| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,065,173 | G→A | 19.2% | intergenic (+65/‑142) | PP_1838 → / → PP_1839 | membrane protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,065,173 | 0 | G | A | 19.2% | 447.6 / 92.0 | 198 | intergenic (+65/‑142) | PP_1838/PP_1839 | membrane protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (73/87); new base A (16/22); total (89/109) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.29e-01 | |||||||||||
Only 100 of 206 total aligned reads displayed.
CAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGA > NC_002947/2065024‑2065322 | cAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCgg > 2:5121876/1‑150 (MQ=255) aagaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGa < 1:5121876/150‑1 (MQ=255) aagaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGa < 1:435982/150‑1 (MQ=255) aagaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGa < 2:1678630/150‑1 (MQ=255) agaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCCTTGCACAGGGTTCGGAc > 2:5972406/1‑150 (MQ=255) gaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGAcc < 2:2002221/150‑1 (MQ=255) gaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAAGGTCCGAAcc < 2:8053774/150‑1 (MQ=255) gaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑GTGGCCGCGCCCACAGGCAGTGGACAGGGTTCGGGcc > 1:1410792/1‑150 (MQ=255) agCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAAccct < 1:3296146/150‑3 (MQ=37) agCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCtt < 1:4243702/150‑1 (MQ=255) ggAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGc > 2:1255013/1‑150 (MQ=255) aaGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAg < 1:182005/150‑1 (MQ=255) aaGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAg < 2:2455036/150‑1 (MQ=255) aaGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAg < 1:7638584/150‑1 (MQ=255) aaGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAg < 1:625918/150‑1 (MQ=255) aGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAAGGTCCGAACCCTGTGCaat < 2:1365778/150‑3 (MQ=255) aGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGACCTGCACAAGGTCCGAACCCTGTGCaat < 1:187146/150‑3 (MQ=37) cGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGACCTGCACAAGGTCCGAACCCTGTGCaatgc < 2:5345223/150‑5 (MQ=25) gTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTcc < 1:6612391/150‑1 (MQ=255) gTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTcc < 1:4805547/150‑1 (MQ=255) gTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTcc < 1:1979689/150‑1 (MQ=255) tataTCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCaatgcct < 2:3451175/150‑7 (MQ=21) tataTCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCaatgcct < 1:7779858/150‑7 (MQ=21) tataTCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCt < 1:3028577/150‑1 (MQ=255) tagatCCAGCCCGCGACCACGAGCCTGCTGGATAACACCGCCGGCGTGGGGCACGGCACACCGAAGGAACCCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACCGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCt < 2:8204741/147‑1 (MQ=255) tatCCAGCCCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCtgt < 1:764942/150‑1 (MQ=255) tatCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACTGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCtgt < 2:3986605/150‑1 (MQ=255) tatCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCtgt < 1:9059084/150‑1 (MQ=255) tatCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGAGCACGGCACACCGACGGAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCtgt < 1:2634090/150‑1 (MQ=255) ccAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCAATGCACAGGGTTCGGACCGTGTGCAGGGCCTGTGCg > 2:4303599/1‑150 (MQ=255) aGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCATGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑ATGCCCGCTCCCACAGGCAGTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAg > 2:1295915/1‑150 (MQ=255) gACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGc < 1:1718216/150‑1 (MQ=21) aCCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGG‑GTGGCCCCGCCCACCCGGCGTGCCCAGGGGTGGGGCCATGTGGAGGTGCGGTGGGAGCg > 1:6514442/1‑150 (MQ=255) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCgg < 2:7901000/150‑1 (MQ=18) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCgg < 2:8633889/150‑1 (MQ=18) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCgg < 1:1109207/150‑1 (MQ=18) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCCCAGGCATTGCACCGGGTTCGGACCATGTGCAGGTCCTGTGCGAGCgg > 2:4682809/1‑150 (MQ=255) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCgg < 2:2587706/150‑1 (MQ=255) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCgg < 1:1255013/150‑1 (MQ=255) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCgg < 1:4045014/150‑1 (MQ=255) gACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCaa < 1:8050634/150‑1 (MQ=255) gACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCaa < 2:3104580/150‑1 (MQ=255) ccAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGG‑TTGCCCGCTCCCACAGGCCTTGGACAGGGGTCGGACCTTGTGCAGGTACTGGGGGGGCGGGCAAGc > 1:6777960/1‑150 (MQ=255) ccAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTAGCGGGC‑GTTCCCCCACCCACAGGCCAATCAAACGGTTCGGAACATTTTGAGGTGCGTTGCGAGCGGGCaacc > 2:3814781/1‑148 (MQ=255) aaGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGccc > 2:1363723/1‑150 (MQ=255) gagCCTGCTGGGTAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCcgc < 2:4848212/150‑1 (MQ=255) ctgctgGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCAATCGCGGGC‑GGGCCCCCGCCCCCACGCCATGCCCACGGGTCGGGCCGTTTTGAGGTGCAGTGCGCGCCGGCCAcccccccgca > 1:2809286/1‑144 (MQ=255) tgctgGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACCGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATg < 2:705237/150‑1 (MQ=255) tgctgGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑GTGCCCGCGCCCCCAGGCAATGCACAGGGTTAGGACCATGTGCAGGTCCAGTGCGGGCGGGCAAGCCCCC‑GCATg > 1:1504333/1‑150 (MQ=255) gctgGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATgg < 2:5055480/150‑1 (MQ=255) aTAACCCCGCCGGCGGGGTGCCCGGCACACCGACGTAAACGGGGGCCGCGTTGCGGCCCTTTCGCGGGC‑TGGCCCGCTCCCACCGGCTTTGCACAGGGTTCGGACCTTGGGCTGGTCCTGTGCGAGGGGGCAAGCCCGC‑GAATGGGcccc < 2:2390573/150‑1 (MQ=37) aaCACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCAATCGCGGGC‑GTGGCCCCACCCACAGGCAATTGAAAGGGGTGGGACCATTTGGAGGTGCAGTGCGGGCGGGCAACCCCCC‑GAAAGGGcccccc > 2:2251833/1‑148 (MQ=255) acacCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑GTTCCCGCCCCCCCACGCAATGCACAGGGTTCGGACCATGTGCAGGTGCGGTGGGAGCGGGGAAGCCCCC‑GCAAGGGCCCCCca > 2:3876313/1‑150 (MQ=255) acCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCAATCGCGGGC‑GTGCCCGCACCCACACGCCTTGCCCCGGGTGCGGGCCATTTGCCGGGCCGGGGCGGGCGGGCCAGCCCCC‑GCAAGGGCCCCCcaca > 1:8276059/1‑150 (MQ=255) gccgGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAAtt < 2:6089306/150‑1 (MQ=255) cgGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCAATAGCGGGCGTTGCCC‑CAACCCCACGCCTTTCCCAGGGTTCGGGCCATGTGCCGGTGCGGTGGGGGCGGGCCAGCCCCCGGAATGGGCCCC‑CACaaaatt > 2:3811691/1‑146 (MQ=255) ggtgCAGGGCCCCCCGACGTCACCCGGGGCCGCGTTGGGGCCCATGCGCGGGC‑TTGCCCGCGCCCACGGGCATGGCCCAGGGTTCGGACCTTGTGCTGGTCGTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGa < 2:6199661/150‑1 (MQ=37) ggCACGGCACCCCGAAGTAAACCGGGGCCGCGTTGCGGCCCATGCGCGGGC‑TTGCCCGCTCCCACCGGCATTGCACAGGGTTCGGACCTTGGGCTGGTCCTGTGCGAGGGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACt < 2:450688/149‑1 (MQ=38) aCGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TGGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGaa < 2:4369721/150‑1 (MQ=255) ggCACACCCTCGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCCCTGGCTTTGCACAGGTTTCGGACGTTGTGCCGGTCCTGGGCGAGCGGCCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACa < 1:8224438/150‑1 (MQ=38) gCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCAGTCGCGGGC‑GTGCCCGCTCCCACCGGCAGTGCACAGGGGTCGGACCGTGTGCAGGGCCGGGGCGCGCCGGCCAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGCCAGGACAt > 2:682915/1‑150 (MQ=255) acCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCCATGCACAGGGTTCGGTCCGTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAAAGGGCCCCGCACAAATTTCCCGGACTGAACATTATc > 2:8788770/1‑150 (MQ=37) cGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCACCCACAGGCATTGCACAGGGGTCGGACCGTGTGCAGGTCCTGTGCGAGCGGGCCAGCCCGC‑GAATGGGCCCCGCCCAATTTTCCCGGACGGAACATTATccc > 2:7550184/1‑150 (MQ=38) cGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTTCCCCCGCCCACAGGCCTTGCACAGGGTTCGGCCCATGTGGAGGTGCTGTGCGAGCGGGCAAGCCCGC‑GCATGGGGCCCGCCCAAATTTACCGGACTGAACATTATCCCCGCCCCAAgg > 2:5669230/1‑150 (MQ=255) ccATGCGGGGGG‑TGGCCCGCTCCCCCCGGCATTGCACTGGGTTCGGACCTTGTGCTGGTCCTGTGCGCGCGGCCACGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATc < 1:6571325/150‑1 (MQ=255) ctttCGGGGGG‑TTGCCCGCTCCCCCTGGCATTGCACAGGGTTGGGACCTTGTGCTGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATca < 2:6263067/148‑1 (MQ=255) ttCGCGGGC‑TTGCCCGCTCCCTCAGGCATTGCACTGGGTTCGGACCTTGTGCAGGTCCTGTGCGTGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATcact < 2:7876116/150‑2 (MQ=255) ggC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTg > 2:39250/1‑150 (MQ=255) ggtttGCCCGCTCCCCCTGTCTTTGCACTGGTTTCGGACGTTTTGCTGGTCGTGTGCGCGGGGGCACGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTg < 1:566459/147‑1 (MQ=255) gCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGtt > 1:3664921/1‑150 (MQ=18) cccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTc > 1:3598912/1‑150 (MQ=255) cccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTc < 2:5393560/150‑1 (MQ=255) ccGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATTCCTGTGGGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCg > 1:4277709/1‑150 (MQ=18) gCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGtt < 2:3309558/150‑1 (MQ=255) gCTCCCACAGGAATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGtt < 1:6076458/150‑1 (MQ=255) ccccACCGGCCTGGCACTGGGTTCGGACCTTGGGCTGGTCCTGGGCGAGCGGGCACGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGa < 1:2794609/149‑1 (MQ=255) ccACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACt > 1:7324629/1‑150 (MQ=255) cacaGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTg > 2:7484014/1‑150 (MQ=255) acaGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTga > 2:4767445/1‑150 (MQ=255) acaGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTga > 2:704810/1‑150 (MQ=255) aggacctGCACAAGGTCCGAACCCTGTGCAAGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTgaga > 1:1425148/7‑150 (MQ=37) ggacctGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGagag > 1:6996028/6‑150 (MQ=25) acctGCACAAGGTCCGAACCCTGTGCAATGCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAggg > 2:6164337/4‑150 (MQ=25) tGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGC‑GAATGGGCCGCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTcc > 2:6622273/1‑150 (MQ=25) gCACTGGTTTCGGCCCTTGGGCTGCTCGTGTGCGCCGGGGCAACCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCg < 1:3811691/150‑1 (MQ=255) gCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCg > 1:8380173/1‑150 (MQ=25) gCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCg > 1:1368151/1‑150 (MQ=25) acaGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGtt > 2:686378/1‑150 (MQ=255) caGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATAGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTc > 2:5338703/1‑150 (MQ=255) aGGGTTCGGACATTGTGAAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCACGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCa > 1:2469678/1‑150 (MQ=255) gggTTCGGACCTTGTGCAGGTCCTGGGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCaa < 2:5751492/150‑1 (MQ=255) ggTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAAt > 2:5217314/1‑150 (MQ=255) ttCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGa > 2:2294474/1‑150 (MQ=255) ttCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGa > 2:1084811/1‑150 (MQ=255) ttCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGa > 2:1805926/1‑150 (MQ=255) ggACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAag > 2:6927327/1‑150 (MQ=255) ggACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAag > 2:8114781/1‑150 (MQ=255) gACCTTGTGCAGGTCGTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAaga < 1:1295915/150‑1 (MQ=255) gACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAaga < 2:2830778/150‑1 (MQ=255) gACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAaga > 2:8523691/1‑150 (MQ=255) | CAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGC‑GAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGA > NC_002947/2065024‑2065322 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |