| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,065,157 | C→A | 14.4% | intergenic (+49/‑158) | PP_1838 → / → PP_1839 | membrane protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,065,157 | 0 | C | A | 14.4% | 477.7 / 67.6 | 189 | intergenic (+49/‑158) | PP_1838/PP_1839 | membrane protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (62/99); new base A (8/19); total (71/118) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.19e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.67e-02 | |||||||||||
Only 100 of 191 total aligned reads displayed.
ACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGG > NC_002947/2065008‑2065305 | aCCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGc > 2:9059084/1‑150 (MQ=255)aCCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGc < 1:3501082/150‑1 (MQ=255) cAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCAt > 2:566459/1‑150 (MQ=255) aGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCAtt < 1:8955124/150‑1 (MQ=255) aGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCAtt > 2:2182980/1‑150 (MQ=255) ccGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGc < 1:2182980/150‑1 (MQ=255) ggAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGcac > 2:435982/1‑150 (MQ=255) ggAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGcac > 2:1480367/1‑150 (MQ=255) tCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGG‑GGGGCCGCGCCCACCCGCAGTGCACAGGGtggg > 1:2830778/1‑147 (MQ=255) tCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCCTTGCACAGGGttag > 1:6068705/1‑148 (MQ=255) cAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCgg > 2:5121876/1‑150 (MQ=255) aagaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGa < 2:1678630/150‑1 (MQ=255) aagaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGa < 1:435982/150‑1 (MQ=255) gaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑GTGGCCGCGCCCACAGGCAGTGGACAGGGTTCGGGcc > 1:1410792/1‑150 (MQ=255) agCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAAccct < 1:3296146/150‑3 (MQ=37) agCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCtt < 1:4243618/150‑1 (MQ=255) gAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCa < 2:1275155/150‑1 (MQ=255) aaGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACTCCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAg < 2:2455696/150‑1 (MQ=255) aaGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAg < 2:2455036/150‑1 (MQ=255) aaGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAg < 2:1029826/150‑1 (MQ=255) aGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAAGGTCCGAACCCTGTGCaat < 2:1365778/150‑3 (MQ=255) aGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGACCTGCACAAGGTCCGAACCCTGTGCaat < 1:187141/150‑3 (MQ=37) cGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTc < 1:1179549/150‑1 (MQ=255) cGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGACCTGCACAAGGTCCGAACCCTGTGCaatgc < 2:5345160/150‑5 (MQ=25) gTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTcc > 1:833120/1‑150 (MQ=255) gTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTcc < 1:4805547/150‑1 (MQ=255) gTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAAGGTCCGAACCCtgtg > 1:3921755/1‑143 (MQ=255) tataTCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCaatgcct < 2:3451175/150‑7 (MQ=21) tataTCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCaatgcct < 1:7779858/150‑7 (MQ=21) tataTCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCt < 1:1693724/150‑1 (MQ=255) tataTCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCt < 1:1912624/150‑1 (MQ=255) tataTCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCt < 1:3028577/150‑1 (MQ=255) tagatCCAGCCCGCGACCACGAGCCTGCTGGATAACACCGCCGGCGTGGGGCACGGCACACCGAAGGAACCCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACCGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCt < 2:8204741/147‑1 (MQ=255) tatCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACTGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCtgt < 2:3986605/150‑1 (MQ=255) tatCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCtgt < 1:764834/150‑1 (MQ=255) tatCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCtgt < 1:9059084/150‑1 (MQ=255) tatCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGAGCACGGCACACCGACGGAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCtgt < 1:2634090/150‑1 (MQ=255) atCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCtgtg < 2:2257616/150‑1 (MQ=21) tCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCtgtgg < 2:5915497/150‑2 (MQ=21) tCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCtgtgg < 2:6158745/150‑2 (MQ=21) ccAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCAATGCACAGGGTTCGGACCGTGTGCAGGGCCTGTGCg > 2:4303599/1‑150 (MQ=255) cAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGa < 1:2804699/150‑1 (MQ=18) aGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCATGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑ATGCCCGCTCCCACAGGCAGTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAg > 2:1295915/1‑150 (MQ=255) aGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCCGGTCCTGTGCGAg > 2:6507403/1‑150 (MQ=255) aCCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGG‑GTGGCCCCGCCCACCCGGCGTGCCCAGGGGTGGGGCCATGTGGAGGTGCGGTGGGAGCg > 1:6514442/1‑150 (MQ=255) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCgg < 1:1109207/150‑1 (MQ=18) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCgg < 2:8633549/150‑1 (MQ=18) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCgg < 2:7901000/150‑1 (MQ=18) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCCCAGGCATTGCACCGGGTTCGGACCATGTGCAGGTCCTGTGCGAGCgg > 2:4682809/1‑150 (MQ=255) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCgg < 1:6200051/150‑1 (MQ=255) gcgACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGc < 2:7576084/150‑1 (MQ=255) gACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCaa < 1:8050634/150‑1 (MQ=255) gACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCaa < 2:3104580/150‑1 (MQ=255) ccAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTAGCGGGC‑GTTCCCCCACCCACAGGCCAATCAAACGGTTCGGAACATTTTGAGGTGCGTTGCGAGCGGGCaacc > 2:3814781/1‑148 (MQ=255) aaGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGccc > 2:1363723/1‑150 (MQ=255) tgctgGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACCGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATg < 2:705237/150‑1 (MQ=255) tgctgGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑GTGCCCCCGCCCCCAGGCATTGCACAGGGTTCGGACCGTGTGCTGGGCCAGTGCGAGCGGGCCAGCCCCC‑Gacag > 1:6690716/1‑147 (MQ=255) gctgGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATgg < 2:5055480/150‑1 (MQ=255) aTAACCCCGCCGGCGGGGTGCCCGGCACACCGACGTAAACGGGGGCCGCGTTGCGGCCCTTTCGCGGGC‑TGGCCCGCTCCCACCGGCTTTGCACAGGGTTCGGACCTTGGGCTGGTCCTGTGCGAGGGGGCAAGCCCGC‑GAATGGGcccc < 2:2390573/150‑1 (MQ=37) acacCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑GTTCCCGCCCCCCCACGCAATGCACAGGGTTCGGACCATGTGCAGGTGCGGTGGGAGCGGGGAAGCCCCC‑GCAAGGGCCCCCca > 2:3876313/1‑150 (MQ=255) acCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCAGTCGCGGGC‑GTGCCCGCACCCCCAGGCCGTGCACAGGGGGCGGGCCGTGTGCCGGGCCGGGGCGGGCGGGCAACCCCGC‑GGCTGGGCCCCGcccc > 1:679398/1‑147 (MQ=255) tacttcGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACACGCAGTGCACAGGGGTGGGACCGTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GCATGGGCCCCGCACAAtt > 1:7485601/6‑150 (MQ=38) cgGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCAATAGCGGGCGTTGCCC‑CAACCCCACGCCTTTCCCAGGGTTCGGGCCATGTGCCGGTGCGGTGGGGGCGGGCCAGCCCCCGGAATGGGCCCC‑CACaaaatt > 2:3811691/1‑146 (MQ=255) ggCGTGGTGCACGGCACACCGAATTAACCGGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACCGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTc < 2:1836688/150‑1 (MQ=255) cGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTccc < 2:7516530/150‑1 (MQ=255) ggtgCAGGGCCCCCCGACGTCACCCGGGGCCGCGTTGGGGCCCATGCGCGGGC‑TTGCCCGCGCCCACGGGCATGGCCCAGGGTTCGGACCTTGTGCTGGTCGTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGa < 2:6199661/150‑1 (MQ=37) ggCACGGCACCCCGAAGTAAACCGGGGCCGCGTTGCGGCCCATGCGCGGGC‑TTGCCCGCTCCCACCGGCATTGCACAGGGTTCGGACCTTGGGCTGGTCCTGTGCGAGGGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACt < 2:450688/149‑1 (MQ=38) ggCACACCGATGTAAACCGGGGCCGCGTTGGGGCCCTTTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACCGGGTTCGGACCTTGTGCTGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACa < 1:8224608/150‑1 (MQ=38) gCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCAGTCGCGGGC‑GTGCCCGCTCCCACCGGCAGTGCACAGGGGTCGGACCGTGTGCAGGGCCGGGGCGCGCCGGCCAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGCCAGGACAt > 2:682915/1‑150 (MQ=255) cGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTTCCCCCGCCCACAGGCCTTGCACAGGGTTCGGCCCATGTGGAGGTGCTGTGCGAGCGGGCAAGCCCGC‑GCATGGGGCCCGCCCAAATTTACCGGACTGAACATTATCCCCGCCCCAAgg > 2:5669230/1‑150 (MQ=255) cGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACTGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAgg < 2:2644498/150‑1 (MQ=255) ggggCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCGCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGCCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGt < 2:4845221/150‑1 (MQ=255) ggcgcCCCATGCGCGGGC‑TTCCCCGCCCCCACAGGCTTGGCACCGGGTGCGGACCTTGGGCCGGTCCTGGGCGCGCGGGCACGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCa < 1:5011082/149‑1 (MQ=255) cGGCCCATTCGCGGGC‑TTGCCCCCGCCCACAGGCCATGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGCGCGGGCAACCCCCC‑GAATGGGCCCCCCACAAAATTACCGGCAGGAACAATAACCCCCCCCCAAAGTCAGTTATTCAgg > 2:8079030/1‑150 (MQ=255) ccATGCGGGGGG‑TGGCCCGCTCCCCCCGGCATTGCACTGGGTTCGGACCTTGTGCTGGTCCTGTGCGCGCGGCCACGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATc < 1:6571325/150‑1 (MQ=255) ctttCGGGGGG‑TTGCCCGCTCCCCCTGGCATTGCACAGGGTTGGGACCTTGTGCTGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATca < 2:6263067/148‑1 (MQ=255) cATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATca < 2:6041152/150‑1 (MQ=255) ttCGCGGGC‑TTGCCCGCTCCCTCAGGCATTGCACTGGGTTCGGACCTTGTGCAGGTCCTGTGCGTGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATcact < 2:7876116/150‑2 (MQ=255) ggC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTg > 2:39250/1‑150 (MQ=255) gCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGtt > 1:8124298/1‑150 (MQ=18) cccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTc > 1:3598912/1‑150 (MQ=255) cccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTc < 2:537968/150‑1 (MQ=255) cccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGGGCGAGGGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTc < 2:4878591/150‑1 (MQ=255) ccGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCg > 1:4277324/1‑150 (MQ=18) ccGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCg > 2:7966156/1‑150 (MQ=18) ccGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCg > 2:871758/1‑150 (MQ=18) ccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCg > 2:8866131/1‑150 (MQ=255) gCTCCCACAGGCATTGCACCGGGTTCGGACCTTGTGCCGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGtt < 1:1473879/150‑1 (MQ=255) gCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGtt > 1:1319713/1‑150 (MQ=255) gCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGtt < 2:3309558/150‑1 (MQ=255) tCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGa > 2:4378871/1‑150 (MQ=255) ccccACCGGCCTGGCACTGGGTTCGGACCTTGGGCTGGTCCTGGGCGAGCGGGCACGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGa < 1:2794609/149‑1 (MQ=255) ccACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACt > 1:7324629/1‑150 (MQ=255) ccACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACt > 1:5915462/1‑150 (MQ=255) cacaGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTg > 2:7484014/1‑150 (MQ=255) acaGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTga > 2:704810/1‑150 (MQ=255) acaGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTga > 1:1767061/1‑150 (MQ=255) aGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTgaga > 1:6591350/1‑150 (MQ=255) aGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTgaga > 1:5642554/1‑150 (MQ=255) gCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAgg > 2:1888480/1‑150 (MQ=255) | ACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGG > NC_002947/2065008‑2065305 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |