| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 161,733 | A→C | 12.3% | intergenic (‑228/+18) | PP_0152 ← / ← PP_0153 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 161,733 | 0 | A | C | 12.3% | 894.5 / 32.9 | 340 | intergenic (‑228/+18) | PP_0152/PP_0153 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (202/86); new base C (5/44); total (208/132) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.06e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 344 total aligned reads displayed.
TGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGGCGCTGCCACAGCAGCAGGGT > NC_002947/161584‑161882 | tgctgTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGaa > 2:6790442/1‑150 (MQ=255) cAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCaa > 1:8783010/1‑150 (MQ=255) cAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCaa > 2:1266666/1‑150 (MQ=255) cAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCaa > 2:4049135/1‑150 (MQ=255) cAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCaa > 1:297282/1‑150 (MQ=255) aGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAACTTCACGGTGCCGG‑CTTCGCCGGCacc < 2:6881077/150‑3 (MQ=255) aaCTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCgg > 1:7839925/1‑150 (MQ=255) aCTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCAAGGTGCCGG‑CGAAGCCGGCAAGCCggg > 2:3617449/1‑150 (MQ=255) tGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAg > 1:9125367/1‑150 (MQ=255) ttAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCt > 1:4883748/1‑150 (MQ=255) aaGGCGAATTTTAATTTTTTTAAAACTGTACTGGTCGCAATCTGAAGCCCGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGT‑TTTGAGAAATTCACGGTGCGGG‑CGACGCCGGCAAGCCGGGAGCTTa < 2:2872616/150‑1 (MQ=255) aGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAg > 2:7276825/1‑150 (MQ=255) aGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAg > 2:9079700/1‑150 (MQ=255) gCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAgcg > 1:4736547/1‑150 (MQ=255) gCGAATTTTAATTTTTGTAAAAATGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCAGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAgcg > 2:1872870/1‑150 (MQ=255) gAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGcc > 1:8113680/1‑150 (MQ=255) ttttaattttTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGa > 1:1327455/1‑150 (MQ=255) ttttaattttTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCAGCAGTCACCTGCAACGGG‑TTTGAGAAATTCAAGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGa > 1:2239150/1‑150 (MQ=255) tttaattttTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGaa > 1:4513852/1‑150 (MQ=255) ttattttTGTAAAACTTTATTGGTCGAAATCTTCTCCCCTCGTGGGCGCGTCTCTGGGGCAATAAAAAACCCTCTTCAGTAACTTGATACGTT‑TTTTTGATATCCTGGGTGCGGG‑CGAGGCGGGCAAGCCGGGAGCTTAGCGCCAGAAAg < 2:1742397/148‑1 (MQ=255) tatttgTTTAAAACTTTACGGGTCGCAATCTGAACCACGCGCCTGCGCTTCTCGGGGGAAATAAAAAACCCGCTGCCGTCACCGTCAACGGT‑TTTGAGAAATCCACGGTGCGGG‑CGCCCCGGGCAAGCCGGGAGCTTAGCGCCAGAAAgg < 2:897671/149‑1 (MQ=255) attttTTTAAAACTGTACGGGGCGCAATCTGACGCACGCGACTGCGCGTCACTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAAGGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGc < 2:8881295/150‑1 (MQ=255) tttttGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCt > 2:7488565/1‑150 (MQ=255) tttttGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCt > 1:1188030/1‑150 (MQ=255) ttttGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCtt > 2:625831/1‑150 (MQ=255) tttGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTg > 1:3725431/1‑150 (MQ=255) tttGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTg > 1:7244357/1‑150 (MQ=255) ttGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGc > 2:5165437/1‑150 (MQ=255) gTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTc > 1:5800265/1‑150 (MQ=255) tAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCa > 1:7773049/1‑150 (MQ=255) aaCTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGct > 2:4837780/1‑150 (MQ=255) gtcgtGGTCGAAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGACACCTGCACCGGT‑TTTGAGAAATTCCCGGTGCCGG‑CGACGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTc < 1:4543203/146‑1 (MQ=255) gtcgtGGTCCCAATCTGAAGCACGCTACTGCGCGTCCCTCGGCCAAAAAAAAACCCGGTGCTGCCACCTGCACGGGT‑TTTGATAACTTCAGGGTCCCGG‑CCAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTc < 2:1524522/146‑1 (MQ=255) tGGTCGCAATCTGAAGCCCGCGACGGCGCGTCTCTCGGGAAATAAAAAACCCGCTGCCGTCACCTGCACGGGT‑TTTGAGAAATGCCCGGTGCCGG‑CGAAGCGGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTaa < 2:3842610/150‑1 (MQ=255) tGGTCGCAATCTGAAGCACGCGACTGCGCTTCTCTCGGGCAATAAAAAACCCTCTGCAGTCACCTGCAAGGTT‑TTTGATAATTTCACGGTGCCGG‑CGATGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTaa < 2:4492505/150‑1 (MQ=255) tCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGc > 1:2411838/1‑150 (MQ=255) tCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGc > 2:2316998/1‑150 (MQ=255) gCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTg > 1:7380417/1‑150 (MQ=255) cactCTGAAGCACGCGACGGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGTGAAATTCCCGGTGCCGG‑CGAAGCGGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGc < 2:5856668/147‑1 (MQ=255) cAATCTTAAGCACGCGACTGCGCGTCTCTGGGGCAATAAAAAACCCGCGGCTGTAACCTGCAAGGGT‑TTTGAGAAATTCACGGTGCGGG‑CGACGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGc < 2:7743784/150‑1 (MQ=255) cAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGc > 2:6411536/1‑150 (MQ=255) aaTCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCg > 2:7322471/1‑150 (MQ=255) tGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCGTGCTCAGCTCGTCGTAACGCTGCGACTc > 2:5024508/1‑150 (MQ=255) cgcccgcgCCGGCGGGTCTCGCGGCAAAAAAAAAACCCGCGGCTCCCACGTGC‑ACGGG‑TTTTTAAAAATCCCGGGGGCGGCCGACGCCGCCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCt < 1:1943101/146‑1 (MQ=255) aGCCCGCGCGTGCGCGTCTCTCGGGAAATAAAAAACCCGCTGCTGTCACCTGCACGGGG‑TTTGATAAATTCCGGGTGCCGG‑CGACGCCGCCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCt < 1:3627908/150‑1 (MQ=255) gcgACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATAc > 2:2178264/1‑150 (MQ=255) gcgTCTCTCGGGCAATAAAAACCCCGCGGCTGTCACCTGCACGGGG‑TTTGAGAAATTCAGGGTGCGGG‑CGAAGCGGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCt < 2:2515865/150‑1 (MQ=255) gcgTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCt > 2:3223915/1‑150 (MQ=255) gTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGc > 1:6437316/1‑150 (MQ=255) ctctcGGGCAATAAAAAACCCGCTGCAGTCCCGTGCACCGGT‑TTTGATAAATCCACGGGGCCGG‑CTACGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCca < 2:5552098/150‑1 (MQ=255) tctcGGGCAATAAAATACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCTGCTCTTCGTAACGCTGCGACTCGCTGATTGCGGCGTCTGCcag > 2:2891035/1‑150 (MQ=255) ctcGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCcagc > 2:8307986/1‑150 (MQ=255) ctcGGGAAACAAAAAACCCGCTGCCGTCACCTGCACCGGG‑TTTGACAAATCCACGGTGCCGG‑CGACGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCcagc < 2:121897/150‑1 (MQ=255) gaaaTAAAAAACCCGCGGCAGACCCCTGCAAGGGT‑TTGGATCATTACCGGGTGCGGG‑CGACGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCg < 1:2846666/148‑1 (MQ=255) cAATAAAAACCCCGCTGCAGCCCCCTGAACCGGT‑TTTGATAATTTCAGGGGGCCGG‑CCAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCgg < 2:3022224/150‑1 (MQ=255) cAATAAAAAACCCGCTGCAGTCACCTGCACCGGG‑TTTGAGAAATTCACGGTGCCGG‑CGACGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCgg < 1:8275366/150‑1 (MQ=255) cAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCgg < 2:2081695/150‑1 (MQ=255) cAAAAAAAAACCCGCTGCAGTCACCTGCACCGGG‑TTTGAGAAATTCCCGGTGCCGG‑CCAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCgg < 2:4625006/150‑1 (MQ=255) tttctcaaaCCCGTTGCAGGTGACTGCAGCGGG‑TTTTAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCggg > 1:1512500/7‑150 (MQ=38) acaaaaaaCCCGCTGCTGCCACCTGCACCGGT‑TTTTAGAAAGCCCCGGTGCGGG‑CCACGCCGCCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGa < 1:5134005/148‑1 (MQ=255) aaaaaaacCCCGCTGCACTCACCTGCAAGGGT‑TTTCAGAAATCCCCGGGGCCGG‑CGACGCCGCCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGa < 1:558517/148‑1 (MQ=255) tAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAg > 2:5154977/1‑150 (MQ=255) tAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAg > 2:7648660/1‑150 (MQ=255) aaaaaaCCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGt > 1:1038912/1‑150 (MQ=255) aaaaaCCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTc > 2:737530/1‑150 (MQ=255) aaaaaCCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTc > 1:8510360/1‑150 (MQ=255) aaaaCCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTcc > 2:2707096/1‑150 (MQ=255) aaaaCCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTcc > 2:7070950/1‑150 (MQ=255) aaaaCCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTcc > 1:3235488/1‑150 (MQ=255) gCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAg > 1:4086756/1‑150 (MQ=255) gCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAg > 2:5419698/1‑150 (MQ=255) cAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAg > 1:6844347/1‑150 (MQ=255) cAGGCACCGGCAACGGG‑TTTGATAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAg < 2:5988578/150‑1 (MQ=255) gTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGtt < 2:8743159/150‑1 (MQ=255) gTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGtt < 2:8226549/150‑1 (MQ=255) tCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTg > 2:2430719/1‑150 (MQ=255) cACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTga < 2:8362887/150‑1 (MQ=255) aCCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTgac > 2:8796015/1‑150 (MQ=255) ccTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTgacg > 1:6680915/1‑150 (MQ=255) ccggaaCGGGTTTTGAGAACTTCAGGGGGCGGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTgacg < 1:6762312/146‑1 (MQ=255) cTGCAACGGG‑TTTTAGAAATTCACGGGGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTgacga < 2:4332858/150‑1 (MQ=255) cTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTgacga > 1:903061/1‑150 (MQ=255) tGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTgacgac > 1:7638338/1‑150 (MQ=255) tGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTgacgac > 1:7488885/1‑150 (MQ=255) cAACGGG‑TTTGATAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACgg < 2:8202164/150‑1 (MQ=255) cAACGGG‑TTTGAGAAATACACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACgg < 2:4229931/150‑1 (MQ=255) tttGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCa > 2:5611665/1‑150 (MQ=255) tttataaaTTCACGGTGCCGG‑CTAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCAt < 2:3235488/145‑1 (MQ=255) tGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATa < 2:8948019/150‑1 (MQ=255) aaTTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGgcg > 1:7044507/1‑150 (MQ=255) aTTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGgcgc > 1:2729054/1‑150 (MQ=255) aTTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGgcgc > 2:5739019/1‑150 (MQ=255) ttCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGGCGCt < 2:8063868/150‑1 (MQ=255) ccgggcgCCGG‑CGAACCCGCCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGGCGCTGc < 1:5449998/144‑1 (MQ=255) gcttGCCGG‑CTTCGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGGCGCTGCca > 2:6082802/4‑150 (MQ=255) ttGCCGG‑CTTCGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGGCGCTGCcaca > 2:299048/2‑150 (MQ=255) ttGCCGG‑CTTCGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGGCGCTGCcaca > 1:6033887/2‑150 (MQ=255) ttGCCGG‑CTTCGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGGCGCTGCcaca > 1:998253/2‑150 (MQ=255) gg‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGGCGCTGCCAcagcagc < 2:3407357/150‑1 (MQ=255) taaGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGGCGCTGCCACAGCAGCAgg < 1:5200125/149‑1 (MQ=255) | TGCTGTGCCAGACAACTGTTAAGGCGAATTTTAATTTTTGTAAAACTGTACTGGTCGCAATCTGAAGCACGCGACTGCGCGTCTCTCGGGCAATAAAAAACCCGCTGCAGTCACCTGCAACGGG‑TTTGAGAAATTCACGGTGCCGG‑CGAAGCCGGCAAGCCGGGAGCTTAGCGCCAGAAAGGCTTGCTCAGCTCTTCGTAACGCTGCGACTCGCTGATACCGGCGTCTGCCAGCAGGCGGGAGTCCAGGCGAGCCAGTTGACGACGGCTGGTCATACGGCGCTGCCACAGCAGCAGGGT > NC_002947/161584‑161882 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |