| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,947,871 | C→A | 12.9% | intergenic (‑89/+81) | PP_1748 ← / ← PP_1749 | hypothetical protein/acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,947,871 | 0 | C | A | 12.9% | 411.4 / 23.4 | 154 | intergenic (‑89/+81) | PP_1748/PP_1749 | hypothetical protein/acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (69/59); new base A (14/8); total (84/70) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.89e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 155 total aligned reads displayed.
ATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATG > NC_002947/1947724‑1948020 | aTTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AAATGGCCGCAAAGCGGCCCCGGCAATATCgg > 1:7625424/1‑150 (MQ=255)aTTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCgg > 1:2318947/1‑150 (MQ=255) agcagcACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGAGCGGCCGTTTGT‑CGCG‑AAAGGGCCGCCAAGCGGCCCCCGCCAAATAGGCcgcgc > 2:4766464/1‑149 (MQ=255) agcaCGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGAGCGGCCCTGTGG‑AGCG‑AAAGGGCCCCAAAGCCGCCCCCGCCAAAACGGCcgcgcacc > 2:4936710/1‑146 (MQ=255) ccgcgTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGAGCGGCCTGGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTga < 2:3536723/149‑1 (MQ=255) ttGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGATCGGCCCTGTGG‑AGCG‑AAAGGGCCCCAAACAGGCCCCCGCACAATAGGCCCCCAATCGGAGAccca > 2:151137/1‑149 (MQ=255) tgcgaTCGTCGAGTGGGGGTTCGGGGAGTGGTTCGGACTTGTCCAGGCCGCGGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCT‑AAAGGGCCGCAACGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTa < 2:3033516/147‑1 (MQ=37) gagaTCGTCGAGATCGGGTTCGGGGTGTCGTTCGCAGATGTCCAGGCCTCGGGTCGGGTTAAAATTTTGCA‑GTGTTGTGGGAGCGGCCTTGTGT‑CGCG‑AACGGGCCGCAACGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAg < 2:4695278/150‑1 (MQ=38) agaTAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGAGCGGCCTTGTGT‑GGCGCAAAGGGCCCCAACCCGCCCCCGCCAA‑ATCCGCACCCGAGCAGAGAcacaaag > 2:3911705/1‑144 (MQ=255) cGAGATCGGGTTGGGGGTGTCGTTCGGACATGTCCAGGCCTCCGGTCGGTTTAAAATTTTGCC‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AACGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCtt < 2:261506/150‑1 (MQ=38) cGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTGGCA‑GGCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCtt < 2:6521327/150‑1 (MQ=255) gcgttggggTTCGGGTAGTCGTTCGGACCTGTCCTGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGTGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTc < 2:241677/144‑1 (MQ=38) gagtgggggTTCGGGGCGTCGTTCGTACATGTCCAGGCCTCGGGTCGGG‑TAAAATTTTGGACGTCTTGGGGGCGCGGCCTTGTGT‑CGCG‑AAAGGGCCCCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTc < 1:8791587/144‑1 (MQ=37) gagaTCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTc < 2:8097714/150‑1 (MQ=255) gagaTCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTc < 2:8097973/150‑1 (MQ=255) accGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCC‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCa < 2:1961545/148‑1 (MQ=255) aTCGGGTTCGGGGAGTGGTTCGGACTTGTCCCGGCCTCCGGTCGGTTTAAAATTTGGCA‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAACGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCa < 1:6596679/150‑1 (MQ=38) ggggtggggggAGCCGGCCGGACCTGTCCAGGCCTCGGGTCGGGTTAAAATTTTGCA‑GTATTGTGGGAGGGGCATGGTGT‑CGCT‑AACGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCAcc < 1:8120862/143‑1 (MQ=37) ggTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAATTTTTGCA‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCAcccc < 1:6112347/150‑1 (MQ=255) gTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCa > 2:6626439/1‑150 (MQ=255) tCGGGGTGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AACGGGCCGCAACGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCAtt < 2:3850212/150‑1 (MQ=255) gggggCGTGGTTCGGACTTGTCCTGGCCCCGGGTGGGGTTAAAATTTGGCC‑GTCTGGTGGGAGCGGCCTTGTGG‑CGCG‑AACGGGCCCCAACGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTc < 1:1687104/149‑1 (MQ=255) cGGGGAGTCGTTCGGACAGGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTc < 1:8948620/150‑1 (MQ=255) cGGGGAGTCGTTCGGACAGGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGAGCGGCCTGGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTc < 2:4795333/150‑1 (MQ=255) ggggAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTcg < 1:6626439/150‑1 (MQ=255) ggggAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGAGCGGCCGTGTGT‑CGCG‑CAAGGGGCGCCAAGCGGCCCCGGCCATATCGGCAGCGAAGCTGAGCCCCGAGGGGCGCGTCGCCCCCCATTcg > 2:6835506/1‑150 (MQ=255) ggggAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGAAGCGGGCCTGTTT‑GGCG‑CAAAGGCCCCCAACCCGCCCCCGCCAAAAAGGCAGCCCAACAGAGACCCAAAGGGGGCGGCGCAcccccatcg > 2:1586375/1‑145 (MQ=255) ggggAGTCGTTCGGACATGTACAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTTGGGGCCGGCGTTTTT‑GGGG‑GAATGGCCCCCACACCGCCCCCGCCAGATAGGCACCCCACCGGAGACCCCAGGGGCGCGTCGCCCCCCaaaag > 2:4044209/1‑146 (MQ=255) gggTGTCGTTCGGACATGTCCAGGCCTCCGGTGGGGTTAAAATTTTGCA‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTcgc < 1:5206443/150‑1 (MQ=255) gAGTCGTTCGGACAGGTCCAGGCCTCGGGTGGGTTTAAAATTTTGCC‑GTCTTGTGGGCGCGGCCTGGTGT‑CGCG‑AAAGGGCCGAAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGa < 1:5751552/150‑1 (MQ=255) gTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGTGCGGCCGTGTGT‑CGCG‑CAATGGGCGCACAGCGGCCCCCGCCAAATCGGCAGCGCCGCGGGGACCCCCCGGGCGCGTCGCCCCCCAAGGGCGGCACaa > 2:4843139/1‑150 (MQ=255) gTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACaa < 2:4430710/150‑1 (MQ=255) tCGGACATGCCCAGGCCTCGGGTCGGTTTAAATTTTTGCT‑GTCTTGTGGGAGCGGCGTTGTGT‑CGCT‑AATGGGCCGCAATGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAgg < 1:1183468/150‑1 (MQ=37) tttCCTGGCCGCGGGTGGGGTTATTATTTTGCT‑TTGTTTGGGGTGGGGCGTTGTGT‑CGCG‑AATGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTTGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTcc < 2:9147536/148‑1 (MQ=18) ggCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGATCCGGCGTGTGT‑GGCG‑AAAAGGCCGCCAAGCGGCCCCGGCCATAAAGGCAGCCAAGCAGAGAACCCATGGGCGGGTAGCACCCCCATAGGGACCAAAAGCCGCACCCACaaa > 2:2702526/1‑150 (MQ=255) cgggTGGGGTTAAAATTTGGCT‑TTGTGGGGGTCGCGGCCTTGTGT‑CGCG‑AACGGGCCGAAACGGGCCCCCGGCAATATCGGCAGCGACGCTGAGACCCTAGGGGCGATTCGCACCCCATGCGCGACACACGGCCGCTCCCACAAAAAGcc < 2:7044538/148‑1 (MQ=255) gggcgttttAAATTTTTGCC‑GTCTGGTGGGAGCGGCCTTGTGT‑CGCG‑AACGGGCCGCAAAGGGGCCCCGGCAATATCGGCAGCGACGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGa < 2:1489096/143‑1 (MQ=25) tAAAATTTTGCC‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGt < 2:7630823/150‑1 (MQ=255) atttttGCT‑GTCTTGTGGGTGGGGCCGTGTGG‑CGCG‑ACGGGGCCGCAACGCGGCCCCGGCAATCGGGGCAGCGACGGGGAGCCCCTGGGGGGGCTTCGCACCCCTTGCGCGACACACGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAg < 2:4232929/148‑1 (MQ=255) aaTTTTGCA‑GTCTTGTGGGATCGGCCGTGTGT‑GGCG‑CAAGGGCCCCCAAACGGCCCCCGCCAAAAAGGCACCCCCTCAGAGACCCAAGGGGCGCGTCGCACCCCCATAGCGCAACAAAGCCCCACCCACCAAAAACCCCGCAggggtccg > 2:3979826/1‑143 (MQ=255) aaTTTTGCA‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AAAGGGCCCCAAAGCGGCCCCCGCAATATAGGCACCGAAGCTGATAACCGAGGGGCGCGTAGCACCCCAATAGCGACACAAGGCCGCAACCACAAAAAGCCGAGCACTTGTCAg > 2:7595723/1‑150 (MQ=25) tttttGCA‑GTCTTGTGGGTGCGGCCTTGTGT‑CGCG‑AACGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAgg < 2:5140866/149‑1 (MQ=255) ttGCA‑GTCTTGTGGGAGCGGCCGTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCCGCAGCGAAGCTGTGACCCAAGGGGCGCGTCGCACCCCAATCGCGCCACAAGGCCGCTCCCACAAAAAGCCGACCCCGTGTCAGGCCa > 2:5185556/1‑150 (MQ=21) a‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATAGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCCGTTGTCAGGCCAAcgg > 2:6794810/1‑150 (MQ=255) gTCGTGTGGTAGCGG‑CTTGTTTCCGTT‑AAGGGGCCGCAACGGGGCCCGTGAATTTTGGGCAGCGATGATGTTACCGTAGGGGGGCTTCGAACCACTTTCGGGACACATGGCAGCTCCCACAAAAAGCCGAGCAGTTTTCAGGCCAAcggc < 2:8872125/150‑1 (MQ=255) tgttGGGGGCGCGGCGTTGTGG‑CGCG‑AAGGGGCCGAAACGCGGCCCCGGAAATAGCGGCAGCGACGCTGAGACCCTCGGGGCGCTGCGCACCCCATTCGCGACACACGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAAcggcc < 2:227353/148‑1 (MQ=255) ttGTGGGAGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAAcggccgg > 2:8225694/1‑150 (MQ=255) ttGTGGGAGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATAGACGCAGCGACGCTGCGACCCTAGGGGCGCGTCGCACCCCATGCGCGACACAAGGCCGCTCCCACAAATCGCCGAGCCGGTGGCCGGCCAAcggccgg > 2:8225319/1‑150 (MQ=21) ggtcgCGGCCTGGTGG‑CGCG‑AATGGCCCGAAAAGCGGCCCCGGCACTAGCGGCAGGGACGCTGCGCCCCTCGGGGCGCTTCGCACCCCATTCGCCAAACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTAt < 2:3391252/146‑1 (MQ=25) ggAGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCTGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCAATCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATg > 2:3628188/1‑150 (MQ=255) cgCGGCTTTGTGT‑CGCC‑AAAGGGCCGAAAAGCGCCCCCGGAATTACGGGCAGCTAAGCTCAGACCCTCGGGGCTCTTCGCACCCCATTCGCTAAAAAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATggg < 2:7038479/149‑1 (MQ=255) ttGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATCTAAGTTGCGAAGCTGAAAATCTggggctgcttcgcagccctttcgcgacacaaggccgctcccacagaacgaggtctgctcatacacttttagcaggcgccacggccaactc < 2:9042452‑M2/150‑91 (MQ=255) ttGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTCTGGGGAAAcag > 1:5597135/1‑150 (MQ=255) ttGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAAcag > 2:5975459/1‑150 (MQ=255) gtgt‑CGCG‑AACGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAAcagca < 2:7448955/150‑1 (MQ=255) tgt‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAAcagcag > 2:6111002/1‑150 (MQ=255) tgt‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAAcagcag > 2:9101084/1‑150 (MQ=255) gt‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGTGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCACCCACAAAAAGCCGAGCAGTTGTCAGGCCAACCGCCCGCTATGTGGAAACAGCAgg > 1:2547719/1‑150 (MQ=37) gt‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAgg > 2:2738019/1‑150 (MQ=255) gt‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAgg > 1:2547738/1‑150 (MQ=255) t‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATCTAAGTTGCGAAGCTGAAAATCTggggctgcttcgcagccctttcgcgacacaaggccgctcccacagaacgaggtctgctcatacacttttagcaggcgccacggccaactccacac < 2:1999321‑M2/150‑96 (MQ=255) t‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGt > 1:6277886/1‑150 (MQ=255) t‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGt > 1:8842668/1‑150 (MQ=255) t‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGt > 1:2867631/1‑150 (MQ=255) gcg‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCg > 1:1992587/1‑150 (MQ=255) gcg‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCg > 2:3617772/1‑150 (MQ=255) gcg‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCg > 2:3801060/1‑150 (MQ=255) gcg‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCg > 1:4404314/1‑150 (MQ=255) g‑AAAGGGCCGCAAAGCGGCCCCGGCAATCTAAGTTGCGAAGCTGAAAATCTggggctgcttcgcagccctttcgcgacacaaggccacacccacagaacgaggtctgctcatacacttttagcaggcgccacggccaactccacacgctc < 1:2637518‑M2/150‑100 (MQ=255) g‑AAAGGGCCGCAAAGCGGCCCCGGCAATCTAAGTTGCGAAGCTGAAAATCTggggctgcttcgcagccctttcgcgacacaaggccacacccacagaacgaggtctgctcatacacttttagcaggcgccacggccaactccacacgctc < 1:2637399‑M2/150‑100 (MQ=255) g‑AAAGGGCCGCAAAGCGGCCCCGGCAATCTAAGTTGCGAAGCTGAAAATCTggggctgcttcgcagccctttcgcgacacaaggccacacccacagaacgaggtctgctcatacacttttagcaggcgccacggccaactccacacgctc < 1:3079883‑M2/150‑100 (MQ=255) cggggCCGCTTTGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCCACGGCCGGCTATGGGGAAACAGCAGGTCGATaa > 1:8138019/3‑150 (MQ=255) ggggCCGCTTTGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCGTCGCACCCCATGCGCGACCCAAGGCCGCTCCCACAAAAAGCCGAGCAGATGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATaaa > 1:4517872/2‑150 (MQ=38) aGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATaaa > 1:3256768/1‑150 (MQ=255) aGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATaaa > 1:558249/1‑150 (MQ=255) gggCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATaaaa > 2:4935229/1‑150 (MQ=255) ggcccGAAACGCGCCCCCGTAAATAGCGGCCGCTACGCTGAGACCCTCGGGGCGGTCCGCACCCCTTCCGCCACACACGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATaaaa < 2:3082323/147‑1 (MQ=255) ggCCGCAAAGCGGCCCCGGCAATCTAAGTTGCGAAGCTGAAAATCTggggctgcttcgcagccctttcgcgacacaaggccgctcccacagaacgaggtctgctcatacacttttagcaggcgccacggccaactccacacgctcgctct < 1:378438‑M2/150‑105 (MQ=255) ggCCGCAAAGCGGCCCCGGCAATCTAAGTTGCGAAGCTGAAAATCTggggctgcttcgcagccctttcgcgacacaaggccgctcccacagaacgaggtctgctcatacacttttagcaggcgccacggccaactccacacgctcgctct < 1:6982673‑M2/150‑105 (MQ=255) ggCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAAc > 1:3845182/1‑150 (MQ=255) gCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACg > 1:8085203/1‑150 (MQ=255) gCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACg > 2:4133257/1‑150 (MQ=255) ccGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTCTGGGGAAACAGCAGGTCGATAAAACGc > 2:4878639/1‑150 (MQ=255) ccGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAAcagca > 2:3143269/1‑136 (MQ=255) ccGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGc > 1:731668/1‑150 (MQ=255) cGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACaaa > 2:1676875/1‑89 (MQ=255) cAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTcg > 1:1042713/1‑150 (MQ=255) aaGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCGCTGGGGAAACAGCAGGTCGATAAAACGCTcggc > 2:1327936/1‑150 (MQ=255) gCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTcggcgg > 1:779292/1‑150 (MQ=255) ggCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTCGGGGCGCTTCGCACCCCATCCGCGACACACGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTg < 2:7259757/150‑1 (MQ=255) ggCCCCGGCAATATCGCCAGCGACGCTGAGACCCTCGGGGCGCTGCGCACCCCATTCGCGACACACGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTg < 2:8799741/150‑1 (MQ=255) ccccGGAAATCTCGGCAGCTAAGCTGAGACCCTAGGGGCGCTTCGCCCCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTggg < 2:4811920/150‑1 (MQ=255) ggCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATgg < 1:4751819/111‑1 (MQ=255) gCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCg > 2:5841319/1‑150 (MQ=255) cAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCgg > 1:3353083/1‑150 (MQ=255) cAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCgg > 1:2378424/1‑150 (MQ=255) aaTATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGt > 2:2945814/1‑150 (MQ=255) atCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCa < 1:2738019/150‑1 (MQ=255) tCGGCCGCGAAGGTGAGCCCCGCGGGGCGCTCCGCACCCCATGCGCCCCACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCAt < 2:7901350/150‑1 (MQ=255) cGGCAGCTACGCTGACACCCTCGGGGCGCTTCGCACCCAAGTCGCGACACACGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATg < 2:102985/150‑1 (MQ=255) | ATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCA‑GTCTTGTGGGAGCGGCCTTGTGT‑CGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATG > NC_002947/1947724‑1948020 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |