BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	2,810,512	A→G	6.9%	noncoding (413/434 nt)	PP_mr35 ←	cspA regulatory region

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	2,810,512	0	A	G	6.9%	692.8 / 27.3	230	noncoding (413/434 nt)	PP_mr35	cspA regulatory region
Reads supporting (aligned to +/- strand): ref base A (100/114); new base G (8/8); total (108/122)
Fisher's exact test for biased strand distribution p-value = 8.02e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.15e-01

Only 100 of 234 total aligned reads displayed.

CGCAAAATGTGAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGCTTTGAAGTGTA  >  NC_002947/2810363‑2810658

cgcAAAATGTGAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACTCGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACaa                                                                                                                                                    <  2:4684632/150‑1 (MQ=255)

cgcAAAATGTGAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACaa                                                                                                                                                    >  2:1714171/1‑150 (MQ=255)

  cAAAATGTGAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAgg                                                                                                                                                  <  2:703140/150‑1 (MQ=255)

   aaaaTGTGAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAggg                                                                                                                                                 >  2:5798704/1‑150 (MQ=255)

    aaaTGTGAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGc                                                                                                                                                <  2:8103305/150‑1 (MQ=255)

       tgtgAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCggg                                                                                                                                             <  2:6008137/150‑1 (MQ=255)

         tgAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAACGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCACTCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCCCAAGGGCGGGtt                                                                                                                                           >  2:6487128/1‑150 (MQ=255)

           aaaaGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCCTTGTGGCGGGtttt                                                                                                                                         >  2:2366936/1‑150 (MQ=39)

           aaaaGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAAACCGCCACAAGGGCGGGtttt                                                                                                                                         >  1:5632943/1‑150 (MQ=255)

           aaaaGACTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGtttt                                                                                                                                         >  2:6290619/1‑150 (MQ=255)

            aaaGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCCTTGTGGCGGGttttt                                                                                                                                        <  2:3915594/150‑1 (MQ=39)

            aaaGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGttttt                                                                                                                                        <  1:4612709/150‑1 (MQ=255)

            aaaGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGttttt                                                                                                                                        <  2:1960129/150‑1 (MQ=255)

            aaaGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGttttt                                                                                                                                        <  2:693400/150‑1 (MQ=255)

            aaaGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGttttt                                                                                                                                        <  2:7662745/150‑1 (MQ=255)

            aaaGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGttttt                                                                                                                                        <  2:5553383/150‑1 (MQ=255)

            aaaGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGttttt                                                                                                                                        <  1:4002522/150‑1 (MQ=255)

             aaGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCCTTGTGGCGGGtttttt                                                                                                                                       <  1:932701/150‑1 (MQ=39)

             aaGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGtttttt                                                                                                                                       <  1:2886013/150‑1 (MQ=255)

             aaGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGtttttt                                                                                                                                       <  2:3103989/150‑1 (MQ=255)

               gCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTa                                                                                                                                     >  2:9122298/1‑150 (MQ=255)

                 cTGCGCGGTGGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACa                                                                                                                                   <  1:1853876/150‑1 (MQ=255)

                 cTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACa                                                                                                                                   <  1:5761263/150‑1 (MQ=255)

                  tGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAg                                                                                                                                  >  1:5971853/1‑150 (MQ=255)

                  tGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAg                                                                                                                                  >  2:1470696/1‑150 (MQ=255)

                       ggTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCACTCCCGCCCCTTCAGATGTTGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATc                                                                                                                             >  1:2641552/1‑150 (MQ=255)

                           gCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGaa                                                                                                                         >  2:1073828/1‑150 (MQ=255)

                            ccTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAAt                                                                                                                        <  2:4969573/150‑1 (MQ=255)

                                gTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACt                                                                                                                    <  1:5993303/150‑1 (MQ=255)

                                        gggTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGa                                                                                                            <  1:5431417/150‑1 (MQ=255)

                                        gggTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGa                                                                                                            <  1:6489807/150‑1 (MQ=255)

                                         ggTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGaa                                                                                                           <  2:331373/150‑1 (MQ=255)

                                            tCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCt                                                                                                        <  2:3835119/150‑1 (MQ=255)

                                              aCCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCtgt                                                                                                      <  2:6559564/150‑1 (MQ=255)

                                                ccGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATTCATCACCCAA‑AAAAAAAACCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGc                                                                                                    >  2:2018895/1‑150 (MQ=255)

                                                ccGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACACGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGc                                                                                                    >  2:5603620/1‑150 (MQ=255)

                                                    tggcacGGGCTTTGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTTCAGCTATCCGAATTACTCCGGACGAAc                                                                                                          >  1:6604462/4‑140 (MQ=255)

                                                    tggcacGGGCTTTGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAAc                                                                                                          <  2:6604462/137‑1 (MQ=255)

                                                    tggcacGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGcc                                                                                                >  2:8251125/4‑150 (MQ=255)

                                                    gAACACGGGCAAAGCCCGTGCCAGTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCCT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGcc                                                                                                <  2:1013590/150‑1 (MQ=255)

                                                      acacGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAATCCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTg                                                                                              >  1:3744922/1‑150 (MQ=255)

                                                        acGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCCGATGATGCATCACCCAT‑AAAAAAACCCGCCCCAAGGGCGGGTTTTTTTACAGCTCTCCGAATTACTCCGGACGAACCTGTGCAGCCTGCa                                                                                            >  1:7866200/1‑150 (MQ=255)

                                                         cGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCAt                                                                                           <  2:6090428/150‑1 (MQ=255)

                                                          gggCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCgg                                                                                                                                              >  1:635044/1‑98 (MQ=255)

                                                          gggCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCgg                                                                                                                                              <  2:635044/98‑1 (MQ=255)

                                                          gggCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATg                                                                                          <  2:2259121/150‑1 (MQ=255)

                                                            gCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGcc                                                                                        >  2:7588216/1‑150 (MQ=255)

                                                             cAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCCTCACCCAT‑AAAAAAACCCGCCCCAAGGGCGGGTTTTTTTACAGCTATCCGACTTACTCCGGACGAACCTGTGCAGCCTGCATGccc                                                                                       >  2:5432012/1‑150 (MQ=255)

                                                              aaaGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGcccg                                                                                      >  1:3267264/1‑149 (MQ=255)

                                                                              aCCCGACAGTCGGAGTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAA‑AACAAAACCCGCCCCCAGGGCGGGTTTTTTTACAGCAATCCGAATTACTCCGGACGACCCCGTGCAGCCTGCCTGCCCTTCTGGCCGCGCTCGGc                                                                      <  1:3019538/150‑1 (MQ=255)

                                                                                  tACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGcga                                                                    <  1:3891714/148‑1 (MQ=255)

                                                                                  tACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCAACCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCAGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGcgacg                                                                  >  2:4524934/1‑150 (MQ=255)

                                                                                    cAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGaa                                                                <  1:8918452/150‑1 (MQ=255)

                                                                                     aGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCAGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAg                                                               >  2:3021804/1‑150 (MQ=255)

                                                                                       tCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGa                                                             >  1:3280074/1‑150 (MQ=255)

                                                                                         ggTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAACAAACCCGCCACAAGGGCGGGTTTTTTTACAGCGATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGaaa                                                           <  1:8334970/150‑1 (MQ=255)

                                                                                          gTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCATAAAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGaaa                                                           <  1:2788183/150‑1 (MQ=255)

                                                                                               gCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACCGTCt                                                     >  1:6485432/1‑150 (MQ=255)

                                                                                               gCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCt                                                     >  2:3469128/1‑150 (MQ=255)

                                                                                               gCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCt                                                     >  1:1038673/1‑150 (MQ=255)

                                                                                               gCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCt                                                     >  2:6758936/1‑150 (MQ=255)

                                                                                               gCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCGGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCt                                                     >  1:4475468/1‑150 (MQ=255)

                                                                                                cAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCAGAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTg                                                    <  2:1391307/150‑1 (MQ=255)

                                                                                                cAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTg                                                    <  2:2944586/150‑1 (MQ=255)

                                                                                                cAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTg                                                    >  1:1927956/1‑150 (MQ=255)

                                                                                                 aGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTgg                                                   <  2:4758361/150‑1 (MQ=255)

                                                                                                  ggCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGc                                                  <  1:8381477/150‑1 (MQ=255)

                                                                                                    cAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACCGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCct                                                <  2:1264106/150‑1 (MQ=255)

                                                                                                     aaTCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCctt                                               <  1:5164025/150‑1 (MQ=255)

                                                                                                     aaTCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAAGTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGACACAGTCTGGCctt                                               >  2:7293942/1‑150 (MQ=255)

                                                                                                        cccGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCcttctt                                            >  1:2101160/1‑150 (MQ=255)

                                                                                                           gCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCa                                         >  1:2244062/1‑150 (MQ=255)

                                                                                                           gCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCa                                         <  1:6119738/150‑1 (MQ=255)

                                                                                                           gCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCa                                         <  1:2047640/150‑1 (MQ=255)

                                                                                                           gCCCCGTCAGATGATGCATCACCCAC‑ACCACACCCCGCCCCAAGGGCGGGTTTTTTTACAGCTCTCCGAATTACGCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCa                                         <  1:8494332/150‑1 (MQ=255)

                                                                                                            ccccTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAg                                        <  1:1711208/150‑1 (MQ=255)

                                                                                                            ccccTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTATTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAg                                        <  1:2509837/150‑1 (MQ=255)

                                                                                                            ccccTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTCTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAg                                        <  1:8512920/150‑1 (MQ=255)

                                                                                                                ttCAGATGATGCATCACCCAT‑AGAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGctc                                    <  2:4606345/150‑1 (MQ=255)

                                                                                                                     atgatgCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGaa                               <  1:5498176/150‑1 (MQ=255)

                                                                                                                            aTCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCa                        <  2:1498675/150‑1 (MQ=255)

                                                                                                                                 ccAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTc                   <  1:3509216/150‑1 (MQ=255)

                                                                                                                                   aT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGa                 >  1:5109579/1‑150 (MQ=255)

                                                                                                                                       aaaaaaCCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATgg              >  1:4179089/1‑150 (MQ=255)

                                                                                                                                        aaaaaCCCGCCCTTGTGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGcc                                                                               >  1:6323625/1‑84 (MQ=37)

                                                                                                                                        aaaaaCCCGCCCTTGTGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGc             >  1:1405536/1‑150 (MQ=39)

                                                                                                                                        aaaaaCCCGCCCTTGTGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTCTCAGGCTCTTGAAGCCGTCAGATTCGATGGc             >  2:2790461/1‑150 (MQ=255)

                                                                                                                                        aaaaaCCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGc             >  1:5534055/1‑150 (MQ=255)

                                                                                                                                         aaaaCCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCcttc                                              >  1:2559640/1‑116 (MQ=255)

                                                                                                                                         aaaaCCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCcttc                                              <  2:2559640/116‑1 (MQ=255)

                                                                                                                                         aaaaCCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGCt            <  1:2867782/150‑1 (MQ=255)

                                                                                                                                         aaaaCCCGCCACAAGGGCGGGTTGTTTTACAGCTATACGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGTTGGCt            >  2:2210773/1‑150 (MQ=255)

                                                                                                                                          aatcccGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGCtt           >  2:3779371/4‑150 (MQ=255)

                                                                                                                                          aaaCCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGCtt           <  2:6865836/150‑1 (MQ=255)

                                                                                                                                          aaaCCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGCtt           <  2:8123590/150‑1 (MQ=255)

                                                                                                                                          aaaCCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGCtt           >  1:4103516/1‑150 (MQ=255)

                                                                                                                                              ccGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGCTTTGaa       <  1:8000155/150‑1 (MQ=255)

                                                                                                                                                   acaAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCTGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGCTTTGAAGTGTa  >  2:8737281/1‑150 (MQ=255)

                                                                                                                                                   acaAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGCTTTGAAGTGTa  <  1:3656921/150‑1 (MQ=255)

                                                                                                                                                   acaAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGCTTTGAAGTGTa  <  1:1470696/150‑1 (MQ=255)

CGCAAAATGTGAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACCCAT‑AAAAAAACCCGCCACAAGGGCGGGTTTTTTTACAGCTATCCGAATTACTCCGGACGAACCTGTGCAGCCTGCATGCCCTTCTGGCCGCGCTCGGCGACGAAGGAAACAGTCTGGCCTTCTTTCAGGCTCTTGAAGCCGTCAGATTCGATGGCTTTGAAGTGTA  >  NC_002947/2810363‑2810658

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`