| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,780,171 | T→C | 6.5% | intergenic (+88/+18) | PP_1587 → / ← dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,780,171 | 0 | T | C | 6.5% | 318.6 / 7.8 | 109 | intergenic (+88/+18) | PP_1587/dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase |
| Reads supporting (aligned to +/- strand): ref base T (83/14); new base C (4/3); total (92/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.43e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 112 total aligned reads displayed.
TGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACCC > NC_002947/1780025‑1780320 | tgCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTAAAGCGCTGCGCTTGAA‑ATCAGCGCAGTAACAGTGGGAGAGGGCGTGcc > 2:306837/1‑150 (MQ=255) aaGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGaa > 2:6817188/1‑150 (MQ=255) tACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCAGTGGGAGCGGGCGTGCCCCCGAAggg > 1:6015958/1‑150 (MQ=255) tACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCACTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAggg > 2:5529290/1‑150 (MQ=255) tACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACACGTACAGCGCTGCCCATGAA‑ATCAGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAggg > 2:6177522/1‑150 (MQ=38) gCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGCGCGGGCGTGCCCGCGAAGGG‑GGTGATCAGc > 1:7592934/1‑150 (MQ=255) gCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATAAGc > 1:7592952/1‑150 (MQ=255) tatGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCGGTTCCGGTGGGAGCGGGCGGGCCCGCGCAGGG‑GTTGATCAGCGGgttt > 2:4609652/1‑150 (MQ=38) gCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTACCACAGGTACAGCGCTGCGCTTGAA‑ATAAGCGCAGAACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GGTGATCAGCGGTTTTGAAGGAAGgc > 2:4237873/1‑150 (MQ=38) gCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCGCCCCCAGGTACTGGGCGGCGGGTGGA‑AACAGCGCGGTGCCGGGGGGCGCGGGCGTGCCCCCGGAGGG‑GGTGGTCAGCGGGTTTTGAGGTAGgc > 2:25797/1‑150 (MQ=255) gCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCCCGCCCACCGGTACACCGCGGCGCGTGAA‑AGCAGCGCGGTACCGGGGGGCGCGGGCGGGCCCGCCCCCGG‑GGTGTTCAGCGGTTTTGCCGGAACgc > 2:25788/1‑150 (MQ=255) cGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACACGTAATGCGCTGCGCTGGTA‑ATCAGCGCGGTACCGGGGGGAGCGGGCGTGCCCCCGGAGGG‑GTTGATAAGCGGTTTTGCAGGAAGgcg > 1:4405917/1‑150 (MQ=38) cGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCGCCCCCAGGGTCTGGGCTGGGCTTGGA‑ATGAGCGCGGTACCAGTGGGAGCGGGCGTGCCCCCGCAGGG‑GGTGATGAGCCGTTTTGGGGGGAGgcg > 1:4406195/1‑150 (MQ=255) gAAGCTGGGTTCAGTCAAGTAGACGCTATCAAGGCCCTTCGCGGGGGCGCCCGCTGGCACAGGTACTGCGGTGCGGTTGAA‑ATGAGCGCTGTACCTGTGGGAGCGGGCGTGGCCGCGAAGGG‑GTTGTTCAGCGGTTTTGCAGGGAGgcgg > 2:325877/1‑149 (MQ=255) gAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACAGCGCTGCGCTTGAA‑ATCAGCGCTGTACCGGTGGGAGCGGGCGTGGCCGCGGAGGG‑GTTGATCAGCGGTTTTGCAGGGAGgcgc > 2:3964349/1‑150 (MQ=38) gAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGGACGGCGCTGCGCGTGAA‑ATCAGCGCGGTACCGGGGGGCGCGGGCGGGCCCGCGCACGG‑GGGGATCCGCGGTTTTGCACGAAGgcgc > 2:3964798/1‑150 (MQ=37) cTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACAGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAAt > 2:2883991/1‑150 (MQ=255) tGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCAGCGCGTGAA‑ATCCGCCCAGGACCGGTGGGAGCGGGCGTGCCCCCGCAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGacag > 2:7231251/1‑147 (MQ=38) ttCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCGCCCACACGTACAGCGCTGCGCGGGAA‑AACAGCGCGGTACCTGTGGGGGCGGGCGGGCCCGCGAAGGG‑GTTGTTCAGCCGTTTTGCAGGAAGGCGCCAATgcgcg > 2:1745185/1‑149 (MQ=255) tCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCCCAGGTACTGCGCTGCGCGTGCC‑ATCCGCGCGGTACCTGTGGGAGCGGGCGTGCCCGCGACGGG‑GGTGATCACCGGCGTTGCAGGAAGGCGCGAAGGCGCTc > 2:7074332/1‑150 (MQ=25) tCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCGGGGGGAGCGGGCGTGCCCGCGAAGGG‑GGTGATCAGCGGTTTTGCAGGACGGCGCGCATGCGCTc > 2:7073964/1‑150 (MQ=38) aaGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACAGCGCTGCGCTTGAA‑ATGAGCGCGGGACCTGTGGGATCCGGCGTGCCCCCCAACGG‑GGTGTTCAGCGGTTTTGCAGGCAGGCCCGAAGGCGCTCcgccgc > 2:4632378/1‑150 (MQ=37) gACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGGACGGCGCGGCGCGTGGA‑ATAAGCCCTGTACCATGGGGAGCGGGCGTGCCCGCGCAGGG‑GGTGGTCAGCGGGGTTGCAGGAAGGCGCGTATGCGCGCCGCCGCGTCGa > 2:1594695/1‑150 (MQ=255) ccTATCAAGGCCCTTCGCGGGCGCGCCCGCGCCCCCAGGTACGGCGCGGCGCGTGTA‑AACACCGCGGTACCGGTGGGAGCGGGCGGGCCCCCGCAGGG‑GTTTGTAAGCCGGTTTTCAGGCAGGCGCGAAAGCGCACCCCCGCGTCGCTGc > 2:3077475/1‑150 (MQ=255) ccTATCAAGGCCCTTCGCGGGCGCGCCCGCGCCCACACGGACTGCGCTGGGGGGGCA‑ATCAGAGCAGTACCGGGGGGAGCGGGCGTGCCCGCGCAGGG‑GTTGGTCAGCGGTGTTGCAGGAACGCGCGAAGGCGCTCCGCCGCGGCGATGc > 2:3367330/1‑150 (MQ=255) gcgGGCACGCCCGCTCCCACAGGTAAAGCGCTG‑GTTTAAAGCGCAGCGCCCTACCGGGGGGCCCGGGCCCGCCCGCCCAGGG‑GGTGATCAGCGGGTTTGCAGGCAGGCGCGAATGCGCTCCGCCGCGTCGATGCAGTCGGCCCGccgggc > 2:8264164/1‑145 (MQ=9) cgGGCGCGCCCCCTCCCACAGGTACAGCGCTGCGCTTGAA‑ATCAGCGCTGTACCGGTGGGATCCGGCGTGCCCCCGAACGG‑GTTGATCATCGGTTTTGCAGGAAGGCGCGAATGCGCACCGCCCCGTCCATGCATTCGGCCAGCGGTGCa > 2:627128/1‑150 (MQ=255) gcCCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGTGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTg > 2:7993439/1‑150 (MQ=255) cGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCa > 1:2690311/1‑150 (MQ=255) tCCCACAGGTACAGCGCTGATTTCAAG‑CGCAGCGCAGTACCTGTGGGAGCGGGCGCGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATgc > 2:5744341/1‑150 (MQ=21) tCCCACAGGTACAGCGCTGATTTCAAG‑CGCAGCGCAGTACCTGTGGGAGCGGGCGCGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATgc > 2:5744320/1‑150 (MQ=21) ccACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATgcgc > 2:721602/1‑150 (MQ=255) cacaGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCa > 2:4271672/1‑150 (MQ=255) cacaGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCa > 2:4271654/1‑150 (MQ=255) cacaGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCa > 2:700117/1‑150 (MQ=255) acaGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCAc > 1:8587119/1‑150 (MQ=255) acaGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCAc > 2:58036/1‑150 (MQ=255) acaGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCAc > 1:1658038/1‑150 (MQ=255) caGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCAcg > 1:8779212/1‑150 (MQ=255) aGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCAcgc > 1:1373050/1‑150 (MQ=255) aGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCAcgc > 2:8343945/1‑150 (MQ=255) tACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGcc > 2:6538831/1‑150 (MQ=255) aCTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAAc > 1:2766112/1‑129 (MQ=255) aCTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAAc > 1:2766273/1‑129 (MQ=255) aCTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAAc < 2:2766273/129‑1 (MQ=255) aCTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAAc < 2:2766112/129‑1 (MQ=255) aCTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGccc > 1:4906696/1‑150 (MQ=255) ctgcgctgcgCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCg > 2:1293962/1‑150 (MQ=255) tgcgctgcgcTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCgg > 2:354317/1‑150 (MQ=255) gcgctgcgctTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGc > 2:2127470/1‑150 (MQ=255) gcgctgcgctTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGc > 2:2127452/1‑150 (MQ=255) gcgctgcgctTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGc > 1:3753354/1‑150 (MQ=255) tgcgctTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCAccc > 1:4325201/1‑150 (MQ=255) tgcgctTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GGTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCAccc > 1:8927225/1‑150 (MQ=255) cgctTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCgg < 1:4271672/150‑1 (MQ=255) cgctTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCgg < 1:4271654/150‑1 (MQ=255) ttGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCg > 2:6100148/1‑139 (MQ=255) ttGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGtt > 1:7915124/1‑150 (MQ=255) ttGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGtt > 2:4003310/1‑150 (MQ=255) tGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTc > 1:5614823/1‑150 (MQ=255) tGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTc > 1:1042740/1‑150 (MQ=255) gAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCa > 2:8314626/1‑150 (MQ=255) gAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCa > 2:8991260/1‑150 (MQ=255) a‑aTCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCAcc > 2:42137/1‑150 (MQ=255) tCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCAcccc > 2:1484768/1‑150 (MQ=255) tCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCAcccc > 2:245717/1‑150 (MQ=255) gcagTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCa < 1:8565984/147‑1 (MQ=255) tGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCGACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACt > 2:3981562/1‑150 (MQ=255) agTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACt > 2:6335717/2‑150 (MQ=255) tACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTc > 2:3420801/1‑150 (MQ=255) tACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTc > 2:8672096/1‑150 (MQ=255) tACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTc > 2:4066044/1‑150 (MQ=255) aCCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCa > 2:1158950/1‑150 (MQ=255) cgtgggggAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCAc < 2:3598938/145‑1 (MQ=255) ccTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCAc > 1:1245896/1‑150 (MQ=255) cTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCAcg > 1:1121153/1‑150 (MQ=255) cTGTGGGAGCGGGCGCGCCCGCGAAGGGCCTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCAc < 2:7581643/150‑1 (MQ=255) cTGTGGGAGCGGGCGCGCCCGCGAAGGGCCTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCAc < 2:3199302/150‑1 (MQ=255) tgtgGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCAcgc > 1:8525448/1‑150 (MQ=255) tgtgGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCAcgc > 1:5858114/1‑150 (MQ=255) tgggggAGCGGGCGTGCCCGCGAAGGG‑GTTGATCATCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCCTGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCAcgc > 1:4620383/4‑150 (MQ=255) gtgGGAGCGGGCGCGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCAc > 2:3335155/1‑142 (MQ=255) gggggAGCGGGCGCGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCAc < 1:3335155/140‑1 (MQ=255) tgGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACtt > 1:971322/1‑143 (MQ=255) tgGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGa > 2:3154170/1‑150 (MQ=255) gggAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGAc < 1:721602/150‑1 (MQ=255) gggAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGAc > 2:5525737/1‑150 (MQ=255) ggcggggggcgggcCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGAc < 1:5020077/144‑1 (MQ=255) cttcgCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCgg > 2:3087682/5‑125 (MQ=255) ggcgCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACa < 2:8798294/147‑1 (MQ=255) ggAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACa > 2:6920109/1‑150 (MQ=255) ggAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACa < 2:1373050/150‑1 (MQ=255) ggAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACa > 1:4324447/1‑150 (MQ=255) ggAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACa > 2:2300662/1‑150 (MQ=255) ggAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACa > 2:2300761/1‑150 (MQ=255) cgggcgggCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTa < 2:1216579/150‑1 (MQ=255) gCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGa > 1:4525301/1‑150 (MQ=255) gCGTCCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGa < 1:556987/150‑1 (MQ=255) gTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGAcc > 1:7572148/1‑150 (MQ=255) tGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGAccc < 1:1876313/150‑1 (MQ=255) | TGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGG‑GTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACCC > NC_002947/1780025‑1780320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |