Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,065,170 T→C 19.8% intergenic (+62/‑145) PP_1838 → / → PP_1839 membrane protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,065,1700TC19.8% 432.4 / 93.6 199intergenic (+62/‑145)PP_1838/PP_1839membrane protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (66/90);  new base C (17/22);  total (85/114)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.51e-02

Only 100 of 206 total aligned reads displayed.

CTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGA  >  NC_002947/2065022‑2065318
                                                                                                                                                     |                                                                                                                                                    
cTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTc                                                                                                                                                     <  2:1853669/150‑1 (MQ=255)
cTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTc                                                                                                                                                     <  1:8088521/150‑1 (MQ=255)
 tCAAGAAGCTGGCAGCGTATATCGAGACCGCGCCCAAGAGCCTGCTGGATAACACCGCCGGCGTGGGGCAGGGCACACCGCAGTACACCGGGGCCGCGTTGCGGCCGATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCg                                                                                                                                                    <  2:1593300/150‑1 (MQ=255)
  cAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCgg                                                                                                                                                   <  1:2553983/150‑1 (MQ=255)
    agaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCCTTGCACAGGGTTCGGAc                                                                                                                                                 >  2:5972406/1‑150 (MQ=255)
     gaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGGGTGCCCGCGCCCACCGGCCTTGCACACGGTTGGGGcc                                                                                                                                                >  1:1411034/1‑150 (MQ=255)
     gaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGAcc                                                                                                                                                <  2:2002221/150‑1 (MQ=255)
       agCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCtt                                                                                                                                              <  1:4243618/150‑1 (MQ=255)
          tGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTtgtg                                                                                                                                           <  2:2921341/150‑1 (MQ=255)
           ggAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGc                                                                                                                                          <  2:3850886/150‑1 (MQ=255)
           ggAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGc                                                                                                                                          >  2:1255013/1‑150 (MQ=255)
             aaGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAg                                                                                                                                        <  2:4473240/150‑1 (MQ=255)
             aaGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAg                                                                                                                                        <  2:2455036/150‑1 (MQ=255)
             aaGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAg                                                                                                                                        <  1:625918/150‑1 (MQ=255)
             aaGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAg                                                                                                                                        <  2:4173987/150‑1 (MQ=255)
              aGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAAGGTCCGAACCCTGTGCaat                                                                                                                                       <  2:1365778/150‑3 (MQ=255)
              aGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGACCTGCACAAGGTCCGAACCCTGTGCaat                                                                                                                                       <  1:187141/150‑3 (MQ=37)
                cGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGACCTGCACAAGGTCCGAACCCTGTGCaatgc                                                                                                                                     <  2:5345223/150‑5 (MQ=25)
                 gTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAAGGTCCGAACCCtgtg                                                                                                                                           <  2:3921755/143‑1 (MQ=255)
                 gTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAAGGTCCGAACCCtgtg                                                                                                                                           >  1:3921755/1‑143 (MQ=255)
                  tataTCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCt                                                                                                                                   <  1:1912624/150‑1 (MQ=255)
                  tataTCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCt                                                                                                                                   <  1:1693724/150‑1 (MQ=255)
                  tagatCCAGCCCGCGACCACGAGCCTGCTGGATAACACCGCCGGCGTGGGGCACGGCACACCGAAGGAACCCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACCGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCt                                                                                                                                   <  2:8204741/147‑1 (MQ=255)
                    tatCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCtgt                                                                                                                                 <  1:9059084/150‑1 (MQ=255)
                    tatCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCtgt                                                                                                                                 <  1:764834/150‑1 (MQ=255)
                      tCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCCTTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGc                                                                                                                               >  2:6988968/1‑150 (MQ=255)
                        cAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGTACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGa                                                                                                                             <  2:3983616/150‑1 (MQ=255)
                        cAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGa                                                                                                                             <  1:2804699/150‑1 (MQ=18)
                         aGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCATGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCATGCCCGCTCCCACAGGCAGTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAg                                                                                                                            >  2:1295915/1‑150 (MQ=255)
                           aCCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGGGTGGCCCCGCCCACCCGGCGTGCCCAGGGGTGGGGCCATGTGGAGGTGCGGTGGGAGCg                                                                                                                          >  1:6514442/1‑150 (MQ=255)
                            ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCgg                                                                                                                         <  2:7895621/150‑1 (MQ=18)
                            ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCgg                                                                                                                         <  2:8633549/150‑1 (MQ=18)
                            ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCgg                                                                                                                         <  1:1109207/150‑1 (MQ=18)
                            ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCgg                                                                                                                         <  2:2587706/150‑1 (MQ=255)
                            ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCgg                                                                                                                         <  2:3351463/150‑1 (MQ=255)
                            ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCgg                                                                                                                         <  1:1255013/150‑1 (MQ=255)
                            ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCgg                                                                                                                         <  1:2638019/150‑1 (MQ=255)
                            ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCgg                                                                                                                         <  2:6412660/150‑1 (MQ=255)
                            ccGCGACCAAGAGCCTGCTGGATAACACCGCCAGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCgg                                                                                                                         <  2:5121566/150‑1 (MQ=255)
                              gcgACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCggcc                                                                                                                       <  1:4623018/150‑3 (MQ=255)
                              gcgACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGc                                                                                                                       <  2:7576084/150‑1 (MQ=255)
                                gACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCaa                                                                                                                     <  1:8050365/150‑1 (MQ=255)
                                gACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCaa                                                                                                                     <  1:3162889/150‑1 (MQ=255)
                                    aaGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCTTTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGGGAGCGGGCAAGccc                                                                                                                 <  1:1399911/150‑1 (MQ=255)
                                    aaGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGccc                                                                                                                 >  2:1363723/1‑150 (MQ=255)
                                           tgctgGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCGTGCCCCCGCCCCCAGGCATTGCACAGGGTTCGGACCGTGTGCTGGGCCAGTGCGAGCGGGCCAGCCCCCGacag                                                                                                          >  1:6690716/1‑147 (MQ=255)
                                                 aTAACCCCGCCGGCGGGGTGCCCGGCACACCGACGTAAACGGGGGCCGCGTTGCGGCCCTTTCGCGGGCTGGCCCGCTCCCACCGGCTTTGCACAGGGTTCGGACCTTGGGCTGGTCCTGTGCGAGGGGGCAAGCCCGCGAATGGGcccc                                                                                                    <  2:2390573/150‑1 (MQ=37)
                                                   aaCACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCAATCGCGGGCGTGGCCCCACCCACAGGCAATTGAAAGGGGTGGGACCATTTGGAGGTGCAGTGCGGGCGGGCAACCCCCCGAAAGGGcccccc                                                                                                  >  2:2251833/1‑148 (MQ=255)
                                                      acCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCAGTCGCGGGCGTGCCCGCACCCCCAGGCCGTGCACAGGGGGCGGGCCGTGTGCCGGGCCGGGGCGGGCGGGCAACCCCGCGGCTGGGCCCCGcccc                                                                                               >  1:679398/1‑147 (MQ=255)
                                                      acCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCAATCGCGGGCGTGCCCGCACCCACACGCCTTGCCCCGGGTGCGGGCCATTTGCCGGGCCGGGGCGGGCGGGCCAGCCCCCGCAAGGGCCCCCcaca                                                                                               >  1:8276059/1‑150 (MQ=255)
                                                         tacttcGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACACGCAGTGCACAGGGGTGGGACCGTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGCATGGGCCCCGCACAAtt                                                                                            >  1:7485601/6‑150 (MQ=38)
                                                         gccgGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAAtt                                                                                            <  2:6089306/150‑1 (MQ=255)
                                                           cgGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCAATAGCGGGCGTGCCCCCGCCCACCCGCCATTGAACAGGTTAGGGCCGTGTGCCCGGGCAGTGCGGGCGGGCCACCCCCCCCAAGGGCCCCCCCCaaaatt                                                                                          >  2:3811716/1‑146 (MQ=255)
                                                              cGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTccc                                                                                       <  2:7516530/150‑1 (MQ=255)
                                                                 ggtgCAGGGCCCCCCGACGTCACCCGGGGCCGCGTTGGGGCCCATGCGCGGGCTTGCCCGCGCCCACGGGCATGGCCCAGGGTTCGGACCTTGTGCTGGTCGTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGa                                                                                    <  2:6199661/150‑1 (MQ=37)
                                                                   tgCCCGGCACACCTACGTAAACCGGGGCCGCGTGGGGGCCCATTCGCGGGCTTGCCCGCTCCCACCGGCATGGCACAGGTTTCGGACCTTGGGCCGGTCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACt                                                                                  <  2:455846/150‑1 (MQ=37)
                                                                      aCGGCACACCGAGGTACCCGGGGGCCGCGTTGGGGCCCATTCGGGGGCTGGCCCGCTCCCACAGGCATTGCCCCGGGTGGGGACCTTGTGCCGGTCGTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGaa                                                                               <  2:3143089/150‑1 (MQ=37)
                                                                      aCGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTGGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGaa                                                                               <  2:4369721/150‑1 (MQ=255)
                                                                        ggCACACCCTCGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCCCTGGCTTTGCACAGGTTTCGGACGTTGTGCCGGTCCTGGGCGAGCGGCCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACa                                                                             <  1:8224438/150‑1 (MQ=38)
                                                                         gCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCAGTCGCGGGCGTGCCCGCTCCCACCGGCAGTGCACAGGGGTCGGACCGTGTGCAGGGCCGGGGCGCGCCGGCCAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGCCAGGACAt                                                                            >  2:682915/1‑150 (MQ=255)
                                                                             acCGAAGTAAACCGGGGCCGGGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCTTTGCACAGGGTTCGGACCTTGTGCTGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATc                                                                        <  1:2994458/150‑1 (MQ=255)
                                                                                         cGGGGCCGCGTTGCGGCCCATTCGCGGGCTTTCCCCCGCCCACAGGCCTTGCACAGGGTTCGGCCCATGTGGAGGTGCTGTGCGAGCGGGCAAGCCCGCGCATGGGGCCCGCCCAAATTTACCGGACTGAACATTATCCCCGCCCCAAgg                                                            >  2:5669230/1‑150 (MQ=255)
                                                                                          ggggCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCGCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGCCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGt                                                           <  2:4845221/150‑1 (MQ=255)
                                                                                                    ggcgcCCCATGCGCGGGCTTCCCCGCCCCCACAGGCTTGGCACCGGGTGCGGACCTTGGGCCGGTCCTGGGCGCGCGGGCACGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCa                                                 <  1:5011082/149‑1 (MQ=255)
                                                                                                      cGGCCCATTCGCGGGCTTGCCCCCGCCCACAGGCCATGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGCGCGGGCAACCCCCCGAATGGGCCCCCCACAAAATTACCGGCAGGAACAATAACCCCCCCCCAAAGTCAGTTATTCAgg                                               >  2:8079030/1‑150 (MQ=255)
                                                                                                          ccATGCGGGGGGTGGCCCGCTCCCCCCGGCATTGCACTGGGTTCGGACCTTGTGCTGGTCCTGTGCGCGCGGCCACGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATc                                           <  1:6571325/150‑1 (MQ=255)
                                                                                                                         cccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTc                            <  2:5393560/150‑1 (MQ=255)
                                                                                                                         cccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGGGCGAGGGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTc                            <  2:4878591/150‑1 (MQ=255)
                                                                                                                          ccGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCg                           >  2:871758/1‑150 (MQ=18)
                                                                                                                          ccGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCg                           >  2:7966156/1‑150 (MQ=18)
                                                                                                                          ccGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCg                           >  1:4277324/1‑150 (MQ=18)
                                                                                                                          ccGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCg                           >  2:3604671/1‑150 (MQ=18)
                                                                                                                          ccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCg                           >  2:8866131/1‑150 (MQ=255)
                                                                                                                            gCTCCCACAGGCATTGCACCGGGTTCGGACCTTGTGCCGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGtt                         <  1:1473879/150‑1 (MQ=255)
                                                                                                                            gCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGtt                         >  1:1319713/1‑150 (MQ=255)
                                                                                                                            gCTCCCACAGGAATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGtt                         <  1:6076458/150‑1 (MQ=255)
                                                                                                                                ccACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACt                     >  1:3412166/1‑150 (MQ=255)
                                                                                                                                ccACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACt                     >  1:5915462/1‑150 (MQ=255)
                                                                                                                                  acaGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTga                   >  1:1767061/1‑150 (MQ=255)
                                                                                                                                  acaGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTga                   <  1:7255014/150‑1 (MQ=255)
                                                                                                                                  acaGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTga                   >  2:7255014/1‑150 (MQ=255)
                                                                                                                                  acaGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATAACACACCTGGTGTTCGTTGACTga                   >  2:704874/1‑150 (MQ=255)
                                                                                                                                     aGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTgaga                 >  1:5642554/1‑150 (MQ=255)
                                                                                                                                     aGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTgaga                 >  1:6591350/1‑150 (MQ=255)
                                                                                                                                        acctGCACAAGGTCCGAACCCTGTGCAATGCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAggg              >  2:6164337/4‑150 (MQ=25)
                                                                                                                                           tGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTcc           >  2:6622273/1‑150 (MQ=25)
                                                                                                                                            gCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCg          >  1:3741087/1‑150 (MQ=255)
                                                                                                                                            gCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCg          >  1:8380173/1‑150 (MQ=25)
                                                                                                                                             cacaGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGTCTGAGAGGGTCCGt         >  2:4695180/1‑150 (MQ=255)
                                                                                                                                              acaGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGtt        >  1:3653104/1‑150 (MQ=255)
                                                                                                                                              acaGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGtt        >  2:686378/1‑150 (MQ=255)
                                                                                                                                               caGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATAGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTc       >  2:5338703/1‑150 (MQ=255)
                                                                                                                                                aGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCACGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCa      >  1:4282890/1‑150 (MQ=255)
                                                                                                                                                 gggTTCGGACCTTGTGCAGGTCCTGGGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCaa     <  2:5751492/150‑1 (MQ=255)
                                                                                                                                                  ggTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAAt    >  2:5217314/1‑150 (MQ=255)
                                                                                                                                                    ttCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGa  >  1:7707002/1‑150 (MQ=255)
                                                                                                                                                    ttCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGa  >  1:2018025/1‑150 (MQ=255)
                                                                                                                                                    ttCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGa  >  2:1084811/1‑150 (MQ=255)
                                                                                                                                                    ttCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGa  >  2:1805926/1‑150 (MQ=255)
                                                                                                                                                    ttCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGa  >  2:2294474/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
CTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGA  >  NC_002947/2065022‑2065318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: