| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,414,889 | A→C | 5.4% | intergenic (+188/‑233) | rlmM → / → PP_2114 | 23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,414,889 | 0 | A | C | 5.4% | 693.3 / 19.0 | 229 | intergenic (+188/‑233) | rlmM/PP_2114 | 23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase |
| Reads supporting (aligned to +/- strand): ref base A (136/79); new base C (10/4); total (146/83) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 233 total aligned reads displayed.
TCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAA > NC_002947/2414740‑2415038 | tctgcttTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑Ta < 1:1460030/150‑1 (MQ=255) ttttGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTccc > 2:7520595/1‑150 (MQ=40) gCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGa < 1:3764136/150‑1 (MQ=37) gTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCa > 2:828168/1‑150 (MQ=35) ttGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCaa > 2:8569272/1‑150 (MQ=34) aaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCTTGCGAAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCA‑GGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAg > 2:146547‑M1/61‑150 (MQ=255) ttCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGccc > 2:2562942/1‑150 (MQ=37) ttCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGccc < 2:5296439/150‑1 (MQ=37) accgtcggctcccatcatccggcccctacgctacgctccggggtcccctcactctGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGa > 1:2968202‑M1/56‑150 (MQ=255) accgtcggctcccatcatccggcccctacgctacgctccggggtcccctcactccGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGa > 2:4440661‑M1/56‑150 (MQ=255) cgctgcgctcctatcatccggcccctgcgctacgctccggggttccctcgctccGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGa > 1:4575851‑M1/55‑150 (MQ=255) cgctgcgcgcctatcatccggcccctgcgctacgctccggggttccctcgctccGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGa > 2:8100507‑M1/55‑150 (MQ=255) ctgcgctcctatcatccggcccctgcgctacgctccggggttccctcgctccGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGc > 2:3333661‑M1/53‑150 (MQ=255) tggctcctatcatccggcccctgcgctacgctccggggttccctcgctctGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAg > 2:4286364‑M1/51‑150 (MQ=255) tggctcctatcatccggcccctgcgctacgctccggggttccctcgctcgGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGCGAg > 2:4657222‑M1/51‑150 (MQ=255) gcgcgATAGTTGAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGTAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAg < 2:3498168/150‑1 (MQ=21) gcgcgATAGTTCAGGCGACGCAGATTGCGACTTCTGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAg < 1:6239819/150‑1 (MQ=37) cgcgATCGTTCCGGCGCCGCAGATTGCGACTTCAGGAGGCCGAGCGTCGGGCTTGCGAAGGGAGGTGACGGGCATGGAGGCCCGTCAAGCGCTG‑AGGCCCCAGGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAgg < 2:3055385/150‑1 (MQ=11) cgcgATCGTTCCGGCGACGCAGATTGCGACTTCCGGTGGCCGCGCGTTGGGCTTGGGACGGGAGGTGACGGGCTTGGATGCCCGTCAAGCGCTG‑TGGCCCCATGGATGGGGCCTGCTGCGCT‑TCCTCCCGGGAGCAAGCCCGGAGCGAgg < 2:1548737/150‑1 (MQ=11) gTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAAcccc > 1:6533246/1‑150 (MQ=37) ttCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCg > 1:8736318/1‑150 (MQ=37) gccGCAGTTTGCGACTTCCGGTGGCCGTGGGTTGGGGTTGCGATGGGAGGTGAGGGGCTTGGATGCCCGTCAAGCGCTG‑CGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCGGGGAGCAAGCCGGGAGCGAGGGAACCCCGGAGCGTa < 1:9000615/148‑1 (MQ=11) gACGCTGATGGCGACTTCTGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCTTGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTa < 2:8892348/150‑1 (MQ=255) gACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTa > 1:7209704/1‑150 (MQ=37) cGCAGATTGCGACTTCCGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCCTGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAgc < 2:5053984/150‑1 (MQ=255) gCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAgcg > 2:8292273/1‑150 (MQ=37) cttttGCGACTCCTGGTGGCCGAGCTTTGGGCTTGCGTTGGGTGGTGAGGGGCATGGTTGCCCGTCATGCGCTG‑CGGCCCCCTGTTTGGGGCCTGCAGCGCT‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCa < 2:281389/147‑1 (MQ=11) aGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATCCATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGACCCCCGGAGCGTAGCGCa > 1:1584807/1‑150 (MQ=255) gACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCg > 1:7450712/1‑150 (MQ=37) ttCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGgat > 1:7187504/1‑150 (MQ=37) aggaggCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGgatgat > 1:6270408/1‑150 (MQ=37) aggaggCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGgatgat > 2:1063523/1‑150 (MQ=37) ggaggCCGAGCGTAGGGGTTGCGAAGGGAGGTGACGGGCATGGATGCCCTTCAAGCGCTG‑CGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATa < 2:6936505/150‑1 (MQ=255) ggaggCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATa < 2:7285620/150‑1 (MQ=38) aggCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAgg < 2:6858659/150‑1 (MQ=37) aggCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAgg > 1:9083181/1‑150 (MQ=37) ggCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGa < 2:6616415/150‑1 (MQ=37) gCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAg > 2:8076641/1‑150 (MQ=37) ccGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAga > 1:1030845/1‑149 (MQ=37) gAGCGTTGGGCTTGCTATGGGTGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAgcgc < 2:215082/150‑1 (MQ=255) GGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGtttt < 1:7777185‑M1/150‑1 (MQ=255) GGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGtttt < 1:6049116‑M1/150‑1 (MQ=255) ggtggCGAGGGGTGGTGCGGGGCTTGGCGGCCCGCCACGCGCGG‑CGGCCCCTTGGTGGGGGCCGGCCGCGCG‑TACCCCGGGGACCACGCCGGGGGCGCGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGttttt < 1:5553562/146‑1 (MQ=9) gAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATTGGGCCTGCAGCGCG‑TACACCCCGGAGCAAGCCCGGAGCCAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCACCGTTTTTTTGTTa > 1:8442650/1‑150 (MQ=14) gggAGGTGACGGGCAGGGATGCCCGCCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCACGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACtt < 2:7828923/150‑1 (MQ=255) ggTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTg > 1:1334605/1‑150 (MQ=39) ttGACGGGCATCCATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGt > 1:2445877/2‑150 (MQ=255) ttGACGGGCATCCATGCCCGTCAAGCGCTG‑AGGCCCCAGGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGt > 2:8462255/2‑150 (MQ=255) tGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTc > 2:2069225/1‑150 (MQ=39) gACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATa < 2:3789815/118‑1 (MQ=35) gACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATa > 1:3789815/1‑118 (MQ=35) gACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTcg > 2:2492610/1‑150 (MQ=39) gACGGGCATCCATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTcg > 2:5744219/1‑150 (MQ=255) aCGGGCATCCATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTcgc > 1:6948419/1‑150 (MQ=255) aCGGGCATCCATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTcgc > 1:8924422/1‑150 (MQ=255) aCGGGCATCCATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTcgc > 2:2760303/1‑150 (MQ=255) gCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGttt < 2:7365589/150‑1 (MQ=39) gCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGgtt > 2:6449953/1‑150 (MQ=255) cATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTg > 2:6088398/1‑150 (MQ=39) cATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTg > 1:6400065/1‑150 (MQ=39) cATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTg > 1:1800333/1‑150 (MQ=39) cATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTg > 2:7699401/1‑150 (MQ=39) aTGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGa > 2:7246549/1‑150 (MQ=39) gATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGACCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACaa > 2:1983360/1‑150 (MQ=11) gCCCGTCATGCGGTG‑CGGCCCATTGTTTGGGGCCTGCTGCGCG‑TCCCCCCGGGAGCACGCCCGGCGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACaaaaa < 1:1285225/150‑1 (MQ=14) cccGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAg > 1:3404980/1‑150 (MQ=39) ccGTCACGCGCTG‑AGGCCCCATGGCTGGGGCCTGCAGCGCG‑TACCCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGt < 2:2378377/150‑1 (MQ=255) ccGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGt > 1:6690393/1‑150 (MQ=39) cGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAgg < 2:3240514/90‑1 (MQ=38) cGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAgg > 1:3240514/1‑90 (MQ=38) cGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTg > 2:627303/1‑150 (MQ=39) gcgcTGCAGGCCCCATCCATGGGGCCT‑CAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACccgc > 2:5776215/1‑150 (MQ=14) gcgcTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACccgc > 1:2932573/1‑150 (MQ=39) gcTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACccgccg > 2:5228229/1‑150 (MQ=39) gcTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACccgccg > 2:594761/1‑150 (MQ=39) tgcaGGCCCCATCCATGGGGCCT‑CAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTa > 2:928485/4‑150 (MQ=255) g‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTaa > 1:5410224/1‑150 (MQ=39) ggCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAgg < 2:5409144/150‑1 (MQ=39) ggCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAgg > 1:6732962/1‑150 (MQ=39) gCCCCATGGAGGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAggg < 2:6055953/150‑1 (MQ=255) cccATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGcc > 1:3153869/1‑150 (MQ=40) ccATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCa > 1:5326509/1‑150 (MQ=40) ccATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCa > 2:3928333/1‑150 (MQ=40) ccATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCa > 2:370733/1‑150 (MQ=40) ccATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCa > 2:6440249/1‑150 (MQ=40) ccATGGATGGGGCCTGCAGCGCG‑TACTACCGGGAGCAAGCCCGGAGCGAGGGAACCACGGAGCGTAGCGCAGGGGCCGTATGAAAGGAGCGAATCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCa > 2:2976303/1‑150 (MQ=14) atggatggGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATc > 1:2169582/1‑150 (MQ=255) tccgggCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCtt > 2:1396083/4‑150 (MQ=255) atggGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCtt < 2:5800705/150‑1 (MQ=255) ggggCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTc > 1:8166194/1‑150 (MQ=255) ggggCCTGAAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCAGTAAGGGCCATCCCTTTc > 1:5965257/1‑150 (MQ=255) ggCCCGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCaa < 2:417998/150‑1 (MQ=255) gcccTCCAGCGCG‑TACGCCCGGGCGCACGCCCGGCGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCaa < 1:828168/148‑1 (MQ=14) gCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAg > 2:5438024/1‑150 (MQ=255) ccTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAgg > 2:2646911/1‑150 (MQ=255) cAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCtt < 2:5131141/150‑1 (MQ=255) gcgcG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTc > 1:889049/1‑149 (MQ=255) gcgcG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCg > 1:7559079/1‑150 (MQ=255) gcgcG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCg < 2:8937490/150‑1 (MQ=255) g‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAg > 1:7607556/1‑150 (MQ=255) | TCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCATGGATGGGGCCTGCAGCGCG‑TACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAA > NC_002947/2414740‑2415038 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |