| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,670,035 | T→C | 11.8% | intergenic (+88/‑79) | prpF → / → prpD | aconitate isomerase/2‑methylcitrate dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,670,035 | 0 | T | C | 11.8% | 403.1 / 32.7 | 147 | intergenic (+88/‑79) | prpF/prpD | aconitate isomerase/2‑methylcitrate dehydratase |
| Reads supporting (aligned to +/- strand): ref base T (52/75); new base C (6/11); total (59/88) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.94e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.82e-01 | |||||||||||
Only 100 of 147 total aligned reads displayed.
AGCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGCCGA > NC_002947/2669888‑2670178 | aGCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCTCTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGc < 1:6894515/150‑1 (MQ=255) gCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCt < 2:7854433/150‑1 (MQ=255) gCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCt < 1:7774743/150‑1 (MQ=255) ccGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCtg < 1:8812577/150‑1 (MQ=255) ccGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCtg < 1:6613259/150‑1 (MQ=255) cGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACTACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCtgt < 1:8475594/150‑1 (MQ=255) cGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCtgt < 1:4609112/150‑1 (MQ=255) cGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCtgt < 2:6992314/150‑1 (MQ=255) cGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCtgt < 2:8490370/150‑1 (MQ=255) cGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCtgt < 1:4160724/150‑1 (MQ=255) gTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCtgtg < 1:735895/150‑1 (MQ=255) gTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCtgtg < 1:5308489/150‑1 (MQ=255) gTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCtgtg < 1:5623093/150‑1 (MQ=255) gTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCtgtg < 1:1150761/150‑1 (MQ=255) aGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGat < 1:4365499/150‑1 (MQ=255) aGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGat < 1:1575272/150‑1 (MQ=255) cTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATcc < 2:107173/150‑1 (MQ=255) cgcgTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCt < 2:5767420/150‑1 (MQ=255) cgcgTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCt < 2:1684430/150‑1 (MQ=255) cgcgTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCt < 2:1684286/150‑1 (MQ=255) cgcgTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCt < 2:874999/150‑1 (MQ=255) gcgTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCtg < 2:4752530/150‑1 (MQ=255) cgTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCtgt < 1:3842530/150‑1 (MQ=255) cgTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCtgt < 1:3445542/150‑1 (MQ=255) cgTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCtgt < 1:3320515/150‑1 (MQ=255) gTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCtgtg < 1:8719157/150‑1 (MQ=255) gCTGATGGAGGGCTGGGGTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGGA‑ATCACAGGGTTT‑GAATGCTGGGATATACCTGgggg > 1:2973270/1‑150 (MQ=39) cTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGGATATCACAGCATTC‑AAACCCTGTGAT‑TACCTGTGGGa < 2:1207112/150‑1 (MQ=18) cTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGGATATCACAGCATTC‑AAACCCTGTGAT‑TACCTGTGGGa < 2:4304420/150‑1 (MQ=18) cTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGGATATCACAGCATTC‑AAACCCTGTGAT‑TACCTGTGGGa < 2:5222915/150‑1 (MQ=18) cTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGGATATCACAGCATTC‑AAACCCTGTGAT‑TACCTGTGGGa < 2:1468318/150‑1 (MQ=18) gATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCACGAGGGGCCGCTTTGCGGCCCATCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGc < 2:3839522/150‑1 (MQ=255) gATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCCCCGGGA‑AACACACGGGTT‑GAAAGCAGAGATATACCAGTGGGAGc > 1:5138150/1‑150 (MQ=255) gATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGc < 2:8342836/150‑1 (MQ=255) gATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCAAAAGCACCACTCGCGCTCGGCTTCAAGAGGGGCCGCTTTGCAGCCCTTCGCGGGCTTGCCCGCTCCCACAGGGATATCACAGCATTC‑AAACCCTGTGAT‑TACCTGTGGGAGc < 2:4619858/150‑1 (MQ=17) tGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCgg < 1:8142900/150‑1 (MQ=255) tGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGGATATCACAGCATTC‑AAACCCTGTGAT‑TACCTGTGGGAGCgg < 2:5298316/150‑1 (MQ=18) ggAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCggg < 2:907383/150‑1 (MQ=255) gAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCCCAGGGATATCACAGCATTC‑AAACCCTGTGAT‑TACCTGTGGGAGCGGGc < 2:6814019/150‑1 (MQ=18) gggCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCaa < 2:2578738/150‑1 (MQ=255) gggCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCaa < 2:2913745/150‑1 (MQ=255) ggCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAg < 1:4693896/150‑1 (MQ=255) ggCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCGCCCCCACGTA‑AACACACGGTTTGGAATG‑TGGGTTATCACGGGGGGAGCGGGCacg > 1:7034878/1‑148 (MQ=255) tGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGGTATCCCTGTGGGAGCGGGCAAGccc > 2:1273294/1‑150 (MQ=255) tGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGccc < 2:4287624/150‑1 (MQ=255) tGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGcac > 2:5919184/1‑150 (MQ=255) ggCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACCGGGTTT‑GAATGCTGTTATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGcaca < 2:3749592/150‑1 (MQ=255) gctAGCTTCTACAGCACAAGTGGCGCTCGGCTTCCAGAGGGGCCGCTTTGCTCCCATTGGCGGGATTCACCGCTCCGACAGTTA‑ACCCATGTGTTT‑GATTGCTGTTATATACCTGGGGTAGCGGTCATGCCCGCGAAGGGCTGCAcagca < 2:7406123/148‑1 (MQ=255) tCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCgg > 2:4814877/1‑150 (MQ=255) gccgaGCGCCAGTGGTGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCACCCACAGGTA‑ATAACAGGGTTT‑GAATTCTGTGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGc > 2:190250/5‑150 (MQ=37) caaaaGCACCACTGGCGCTCGGCTACAAGAGGGGCCGCTTGGCGGCCCTTCGGGGGCTTGCCCGCTCCCACAGTTA‑ACCACAGGTTTT‑GAATGCTGGGATAACCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGc < 2:5500684/148‑1 (MQ=37) aaGCACCACGGGCGCTCGGCTTCAAGTGGGGCCGCTTGGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACCGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCTAGCCCGCGAAGGGCTGCTGTGCAGcccttcgcgg < 2:7858636/150‑8 (MQ=37) aGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACCGGGTTT‑GAATGCGGTGATATCCCGGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCaaat > 2:1540986/1‑148 (MQ=255) ccacTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTGGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGa < 2:8921123/150‑1 (MQ=255) cccgggggcTGGGCTTCACGCGGGGCCGGTTTGGGGCCCTGGGGGGGCTTGCCCGCGCCCACGGTTA‑AGCCCTGGGTTT‑GTTTGCTGTTTTTTCCCTGTGGGCGGGGGAACGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGaa < 2:2566853/143‑1 (MQ=255) cacTGGCGCTCGGATTCATGCGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCACCCACCGTTA‑ATCACAGGTTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGaa < 2:2567575/150‑1 (MQ=37) tGGCTCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAggg < 2:5143410/150‑1 (MQ=255) tgggCTTCATGTGGGGCGGCTTTGCGGCCCTTGGCGGGGTTGCCGGCTCCCACTGGTA‑ATCACTGGTTTT‑GAATGCTGTGATTGCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTgg < 1:9024983/148‑1 (MQ=25) tCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTgg < 2:7588144/150‑1 (MQ=255) tCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTgg < 2:7340876/150‑1 (MQ=255) tttagagGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCCATTCTGAAGGGAGCTGGATATGa > 2:3641757/4‑150 (MQ=255) atgcggggCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCCCCCACAGTAA‑ATAACCGGTTTT‑GATTGCTGTCATATCCCGGGGGGCGGGGGCACGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAgc < 1:4466228/146‑1 (MQ=255) agagGGGCCGCTTTGCGGCCCTTCGCGGGCTTTCCCCCACCCACAGGTA‑ATAACAGGGTTT‑GGATGCTGTGATAAACCTGTGGGAGCGGGCCAGCCCGCGAAGGGCTGCACCGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGGgcg > 2:3185917/1‑150 (MQ=37) ggggCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGTTTT‑GATTGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCa < 2:562817/150‑1 (MQ=255) gCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑AACACAGGGTTT‑GAATGCTGTGATATCCCGGTGGGAGCGGGCAAGCCCGCGAAGGGCGGCACCGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACg > 2:4917513/1‑150 (MQ=255) cGCTTTGCGGCCCTTCGCGGGCTTTCCCGCACCCAAAGGGA‑ATAACCGGGTTT‑TCATGCGGTGATAAACCTGGGGGTGCCGGCAAACCCGCGAACGGCCGCAAAGAAGCCACCGCCAATGTGTAGGGAGCTGGATATGCTCGcccaactg > 2:4058435/1‑144 (MQ=255) gCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACCGGTA‑ATCACAGGGTTT‑GAATGCGGGGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCGGCCCAGCCGCCCCGGCACTTCTGAAGGGAGCTGGATATGTGCGCCAACGTAg > 2:6716790/1‑150 (MQ=37) gCTTTGCGGCCCTTCGCGGGCGTGCCCGCTCCCACAGGTA‑AACACAGGGTTT‑GAATGCTGTGATATACCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAAATCTGAAGGGAGCTGGATATGAGCGCCAACGTAg > 2:6406397/1‑150 (MQ=255) ttCGCGGGCTTGCCCCCACCCCCAGGTA‑ATCACAGGGTTT‑GCATTGTGTGATATACCTGTGGGGGCGGGCAAGCCCGCCGATGGCTGCAAAGCCGCCCCGGCAAATCTGCAGGGAGCTGGATATGAGCGCCAACGGAGACCTCAACGATc > 2:1946305/1‑150 (MQ=255) cgGGCTGGCCCGCTCCCCCCGGTA‑CGCCCAGGGTTT‑GCATGCTGTGATATCCCTGGGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGccc < 1:4475976/150‑1 (MQ=255) gggCTTGCCCGCTCCCACAGGGATATCACAGCATTC‑AAACCCTGTGAT‑TACCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCg > 1:2800268/1‑150 (MQ=17) gggCTTGCCCGCTCCCACAGGGATATCACAGCATTC‑AAACCCTGTGAT‑TACCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCACAACGATCGCCCg > 1:7333969/1‑150 (MQ=17) gCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGa > 1:817257/1‑150 (MQ=255) gCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGa > 2:6834373/1‑150 (MQ=255) tGCCCGCTCCCACAGGTA‑ACCACCGGGTTT‑GAATGCTGTGATATCCCTGGGGGCGGGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTa < 1:2210728/150‑1 (MQ=255) ccGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGcccc < 2:4525817/86‑1 (MQ=255) cagCTCCCACAGGGATATCACAGCATTC‑AAACCCTGTGAT‑TAACTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCACCGGCAATTCTGAAGGGAGCTGGATATGAGCGACAACGAAGACCTCAACGATCGCACGGATTACGa > 2:2740586/3‑150 (MQ=17) gCTCCCACAGGGATATCACAGCATTC‑AAACCCTGTGAT‑TACCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGAcc > 1:1294990/1‑150 (MQ=18) tCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTATGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCgg > 1:3083138/1‑150 (MQ=255) ccACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGt > 2:3015507/1‑150 (MQ=255) ccACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGt > 2:6670781/1‑150 (MQ=255) acaGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGccc > 1:2697831/1‑133 (MQ=255) acaGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGccc < 2:2697831/133‑1 (MQ=255) acaGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGc > 2:6427687/1‑150 (MQ=255) cggTA‑CTCACAGGGTTT‑GAAGGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTa < 2:8903177/149‑1 (MQ=255) cactGGGTTT‑GAATGCTGTGATTTCCCTGTGGGCGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAAccc < 2:831733/150‑1 (MQ=255) cacaGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAAccc > 1:2364869/1‑150 (MQ=255) acaGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCt > 2:4551455/1‑150 (MQ=255) cggggTTT‑TAATGCGGTCATCTCCCGGTGGGCGCGGCCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTg < 1:8855358/148‑1 (MQ=255) ccgggTTT‑TAATGCTGTGATATCCCTGGGGGTGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTg < 2:1206670/148‑1 (MQ=255) caGGGTTT‑GAATGCTGTGATATCCCTGTGTGATCGGGCAAGCCCGCGAAGGGCTGCACATCAGACACGGCAAATATGAAGTGAGCTGGATATGAGCGCCAACGTAGACATCAACGAACGCCCGGATTACTAACGGGTGCTACAAACCCTg > 1:1286945/1‑150 (MQ=255) caGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTg > 2:7914685/1‑150 (MQ=255) caGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTg < 2:5795093/150‑1 (MQ=255) aGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGGGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTgg > 1:7107797/1‑150 (MQ=255) aGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTgg > 1:7174036/1‑150 (MQ=255) aGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTgg > 1:1795618/1‑150 (MQ=255) ttt‑GATTGCTGTTATATCCCTGTGGTAGGGTGCATTCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATTTGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTTGCCGa < 2:6224383/150‑1 (MQ=255) ttt‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGctcg > 2:9072239/1‑147 (MQ=255) ttt‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGCCGa < 2:3191391/150‑1 (MQ=255) ttt‑GAATGCTGGGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGCCgt > 1:9135770/1‑149 (MQ=255) | AGCCGTAGTGCTCGCGTGCTGATGGAGGGCTGGGTTCGCGTGCCTGGCGATAGCTTCTAAAGCACCACTGGCGCTCGGCTTCAAGAGGGGCCGCTTTGCGGCCCTTCGCGGGCTTGCCCGCTCCCACAGGTA‑ATCACAGGGTTT‑GAATGCTGTGATATCCCTGTGGGAGCGGGCAAGCCCGCGAAGGGCTGCACAGCAGCCCCGGCAATTCTGAAGGGAGCTGGATATGAGCGCCAACGTAGACCTCAACGATCGCCCGGATTACGACCGGGTGCTACAAACCCTGGCCGA > NC_002947/2669888‑2670178 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |