| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,703,292 | G→C | 23.1% | intergenic (+99/‑68) | lysS → / → PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,703,292 | 0 | G | C | 23.1% | 488.5 / 168.4 | 255 | intergenic (+99/‑68) | lysS/PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (113/83); new base C (31/28); total (144/111) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.36e-01 | |||||||||||
Only 100 of 257 total aligned reads displayed.
GTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGA > NC_002947/1703145‑1703441 | gTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGcc < 2:3812047/150‑1 (MQ=255) cGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑tt < 2:2649840/150‑1 (MQ=255) cGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑tt < 1:3380986/150‑1 (MQ=255) cGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑tt < 2:6187579/150‑1 (MQ=255) gATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCC‑tttg < 1:6512454/150‑3 (MQ=255) aTCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAATCCCGCTCGTACAAAGGCC‑TTGt > 2:7233719/1‑150 (MQ=255) tCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTa < 2:2590237/150‑1 (MQ=255) ccGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAg < 1:1053300/150‑1 (MQ=255) ccGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAg < 2:4081183/150‑1 (MQ=255) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGa < 1:1648115/150‑1 (MQ=255) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGa < 1:2424900/150‑1 (MQ=255) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGa < 1:366855/150‑1 (MQ=255) cgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCCCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAg < 2:5985517/150‑1 (MQ=255) gACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGc < 1:1490597/150‑1 (MQ=255) gACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGc < 1:8631873/150‑1 (MQ=255) cgacATCCTCGTCCCGCACATGCCTCCGCAGGCCTGACTGAGCTGAACGAGCCGCCTTTCGAGGCGGCATTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAACGCC‑TTGTAGGAGC‑gg < 2:5225206/147‑1 (MQ=38) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTGCTGGCCCCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTGGGAGC‑gg < 1:4190589/150‑1 (MQ=37) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGC‑gg < 1:5169153/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑gg < 1:5821489/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑gg < 2:5918717/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑gg < 2:5618350/150‑1 (MQ=255) cGTCAGCCTGGGCCCGCACCCGCGTCCGCCGGCCGGAGGGCGCTGAACGAGCCGCCCTCCGAGGCGGCTTTTTCTCGCCTGAAGCTTTATGTTGACAGGACCGGCCGCTTCGCGGGTAAACCCGCTCCTACAAGGCCG‑TTGTAGGAGC‑gg < 2:7698595/150‑1 (MQ=21) gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGC‑ggg < 2:3637428/150‑1 (MQ=255) gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑ggg < 2:4749460/150‑1 (MQ=255) gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑ggg < 1:9026858/150‑1 (MQ=255) cATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGtt > 2:8452796/1‑150 (MQ=255) tCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGTGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTa < 1:5471078/150‑1 (MQ=255) cTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGCCCGAGCCGCCTTTCGAGGCGGCATTGTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCGTCGCGGGTAACCCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTAcc < 2:3261310/150‑1 (MQ=39) tGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTAccc > 2:4445331/1‑150 (MQ=255) tGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCGCCGACAAAGGCC‑GTGTAGGAGC‑GGGGTTAccc > 1:2987299/1‑150 (MQ=255) ttCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCcgc < 1:4112480/150‑1 (MQ=255) ttCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCcgc < 1:216240/150‑1 (MQ=255) cGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCACCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAg > 2:8017096/1‑150 (MQ=255) gCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAAGGCC‑TGGGAGGAGC‑GGGTTTACCCGCGCAgg > 2:8587136/1‑150 (MQ=255) acaTGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAgggg > 2:5812621/1‑150 (MQ=255) aTGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGcc > 2:6803182/1‑150 (MQ=255) tCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGc > 1:8488654/1‑124 (MQ=255) tCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGc < 2:8488654/124‑1 (MQ=255) cGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCC‑tttgt > 1:8251874/1‑113 (MQ=255) cGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCC‑tttgt < 2:8251874/116‑4 (MQ=255) gCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTTAACCCCCGCCAAAAAACGCC‑ATGTGGGTGCGGGGTTTACAC‑CGCAGGGGCCACCACAGa > 1:832439/1‑150 (MQ=255) ggCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGAACCGGCCTCTTCGCGGGTAACCCCGCCCCTACAAAGGCC‑TTGTCGGAGC‑GGTTTCACCCGCGAAGGGGCCAGTACTGAcaa < 2:8501891/150‑3 (MQ=255) gCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCAACAAAGGCC‑GTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACAGACGAAA‑CACCCCCaa > 1:6796914/1‑149 (MQ=255) tGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGa > 2:3155388/1‑150 (MQ=255) aaCGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCCCTCCGACAAAGGCC‑GTGTAGGAGC‑GGGGTTACCCGCGCAGGGGCCACCACAGCCCCAA‑CACCCCCCAGAgg > 1:2720124/1‑150 (MQ=25) cGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCCCTCCAACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACCAAA‑CACCCCCCTGAGGTa > 2:2014547/1‑150 (MQ=255) cgccgccTTTCGGGGGGGTTTTTTCTTGCCTTACTCTTTTTGTTGTCAGAACGGGCCTCTTCGGGGGTAAACCCGCTCCTACAAGGGCG‑TTTTTGGTGG‑GGTTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATc < 2:1546705/149‑1 (MQ=25) ggtggcggcTTTTTCTTGCCTGATGCTTTTTTTTGTCTGTACGGGCCTCTTGGGGGTTAAACCCGCTCCTACAACGGCT‑TTGTGGGTGG‑GGTTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGaca < 2:1814504/147‑1 (MQ=255) tttttCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTTAAACCGCTCCGACAAAGGCC‑GTGTTGGTGC‑GGGGTTACCCGCGCAGGGGCCCGCACTGACGAAA‑AACCCCCAAGTGGTATCCCCCGTGACACCCGCCATg > 1:5089648/1‑150 (MQ=255) ccTGACGCTTTATGTTGTCAGTACCGGCCTCTGCGGGGGTAAACCCGCTCCTACAACGGCC‑TTGTAGGTGG‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCaa < 2:1145265/150‑1 (MQ=38) ccTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTTAAACCGCTACGACAAACGGC‑GTGGTGGCGC‑GGGTTTAACCGCGAAGGGGCCCGCCCGGACGTAA‑CACCCCCCCGAGGTTTCCCCCGTGCCACCCGCCCGGCCTGGCCaa > 1:7332057/1‑150 (MQ=255) cTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCCCTCCTACAAAGGCC‑GTGTTGGAGC‑GGGTTTACCCGCGCAGGGGCCCCCACTGACGAAA‑CACCCCCATGAGGGATCCCCCCTGACACCCCCCCTGCCGGACCAAg > 1:7435667/1‑150 (MQ=37) tGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTTAACCCGGTCCTTCAAAGGGG‑TTTTTGGTGC‑GGGTTTAGCCGGGGTGGGGGCCGGACTGACGAAA‑GAACCCCATGTGGTGTGCCCCGTGTCACCCGCCATGCCTGTCCaatg > 2:2744665/1‑148 (MQ=255) tGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑GTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACCAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGGCCAAgg > 2:735973/1‑150 (MQ=255) cggttttTGTTGTCAGTCCCGGCCTCTGCGGGGGAAAACCCGCTCACACACGGGCT‑TTGTTGGTGG‑GTTTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGgcgc < 1:5693919/147‑1 (MQ=255) aGCTTTATGTTGTACGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCG‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCCTGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGgcgc < 2:6347210/150‑1 (MQ=255) tCAGTCCCGGCCTGTCCGCGTCTAACCCCCCTCCCCCCCCGCCC‑TGGTCGGCGG‑GGTTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGc < 1:4722576/150‑1 (MQ=255) tCAGTACCGGCCTCTTCGCGGGTAAAACCGCTCCGACAAAGGCC‑GTGTAGGAGC‑GGGGTTACCCCCGTAGGGGCCCGCACAGACGAAA‑CACCCCCATGAGGTATCCCCCCTGACACCCGCCAAGCCTGACCAAGGCGCCGCCGGCCTCGc > 2:6955169/1‑150 (MQ=37) aGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CAACCCCAAGAGGTATCCCCCGTGACACCCGCCATGCCTGGCCAAGGCGCCGCCGGCATCGCCa > 1:6773161/1‑150 (MQ=255) aGTACCGGCCTCTTCGCGGGTAAAACCGCGCCGACAAAGGGC‑GTGTGGGTTC‑GGGGTTACCCGCGGAGGGGGCCGCCCGGACGAAACCACCCCCA‑GAGGGATGCCCCCGGACAACCGCCCTGCCGGTCCAACGCGGCGCCGGCCACGccc > 2:8401517/1‑149 (MQ=255) aGTACCGGCCTCTTCGCGGGTAAAACCGCACCTACAAAGGGC‑GTGTAGGAGC‑GGGGTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCAGGGGGGCTCCCCCGGGACACCCCCCATGCCGGACCAAGGCGCCGCCGGCAACGccc > 2:1717054/1‑149 (MQ=25) gCCTCTTCGCGGGTAGACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGt > 2:5071908/1‑150 (MQ=255) gcgGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGc < 2:9085120/108‑1 (MQ=255) gggTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGc > 2:8159374/1‑150 (MQ=255) tAATCCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTg > 1:7968572/1‑150 (MQ=255) tAAACCCGCTCCTACAACGGCC‑TTGTAGGAGG‑GGGTTAACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTg < 1:9051070/150‑1 (MQ=255) aCCCGCTCCTCCACAGGCC‑TTGTAGGCGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa < 2:7811289/150‑1 (MQ=255) aCCCGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa > 2:8123474/1‑150 (MQ=255) aCCCGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGCTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCCTCGCCGAAAGCGTGCaa > 2:331356/1‑150 (MQ=38) aCCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa > 1:4479196/1‑150 (MQ=255) ccGCTCCTCCAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa < 2:6482700/150‑1 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 2:8531985/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:710761/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTg < 2:3575346/145‑1 (MQ=37) ccGCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTg > 1:3575338/1‑145 (MQ=37) ccGCCCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:9161065/1‑150 (MQ=255) cGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAc > 2:7881960/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:7689688/1‑150 (MQ=37) gCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:1712981/1‑150 (MQ=255) gCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:6312974/1‑150 (MQ=255) cTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCa > 1:5878942/1‑150 (MQ=255) tCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 1:4202208/1‑150 (MQ=255) tCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:1263710/1‑150 (MQ=255) tCCTACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 1:6089903/1‑150 (MQ=255) tCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:3092975/1‑150 (MQ=255) tCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:2630922/1‑150 (MQ=255) tCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:5319780/1‑150 (MQ=255) acaaacacAGCCC‑TTGTAGGAGG‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa < 1:8758056/146‑1 (MQ=255) cTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 1:3230935/1‑150 (MQ=255) cTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 2:5481596/1‑150 (MQ=255) tACAAGGCCT‑TTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTACTGACAAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGc > 1:5407449/1‑150 (MQ=37) aCAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 2:3868225/1‑150 (MQ=255) cAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGTCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCg > 2:3673482/1‑150 (MQ=255) acaaGGCCTTTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 2:3378441/3‑150 (MQ=255) aaaGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 2:149243/1‑150 (MQ=255) aaaGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTACTGACGAAA‑CACCCCCATGAGGTATccccc > 2:2940123/1‑72 (MQ=21) aaaGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTACTGACGAAA‑CACCCCCATGAGGTATccccc < 1:2940123/72‑1 (MQ=21) aGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCTGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCaa > 2:224585/1‑150 (MQ=255) aGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCaa > 2:4308079/1‑150 (MQ=255) gCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGa > 1:8872315/1‑150 (MQ=255) | GTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGC‑GGGTTTACCCGCGAAGGGGCCAGCACTGACGAAA‑CACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGA > NC_002947/1703145‑1703441 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |