT > 1:1657676/1‑150 CAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAAT > 1:2200976/1‑150 CAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAAT > 1:8548665/1‑150 CAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAAT > 1:8548549/1‑150 CAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTA < 2:1850856/136‑1 CAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTA > 1:1850856/1‑136 AAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATC > 1:9079895/1‑150 AGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCC > 1:799637/1‑150 AGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGGAAGGGCCCTCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCC > 1:3516012/1‑150 GCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCA < 1:6049021/150‑1 GCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCA < 2:1040941/150‑1 CCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGT > 2:6205152/1‑150 CCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGT > 2:7469530/1‑150 CCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGT > 1:2325339/1‑150 CCGGAGCGAGGGAAACCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACACGCCGTAAGGGACATACCTTTCAATTTCTTCTGTAGAATTCGCTGAAATACAtt > 2:1855015/1‑148 CGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTC > 1:5790640/1‑150 CAAAAAACGCTGCGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGTA‑CGCGCTGCAGGCCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCC‑TTCGCAAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2414967‑2414814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagcccGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTC > NC_002947/2414907‑2415055 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |