New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2260037	NA (NA)	14 (0.050)	7/268	NT	NA	intergenic (+127/‑265)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase
	?	NC_002947	= 2260081	NA (NA)					intergenic (+171/‑221)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase

AACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAC  >  NC_002947/2259961‑2260186                                                                             |                                                                                                                                                      aaCCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCG                                                                              >  2:3710293‑M2/1‑150 (MQ=255) aaCCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCG                                                                              >  2:3710218‑M2/1‑150 (MQ=255)   ccAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCA                                                                            <  2:7619490‑M2/150‑1 (MQ=255)   ccAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCGTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCGGGGGCCGCAGCGCGTGGCGGGCCTCCATGCCCGGCACCCGCCGCCGCA                                                                            <  2:5548801‑M2/150‑1 (MQ=255)    cAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCTGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAA                                                                           >  2:5561042‑M2/1‑150 (MQ=255)    cAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGTCCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCCGCACCAGCCTCCGCAA                                                                           <  2:7725199‑M2/150‑1 (MQ=255)    cAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAA                                                                           >  2:5560786‑M2/1‑150 (MQ=255)    cAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAA                                                                           >  1:967022‑M2/1‑150 (MQ=255)    cAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCAGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAA                                                                           <  2:5195321‑M2/150‑1 (MQ=255)    cAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACGCCGGCCTTGCGCCCGGCCCGGCCGCGCCGAAGGGCCCATCCTGGGGGCTCAGCGCATGACGGGCAGCCATGCCCGTCCCCAGCCGCCGCAA                                                                           <  2:7725163‑M2/150‑1 (MQ=255)    cAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCACACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAA                                                                           <  2:5195508‑M2/150‑1 (MQ=255)     aaaaaaCGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACGCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCAGGGGCCGCAGCGCGTGACGGGCAGCCATGCCCGTCACCGGCCGCCCCAAG                                                                          <  1:596361‑M2/150‑1 (MQ=255)      aaaaaCGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGa                                                                         >  2:2852106‑M2/1‑149 (MQ=255)      aaaaaCGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGG                                                                         >  2:6716659‑M2/1‑150 (MQ=255)      aaaaaCGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGG                                                                         <  2:3768733‑M2/150‑1 (MQ=255)       aaaaCGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGC                                                                        >  2:362298‑M2/1‑150 (MQ=255)       aaaaCGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGC                                                                        >  2:4746907‑M2/1‑150 (MQ=255)       aaaaCGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGC                                                                        >  2:4746912‑M2/1‑150 (MQ=255)        aaaCGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCC                                                                       >  1:3449998‑M2/1‑150 (MQ=255)        aaaCGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCC                                                                       >  1:3449967‑M2/1‑150 (MQ=255)                                                        ccTCACTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTCCGCAAGCCCtgagtgaggggaccccggagcgtagcgtaggggccggatgatgggagcc                      <  2:5480302‑M2/150‑50 (MQ=255)                                                         cTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcg                      <  1:6511445‑M2/150‑50 (MQ=255)                                                         cTCACTCCGGCCTCGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcg                      <  2:1675947‑M2/150‑50 (MQ=255)                                                          tCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCtgagtgagggaaccccggagcgcagcgcaggggccggatgatgggagcgc                     <  2:6237387‑M2/150‑51 (MQ=255)                                                             cTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCggagggaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagc                  <  2:1759215‑M2/150‑54 (MQ=255)                                                              tCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcg                 <  2:1389908‑M2/150‑55 (MQ=255)                                                                cGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcggagcgtt               <  1:7774440‑M2/150‑57 (MQ=255)                                                                  gCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgtttt             <  2:7564973‑M2/150‑59 (MQ=255)                                                                   ccTTGCTCCCGGCAGGACCGCGCCGAGGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCCTCCATGCCCGTCAGCTGCCTCCGGGAGGCCtgagtgaggggaccccggggcgccgcgcgggggccggttggtgggagcgcagcgtttgg            <  2:910385‑M2/150‑60 (MQ=255)                                                                   ccTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCtgagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttt            <  1:9013897‑M2/150‑60 (MQ=255)                                                                             ggCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaac  <  1:6649968/150‑1 (MQ=11)                                                                             ggCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaac  <  1:6562553/150‑1 (MQ=11)                                                                             |                                                                                                                                                      AACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAC  >  NC_002947/2259961‑2260186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.