| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,728,698 | A→G | 5.0% | intergenic (+50/+73) | cspA‑I → / ← PP_1523 | major cold shock protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,728,698 | 0 | A | G | 5.0% | 832.1 / 18.0 | 255 | intergenic (+50/+73) | cspA‑I/PP_1523 | major cold shock protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (127/115); new base G (5/8); total (132/123) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.99e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 | |||||||||||
Only 100 of 269 total aligned reads displayed.
GAGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTCCCC > NC_002947/1728553‑1728845 | aGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTg < 2:6722950/150‑1 (MQ=255) gggCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCGTGGTGGc < 2:3810525/150‑1 (MQ=255) gggCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGc > 1:7342175/1‑150 (MQ=255) cATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTATGCCCGTG‑‑GCAGCCACCGTGGTGGCTGct < 1:7420996/150‑2 (MQ=38) tACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACgg < 1:1101569/150‑1 (MQ=255) ccTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCa > 1:8933474/1‑150 (MQ=255) ccTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCAGCGAAGCAGCCACCACGGTGGCTGCCACGGGCa > 2:2169577/1‑150 (MQ=255) cTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCAt < 2:9028769/150‑1 (MQ=255) cGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGccc < 1:103192/150‑1 (MQ=255) gAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCg > 2:8090331/1‑150 (MQ=255) aaGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGt > 1:7825627/1‑150 (MQ=255) aGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTa < 1:5841665/150‑1 (MQ=255) cAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttcg < 2:6009972‑M2/150‑5 (MQ=255) cGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttcgcgg > 1:4433054‑M2/1‑143 (MQ=255) cGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttcgcgg > 2:6886559‑M2/1‑143 (MQ=255) gTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTa > 2:1785119/1‑150 (MQ=255) gAGTACGCCTGCGTGCAGGGCCAGAACGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAAc < 1:127747/150‑1 (MQ=255) gAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAAc < 2:5946974/150‑1 (MQ=255) tACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCa > 2:70808/1‑150 (MQ=255) aCGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCAt < 1:4849464/150‑1 (MQ=255) gCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTc > 1:3616256/1‑150 (MQ=255) gCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTAc < 2:3040097/150‑1 (MQ=255) cGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACa < 2:624256/150‑1 (MQ=255) gTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAg > 2:5416477/1‑150 (MQ=255) tGCAGGGCCAGAAAGGCCTGCAAGCCGTAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGa < 1:6801443/150‑1 (MQ=255) tGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGa > 2:1944907/1‑150 (MQ=255) gCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGaa > 2:4691973/1‑150 (MQ=255) ggCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGa > 2:5213399/1‑150 (MQ=255) ccAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGc < 2:7345290/150‑1 (MQ=255) ccAGAAAGGCCTGAAACCCTAATACGTAGTGGGCCTCTGAGCATCTGGTTTCAATCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGCGCATAGCCCGTCTTCGCGGGTAAACCCATACCGACAGAAACGAGc > 2:8618084/1‑150 (MQ=38) aGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGTTTTCAAGCCGTAGGAGCGTGCT‑TGCCCTCGAAGCAGCCACCAAGGTGGCTGCCACGGGCATAGCACGTATTCGCTGGTAAACCCATTCATACAGAAACGAGCaa < 2:4609279/150‑1 (MQ=255) aGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCaa < 1:166444/150‑1 (MQ=255) aaaGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGc > 2:102588/1‑150 (MQ=255) cAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGttt < 2:3797022/150‑1 (MQ=255) cAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGttt < 1:708142/150‑1 (MQ=255) aaGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTc < 2:2309827/150‑1 (MQ=255) aaGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTc < 2:7936071/150‑1 (MQ=255) aGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCa < 1:8532988/150‑1 (MQ=255) gCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCat < 1:2488114/150‑1 (MQ=255) ccGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCatg > 2:6117433/1‑150 (MQ=255) cGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCatga < 1:8850782/150‑1 (MQ=255) cGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACG‑GCAGGCTTGCTCGTTTctgta < 1:1944907/150‑5 (MQ=38) gAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCatgat > 1:493303/1‑150 (MQ=255) gAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCatgat > 1:1242515/1‑150 (MQ=255) gTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCGCGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGc > 1:2773085/1‑150 (MQ=255) gTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAg > 2:1001957/1‑150 (MQ=255) ggCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTGCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTg > 1:2950514/1‑150 (MQ=255) tctGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGGAttcgcgggtaaacccattcctacggcttgaaaccagaggctcagaggcccactacgtcttcggcttgc < 2:4342018‑M2/150‑69 (MQ=255) tGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTAc < 1:6130806/136‑1 (MQ=255) tGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTcc > 2:4284449/1‑150 (MQ=255) gAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCct < 2:3663415/150‑1 (MQ=255) ccTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCtt > 2:4241034/1‑150 (MQ=255) ctctGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTc > 1:9108978/1‑150 (MQ=255) tctGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCa > 2:7303504/1‑150 (MQ=255) tctGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCa > 2:6556158/1‑150 (MQ=255) tctGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCa > 1:367472/1‑150 (MQ=255) ctGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCAc > 2:7479004/1‑150 (MQ=255) gTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGt > 2:2702145/1‑150 (MQ=255) ttCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCg < 1:4531867/150‑1 (MQ=255) ttCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCg > 1:8423658/1‑150 (MQ=255) tCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCgg > 1:4984997/1‑150 (MQ=255) aaGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGgcg < 1:4198595/150‑1 (MQ=255) aaGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGgcg > 1:6414999/1‑150 (MQ=255) gCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCt > 1:4284817/1‑150 (MQ=255) tAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATg < 1:7535670/150‑1 (MQ=255) aGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGc < 2:119984/150‑1 (MQ=255) ggAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCg < 1:4675391/150‑1 (MQ=255) ggAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCg < 1:6755843/150‑1 (MQ=255) gAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttcgcgggtaaacacgctcctacggcttgaaaccagaggctcagaggcccacaacgtcttcggcttgcaggcctttctggccctgcacgcaggc < 2:5303876‑M2/150‑95 (MQ=255) gAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCgg < 2:7028511/150‑1 (MQ=255) aGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGa < 2:3301585/150‑1 (MQ=255) aGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGa < 2:5170465/150‑1 (MQ=255) aGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGa < 2:48235/150‑1 (MQ=255) aGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGa < 2:8358925/150‑1 (MQ=255) aGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGa < 1:6009972/150‑1 (MQ=255) gggctatGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGAcc > 2:4999884/7‑150 (MQ=255) ggCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCa < 1:5659098/150‑1 (MQ=255) gCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAg > 1:2059404/1‑150 (MQ=255) gCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAg < 2:3857671/150‑1 (MQ=255) gCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCAAAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAg < 1:8058342/150‑1 (MQ=255) t‑tGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTAttcgcgggcaagcccgctcctacggcttgaaaccagaggctcagaggcccactacgtcttcggcttgcaggcctttctggccctgcacgcaggcgtactcca < 2:1358658‑M2/150‑103 (MQ=255) ccGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCa < 1:1461439/150‑1 (MQ=255) cgcgAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAg < 1:3193853/150‑1 (MQ=255) cgcgAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAg > 1:1959745/1‑150 (MQ=255) gAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCAt > 1:5368002/1‑150 (MQ=255) tggcagcCACCGTGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCAtc > 2:2237586/3‑150 (MQ=255) cagcCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCAtcttc < 2:8576898/150‑1 (MQ=255) cagcCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCAtcttc < 2:399148/150‑1 (MQ=255) cagcCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGATAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCAtcttc < 2:7582519/150‑1 (MQ=255) gcCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATcttctt > 2:5880065/1‑150 (MQ=255) ccaccaCGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCttcttc < 2:1779760/150‑1 (MQ=255) caccacGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTcc > 2:4141922/1‑150 (MQ=255) accacGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTccc > 1:4340391/1‑150 (MQ=255) accacGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTccc < 2:6039993/150‑1 (MQ=255) accacGGTGGCTGCCACGGGCAGAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCCCCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTccc < 2:513550/150‑1 (MQ=255) ccacGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCttcttc < 2:165817/147‑1 (MQ=255) ccacGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTcccc < 1:8151856/150‑1 (MQ=255) ccacGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTcccc < 1:6528332/150‑1 (MQ=255) ccacGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTcccc < 2:8810275/150‑1 (MQ=255) ccacGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTcccc > 1:2132570/1‑150 (MQ=255) | GAGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCT‑TGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTCCCC > NC_002947/1728553‑1728845 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |