New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5829785 =	298 (1.080)	17 (0.060)	10/264	NT	6.4%	intergenic (+9/+190)	mtgA/rpoH	monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32
	?	NC_002947	5829909 =	214 (0.810)					intergenic (+133/+66)	mtgA/rpoH	monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32

ATGGGGTGAGCGGCTTTTTTGTTTGGCTTTGCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5829939‑5829785 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTAC  >  NC_002947/5829909‑5830053                                                                                                                                                                                                                                                                                                              ATGGGGTGAGCGGCTTTTTTGTTTGGCTTTGCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGG                                                                                                                                                        <  1:6809833/150‑1    GGGTGAGCGGCTTTTTTGTTTGGCTTTGCTGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCC                                                                                                                                                     >  2:4893273/1‑150     GGTGAGCGGCTTTTTTGTTTGGCTTTGCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCG                                                                                                                                                    <  1:3170096/150‑1      GTGAGCGGCTTTTTTGTTTGGCTTTGCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACTGGGGTTGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGG                                                                                                                                                   <  1:5608662/150‑1      GTGAGCGGCTTTTTTGTTTGGCTTTGCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGG                                                                                                                                                   <  1:5904467/150‑1                               GCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCAAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCA                                                                                                                          >  2:560865/1‑150                                      TCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATA                                                                                                                   >  1:8440641/1‑150                                              GGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGC                                                                                                           >  1:3630516/1‑150                                                TAAGCCCGCTCCTACGGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCACGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGG                                                                                                         >  2:1159890/1‑150                                                TAAGCCCGCTCCTACGGGGGATGCGGTTGCCGGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCACGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGG                                                                                                         >  2:1159806/1‑150                                                TAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGG                                                                                                         >  1:8532829/1‑150                                                TAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGG                                                                                                         >  1:8359979/1‑150                                                 AAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGC                                                                                                        >  2:9083738/1‑150                                                      CGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCAAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTC                                                                                                   <  1:560865/150‑1                                                       GCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTGTTCT                                                                                                  >  1:74827/1‑150                                                       GCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCT                                                                                                  >  2:5734507/1‑150                                                       GCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCT                                                                                                  >  1:3459127/1‑150                                                         TCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTT                                                                                                >  2:7011984/1‑150                                                         TCCTACAGGGGATGCGGTTGCCGGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTT                                                                                                >  2:2393096/1‑150                                                                     TGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACT                                                                                    >  1:7940607/1‑150                                                                                   ttCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGA                                                                      >  2:3198613/3‑150                                                                                                                                             CCGCGAAAGGGCCGGGCCTGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGA            >  2:1448920/1‑150                                                                                                                                                      GGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCACTCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTA   <  2:8332893/150‑1                                                                                                                                                      GGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTA   <  1:5921328/150‑1                                                                                                                                                      GGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCATTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTA   <  1:5921325/150‑1                                                                                                                                                       GCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGTGAATACGCTCAGCCGATACGCTGTAC  <  2:2810135/150‑1                                                                                                                                                       GCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTAC  <  2:4440517/150‑1                                                                                                                                                                                                                                                                                                              ATGGGGTGAGCGGCTTTTTTGTTTGGCTTTGCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5829939‑5829785 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTAC  >  NC_002947/5829909‑5830053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.