BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	2,892,404	T→A	5.9%	P57P (CCA→CCT) ‡	PP_2544 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	2,892,404	0	T	A	5.9%	737.3 / 23.7	229	P57P (CCA→CCT) ‡	PP_2544	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (104/108); new base A (3/11); total (107/122)
Fisher's exact test for biased strand distribution p-value = 5.46e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01

Only 100 of 233 total aligned reads displayed.

CCATGGCCTTCATGCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAGGTCTTCACGGGCGTGCGCA  >  NC_002947/2892255‑2892552

ccATGGCCTTCATGCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCtt                                                                                                                                                        <  2:1909879/150‑1 (MQ=255)

  aTGGCCTTCATGCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTgg                                                                                                                                                      >  1:4822049/1‑150 (MQ=255)

  aTGGCCTTCATGCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTgg                                                                                                                                                      <  2:7295876/150‑1 (MQ=255)

   tGGCCTTCATGCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTggg                                                                                                                                                     <  1:2541925/150‑1 (MQ=255)

      ccTTCATGCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGAc                                                                                                                                                  <  2:4269800/150‑1 (MQ=255)

       cTTCATGCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGAcc                                                                                                                                                 >  2:5153780/1‑150 (MQ=255)

         tCATGCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGAccc                                                                                                                                                <  1:3284850/149‑1 (MQ=255)

         tCATGCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCg                                                                                                                                               <  1:2620566/150‑1 (MQ=255)

          cATGCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCgg                                                                                                                                              <  2:8135904/150‑1 (MQ=255)

          cATGCCTGACTACCAGATCCTGGTAATTTCCACCGGTATCGCTGCGGGGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCgg                                                                                                                                              <  1:3796826/150‑1 (MQ=255)

           aTGCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGc                                                                                                                                             >  2:5333615/1‑150 (MQ=255)

           aTGCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCGTGGGGACCCGGc                                                                                                                                             >  1:1915502/1‑150 (MQ=255)

           aTGCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGG‑TCCCCAAGGGAGCCGGcc                                                                                                                                            <  1:1515588/150‑1 (MQ=255)

            tGCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGGTCCCCAAGGGAGCCGGcc                                                                                                                                            <  1:748308/150‑1 (MQ=255)

            tGCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGcc                                                                                                                                            <  1:914723/150‑1 (MQ=255)

             gCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCg                                                                                                                                           >  1:2996608/1‑150 (MQ=255)

              ccTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGGTCCCCAAGGGAGCCGGCCGt                                                                                                                                          <  1:3644377/150‑1 (MQ=255)

              ccTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGt                                                                                                                                          >  2:8327846/1‑150 (MQ=255)

               cTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGtt                                                                                                                                         >  1:8915205/1‑150 (MQ=255)

                tGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGttt                                                                                                                                        >  1:7862238/1‑150 (MQ=255)

                tGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGttt                                                                                                                                        >  1:5729952/1‑150 (MQ=255)

                tGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCGTGGGGACCCGGCCGttt                                                                                                                                        >  1:4899689/1‑150 (MQ=255)

                 gACTACCAGATCCTGGTCTTTTCCACGGGTATCGCTGGGGGGGTCGTGGGGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTACGGGTCACTCGCATCTGGAAACGGCCGGGTCCCCAAGGGAGCCGGCCGTTTc                                                                                                                                       <  2:2920377/150‑1 (MQ=255)

                 gACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGGGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCTGCACTAAGCGTCACTCGCCTCTGTAAACGGCCGGGTCCCCAAGGGAGCCGGCCGTTTc                                                                                                                                       <  2:7371004/150‑1 (MQ=255)

                 gACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTc                                                                                                                                       <  2:1268223/150‑1 (MQ=255)

                    tACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCCGCACCCTTGGGGACCCGGCCGTGTggc‑g                                                                                                                                   >  1:816693/1‑150 (MQ=255)

                      ccAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGAccc                                                                                                                                                <  1:5307631/136‑1 (MQ=255)

                      ccAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑gtt                                                                                                                                 >  2:6740117/1‑150 (MQ=255)

                       cAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCATGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑gttg                                                                                                                                >  2:777190/1‑150 (MQ=255)

                          aTCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑Gttgttg                                                                                                                             <  1:4079674/150‑1 (MQ=255)

                           tCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTgg                                                                                                                            <  2:8732878/150‑1 (MQ=255)

                             cTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGc                                                                                                                          >  2:2209255/1‑150 (MQ=255)

                              tGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCACCCATGGGGACCCGGCCGTTTAGC‑GTTGTTGGGcc                                                                                                                         >  1:6760073/1‑150 (MQ=255)

                               ggTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTGGG‑GTTGTTGGGCCt                                                                                                                        >  2:3156878/1‑150 (MQ=255)

                                 tCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGGTGGGCCTgg                                                                                                                      >  1:6684988/1‑150 (MQ=255)

                                 tCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GGTGTTGGGCCTgg                                                                                                                      >  2:1101065/1‑150 (MQ=255)

                                      tCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCttt                                                                                                                 <  2:5664570/150‑1 (MQ=255)

                                       ccACCGGTATCGCTGCTGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACACGCCTCTGGAAACGGCCCGCACCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCtttt                                                                                                                >  2:6227122/1‑150 (MQ=255)

                                       ccACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCtttt                                                                                                                >  2:6048366/1‑150 (MQ=255)

                                       ccACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCGTGGGGACCCGGCCGTTTCGC‑GGTGTTGGGGCGGGGCtttt                                                                                                                >  1:5003712/1‑150 (MQ=255)

                                        tcggggTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGGTTCGC‑CGTGGTGGGCCTGGGCttttt                                                                                                               >  2:5720719/5‑150 (MQ=255)

                                          ccGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCt                                                                                                             <  2:6760073/150‑1 (MQ=255)

                                               agcGCTGCGGCGGTCGTGGGGGCGCGGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTGTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCggg                                                                                                        <  1:3178747/148‑1 (MQ=255)

                                                  gCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTGGC‑GGTGTTGGGCCTGGGCGTTTTGTGCGGGccg                                                                                                     >  2:3016497/1‑148 (MQ=255)

                                                  gCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCAt                                                                                                     >  2:3310886/1‑150 (MQ=255)

                                                    tGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTggg                                                                                                                                                     <  1:1690520/101‑1 (MQ=255)

                                                    tGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCAtgt                                                                                                   <  2:1675949/150‑1 (MQ=255)

                                                    tGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCAtgt                                                                                                   <  1:369022/150‑1 (MQ=255)

                                                      cggcggTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCATTTTCTGCGGGCATGTgg                                                                                                 <  2:8524614/150‑1 (MQ=255)

                                                          ggTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTAGC‑GTTGTTTGGGCGGGGGTTTTTATGAGGGCATGTTGAAAc                                                                                             >  1:7005449/1‑150 (MQ=255)

                                                                ggtggCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTTTTTGGCCTGGGGTTTTTATTCGGGCATGTGGAAACCCAGGt                                                                                       >  1:6348200/1‑150 (MQ=255)

                                                                     cGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATc                                                                                  <  1:1035729/150‑1 (MQ=255)

                                                                           gtgtGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGt                                                                           <  2:3736416/150‑1 (MQ=255)

                                                                               ggtgCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAAc                                                                       <  1:3975627/150‑1 (MQ=255)

                                                                                gtgCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GGTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAAcc                                                                      >  2:6979044/1‑150 (MQ=255)

                                                                                 tgCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCg                                                                     <  1:5821313/150‑1 (MQ=255)

                                                                                   cACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCCGCTAACAAGGGGACCCGGCCGTTTGGCGGTGGTTGGGCGTGGGTGTTTATTGGGGGC‑CGTGGAAAAGCTTGTTGAACCACCGGTGaccacg                                                                    >  1:7663018/1‑145 (MQ=255)

                                                                                     ccAGATCAGCTCTGGTAGCAAGCAGCACTAAGCGACACTCGCCTCTGGAAACGGCCGGCACCCGTGGGGACCCGGCCGTTTCGC‑CTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCAGGGTCATCCA‑CGGGGTACCGATCa                                                                 >  2:5147013/1‑150 (MQ=255)

                                                                                          tCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCt                                                            <  1:8753125/150‑1 (MQ=255)

                                                                                            cGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCGGGGCTTTTTATGCGGGCATGTGGAAACGCTGGTTCATCCA‑ACGTGAACCGAGCCGGGCTGc                                                          >  1:2149135/1‑150 (MQ=255)

                                                                                             gCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCCTGTGGAAACGCTGGTTCATACA‑CGGTGAACCGAGCAGGGCTGcc                                                         >  2:469152/1‑150 (MQ=255)

                                                                                               tctGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTGGC‑GGTTTTTGGGCGGGGCTTTTTATGCGGGCCTGTGGAAACGCAGGTTAAAACA‑CCGTGAAACCACCAGGGCTGCCGc                                                       >  1:6235270/1‑150 (MQ=255)

                                                                                                  ggTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCATGGGGACCCGGCCGTGTGGG‑CTTGTTGGGCCGGGGGGTTTTGTTCGGGGAGGTGGGAAACCTGGTTAATCCA‑CCCTGAACCCAGCCCGGCGGCCGCAGc                                                    >  1:7916089/1‑150 (MQ=255)

                                                                                                     agcaagcaGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGAt                                                 <  2:4847709/150‑1 (MQ=255)

                                                                                                       caagcaGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCa                                               <  1:6278857/150‑1 (MQ=255)

                                                                                                        aagcaGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCCTGGGGAAACGCTGGTTCATCCA‑CGGTGAACCGCGCCGGGCTGCCGCcgcgcgcag                                              >  2:5446598/1‑145 (MQ=255)

                                                                                                        aagcaGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAg                                              <  2:359264/150‑1 (MQ=255)

                                                                                                         agcagcACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAgg                                             <  2:4486261/150‑1 (MQ=255)

                                                                                                           cagcaCTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGc                                           <  1:8996261/150‑1 (MQ=255)

                                                                                                            agcaCTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGcc                                          <  2:5635282/150‑1 (MQ=255)

                                                                                                             gcaCTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCa                                         <  1:6034321/150‑1 (MQ=255)

                                                                                                              caCTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGCCCCGGCCGGTTCGC‑GGTGTTTGGGCGGGGCGTTTTGTGCGGGGAGGTGGTAACGCTGGGTAATCCA‑CGGGGTAACCAGCCGGGCGGCCGCAGCGATCAGGGcccg                                        >  1:7265854/1‑148 (MQ=255)

                                                                                                                cTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGa                                      <  1:4225721/150‑1 (MQ=255)

                                                                                                                  aaGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATg                                    <  1:532913/150‑1 (MQ=255)

                                                                                                                  aaGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATg                                    <  1:9118957/150‑1 (MQ=255)

                                                                                                                   aGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCGTGGGGACCCGGCCGGGTCGC‑GGTGTTGGGCCTGGGCGTGTTCGGGGGGGCAGTGGTAAAGCTGGTTGATACC‑CGGGGCACCGGGCCGGGCTGCCGCCGCGCTCAGGGGCACGATgg                                   >  2:1565151/1‑150 (MQ=255)

                                                                                                                    gCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGc                                  <  2:5238648/150‑1 (MQ=255)

                                                                                                                    gCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCAA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGc                                  <  2:3359617/150‑1 (MQ=255)

                                                                                                                      gTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCCGGGCTGCCGCAGCGATCAGGGCCAGGTTggagt                                >  1:6843742/1‑147 (MQ=255)

                                                                                                                      gTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGa                                <  1:1209335/150‑1 (MQ=255)

                                                                                                                      gTCACTCGCCTCTGGAAACGGCCGGCTCCCCGGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGa                                <  1:6555373/150‑1 (MQ=255)

                                                                                                                       tCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAg                               <  1:8377201/150‑1 (MQ=255)

                                                                                                                        cACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAgg                              <  1:1412475/150‑1 (MQ=255)

                                                                                                                        cACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAgg                              <  2:2495072/150‑1 (MQ=255)

                                                                                                                         aCTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAggg                             <  1:2520127/150‑1 (MQ=255)

                                                                                                                           tCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGGTTCGC‑GGTGGGGGGCCTGGGCGTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGCACCGAGCAGGGCTGCCGCAGCGAGCAGGGCCAGGATGGCGAGGGCg                           >  2:6635011/1‑150 (MQ=255)

                                                                                                                             gCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTAGC‑GGTGTTGGGCCGGGGCTTTTTATTCGGGCATGTGGAAAAGCTGGTTAATCCA‑CGGTGAACCCAGCAGGGCTGCCGCAGCCATCAGGGCCAGGATGGCGAGGGCggg                         >  2:412872/1‑148 (MQ=255)

                                                                                                                              ccTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATg                        <  2:5808997/150‑1 (MQ=255)

                                                                                                                               ctctGGAAACGGGCGGCTCCCTTGGGGTCCCGTACTTTTCTC‑GTTTTTTGGCCTGGGCTTTTTCTGCGGGCTTGTGTTTACGCTTGTTCTTCCT‑CTTTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGACAGGATGTGGAggtctattt                       <  2:4796269/150‑8 (MQ=255)

                                                                                                                               ctctGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACCCTGGTTCATCCA‑CGGTGAACCGAGCCGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGt                       >  2:7098352/1‑150 (MQ=255)

                                                                                                                                tctGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTGGC‑GTTGTTTGGCCGGGGCGTTTTCTGCGGGCATGTGGTAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTa                      >  2:1944621/1‑150 (MQ=255)

                                                                                                                                tctGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTa                      <  2:2366204/150‑1 (MQ=255)

                                                                                                                                 ctGGACACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAg                     <  1:5423510/150‑1 (MQ=255)

                                                                                                                                 ctGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAg                     <  1:8327846/150‑1 (MQ=255)

                                                                                                                                 ctGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAg                     <  2:3553193/150‑1 (MQ=255)

                                                                                                                                       aCGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGCTGGAGGTCTTc               >  2:6585603/1‑150 (MQ=255)

                                                                                                                                       aCGGCCGGCTCCCCTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAGGTCTTc               <  1:8575588/150‑1 (MQ=255)

                                                                                                                                                tCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAGGTCTTCACGGGCGTg      >  2:3273589/1‑150 (MQ=255)

                                                                                                                                                   cTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGGGGAAACGCAGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAGGTCTTCACGGGCGTgcgc   >  2:1834532/1‑150 (MQ=255)

                                                                                                                                                    ttGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAGGTCTTCACGGGCGTGCGCa  <  1:6899027/150‑1 (MQ=255)

CCATGGCCTTCATGCCTGACTACCAGATCCTGGTCATTTCCACCGGTATCGCTGCGGCGGTCGTGGTGGCGATGGGTGTGGTGCACCAGATCCGCTCTGGTAGCAAGCAGCACTAAGCGTCACTCGCCTCTGGAAACGGCCGGCTCCCTTGGGGACCCGGCCGTTTCGC‑GTTGTTGGGCCTGGGCTTTTTCTGCGGGCATGTGGAAACGCTGGTTCATCCA‑CGGTGAACCGAGCAGGGCTGCCGCAGCGATCAGGGCCAGGATGGCGAGGGCGATGTAGGTCTTCACGGGCGTGCGCA  >  NC_002947/2892255‑2892552

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`