| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,055,183 | G→A | 10.5% | intergenic (+19/+27) | PP_2664 → / ← agmR | two‑component system sensor histidine kinase/response regulator/glycerol metabolism activator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,055,183 | 0 | G | A | 10.5% | 404.4 / 30.1 | 163 | intergenic (+19/+27) | PP_2664/agmR | two‑component system sensor histidine kinase/response regulator/glycerol metabolism activator |
| Reads supporting (aligned to +/- strand): ref base G (69/66); new base A (10/6); total (79/84) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.16e-01 | |||||||||||
Only 100 of 172 total aligned reads displayed.
TCACGGTCAACTACAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCGGCGAT > NC_002947/3055034‑3055332 | tCACGGTCAACTACAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCggg < 2:5639984/150‑1 (MQ=255) cACGGTCAACTACAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGt < 2:1544936/150‑1 (MQ=255) cACGGTCAACTACAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGt < 2:2235200/150‑1 (MQ=255) cACGGTCAACTACAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGt < 2:7889327/150‑1 (MQ=255) cGGTCAACTACAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTAGCGGGttt > 1:2803053/1‑149 (MQ=255) ggTCAACTACAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGa < 1:3370882/150‑1 (MQ=255) aCTACAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCGTAGCGGGTTGATCagc > 2:3888247/1‑150 (MQ=255) tACAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑a > 2:5246178/1‑150 (MQ=255) tACAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑a > 2:6504653/1‑150 (MQ=255) cAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAg < 1:5725212/150‑1 (MQ=255) aGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGc < 2:8395553/150‑1 (MQ=255) aGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGATCAACCCGCG‑AAGc < 1:5530293/150‑1 (MQ=255) aGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGATCAACCCGCG‑AAGc < 1:4030427/150‑1 (MQ=255) cAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGATCAACCCGCG‑AAGCgg < 2:6619192/150‑1 (MQ=255) aCGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTGGCGGGTTGATCCGCG‑AATCgggc > 2:3738119/1‑148 (MQ=255) aCGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATGCGGG‑TAGCGGcc > 2:3738059/1‑150 (MQ=255) cGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCTTAAGACCGATTAAACTCAAGACGGGGATGAGCCATCTGCTGGCCTGTGGCTTGGCATTGGGTTTGGCGGCTTCGGGGTTTTATCCGCG‑AAGCGGCCg < 2:4116805/150‑1 (MQ=255) aaGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCGTAGCGGGGTGATACGCGAAACCGGCCGGacacc > 1:7007393/1‑146 (MQ=255) aaGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCCCATAGCGGGTTTATACGCG‑AAGCCGCCGGAACAGc > 1:7467806/1‑150 (MQ=255) gcagcaGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGATCAACCCGCG‑AAGc > 1:8258176/1‑136 (MQ=255) cagcagATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCGTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCa > 2:4683849/1‑150 (MQ=255) gcagATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCATCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAAc > 2:4327820/1‑150 (MQ=255) agATCCGCTAACTGGGTCACACGCTTTTGCACAAGCCCTTAAGACCTATGAAACTCAAGACGGCGTTGCGCCATGTGCTGGCCTTTGGCTTGGCATAGCGTTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACgg < 2:3510215/150‑1 (MQ=255) agATCCGCGAACTGGGTAACACGCTGATGCACAAGCCCTTAAGACCTTTTAAACTCAAGACGGCGATGAGCCATCTGGTGGCCTGTGGCTTGGCATAGCGGTTGGCCGCTTCGGGGGTTTATCCGCG‑ATGGGGCCGGAACAGCTCAACgg < 2:3510200/150‑1 (MQ=255) gATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCGTAGCGGGGTTTTACGCG‑AAGCGGCCGGGACAGCGCaaacgc > 1:8573869/1‑146 (MQ=255) gcgAACTGGGTCACACGTTGTTGCACAAGCCCGTAAGCCCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGa < 2:5643950/150‑1 (MQ=255) gAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATa > 2:5245326/1‑150 (MQ=255) tGGGTCACACTCTGTTGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATGTGGTGGCCTGTGGCTTGGCATTGGGTTTGGCCGCTTGGCGGGTTGATCGGCT‑ATGCGGCCGGAACAGCTCAACGGCGCAGATAATCa < 2:6349223/150‑1 (MQ=255) gggTCACACGCTGATGCACAAGCCCGTAAGACCGATGAACCTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAg < 2:3577895/150‑1 (MQ=255) ggTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGc > 2:5875618/1‑150 (MQ=255) cacaCGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTGCGCGGGTTGATCCGCG‑AAGCGGCCGGGACCGCTCAACGGCGCAGATAATCAGCaaa > 2:8789031/1‑150 (MQ=255) acGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTAGCGGGTTGATACGCG‑AAGCGGCCGGAACAGCTCAACGGCGCCGATAAAAAGCaaaaac > 2:2421349/1‑148 (MQ=255) ggtgttGCACACGCCCGTACGTCGGTTGAACCTCTTGCGGGCGATGAGCCTGCTGCTGGCCTGGGGGTTGGCTTCGCGGTGGGCGGGTTGGGGGGTTGATCGGCG‑CAGGGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGa < 2:5007665/145‑1 (MQ=255) gCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCGTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACCGCGCCGATAAAAAGCAAAAACGa > 2:3422858/1‑150 (MQ=255) gCTGATGAACAAGCCCTTAAGACCGATGAAACTCAAGACGGCGATGAGCAATCTGGTGGCCTGTGGCTGGGCATAGGGTTTGGCCGCTGCGCGGTTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGa < 2:7737089/150‑1 (MQ=255) cTGATGCACACGCCCTTAAGACCTATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGAATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGat < 2:6968965/150‑1 (MQ=255) ttGCACAAGCCCGTACGACCGATGAAACTCAAGACGGCGATGAGCCATCTGGTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATc < 2:5453051/149‑1 (MQ=255) aaGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGTGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGc > 1:4034971/1‑150 (MQ=255) cgccgttAAGACCGATGAAACTCACGCCGGCGATTCGCAATCTGCGGGCCAGTGGCTGGGAATAGGGTTTGGCCGGTGCGCGTGTTGATCCGCT‑CAGAGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCa < 2:7079352/144‑1 (MQ=255) cccTTATGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCTGTGGCTTGGAATTGCGTTTGGCCGCTTCGCGGTTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACt < 2:5622921/150‑1 (MQ=255) cccGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATAACGCCAGCaag > 2:7566376/1‑148 (MQ=255) cGTAAGACCGATGAAACTCAATACGGCGATGATCCATCTGCTGGCCAGAGGCTTGGCATAGCGGTTGGCCGCGTCTCGGGTTGATACCCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCACCAAAAACGATAAAGCCAGAAATGa > 2:6740799/1‑150 (MQ=255) cGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCTGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGa < 2:4459393/150‑1 (MQ=255) ttAAGACCGATTAAACTCAAGACGGCTATGAGCCATCTGCTGGCCTGTGGCTTGGCATAGCGGTTGGCCGCTTCGGGGGTTTATCCGCG‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAg < 2:1015867/149‑1 (MQ=255) aGACCGATGAAACTCAAGACGGCGATGAGCAATCTGCTGGCCTGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGAt < 1:7578763/150‑1 (MQ=255) aCCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCGCACCGGCGCACATAATCAGCAAAATCGCTATCGCCCGCCCGGAGGCTgg > 2:7936525/1‑150 (MQ=255) ccGATTAAACTCAATACGGCGATTAGCCATCTGCTGGCCATTGGCTGGGAATAGCGTTTGGCCGCTTCGCGGTTTGATCGGCG‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGc < 2:1578917/150‑1 (MQ=255) tataaaaCTCAGGAGGGGGTTGTGACATCTGGGGGCATGTGGTTTGGCTTAGGGGTGGGCCGGTTCGGGGTTTGATCGGCG‑ATGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCtt < 1:7187422/146‑1 (MQ=255) gtttaaaCTCACGCCGGGTTTGCGCCTTCTGGTGGCCTGTGGCTTGGCTTTGGGGTTGGCCGCTTGGGGGGTTGATCGGCG‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCtt < 1:7247506/146‑1 (MQ=255) gAAACTCACGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCAGAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTa < 2:625044/150‑1 (MQ=255) aCTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCGTCGCGGGTTGTTCCCCG‑AACCGGCCGGGACAGCTCAAACGCGCAGAAAATAAGCAAAATAGATATCGCCACCACAGAGGATGGCGTGTAacc > 1:2847905/1‑150 (MQ=255) aCTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCGGCGCGGGGTGTTCCCCG‑AACCGGCCGGCACAGCTCAACCGCGCCGATAATAAGCAAAAAAGATAAAGCCCCCACAGAGGATGGCgtgttacc > 1:2848276/1‑146 (MQ=255) tCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCATCGCGGGGTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGAAAAATCGATAAAGCCAGCACAGAGGATGGGGTGTACCCgg > 2:8333251/1‑150 (MQ=255) tCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCCCTTCGCGGGGTGTTCCGCG‑AAGCGGCCGGAACAGCTCAACGCCGCAGATAATCAGCAAAATCGATATAGCCAGCACTGAGGTTGGCTTGTTccccg > 2:2401263/1‑148 (MQ=255) gACGGCGATGCGCCATCTGCTGGCCCGTGGCTTGGCAGCGCGGTGGGCCGCTTCGCGGGTGGAGCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTtgt < 2:4043609/150‑1 (MQ=255) gACGGCGATGAGCCATCTGGTGGCCTGTGGCTTGGCATCGGGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTtgt < 2:2271224/150‑1 (MQ=255) gAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCA‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGa < 1:1260827/150‑1 (MQ=255) cATCTGCTGGCCTGTGGCTTGGCTTTGCGGTTGGCCGCTTCGGGGTTTGATCCGCG‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGttt < 1:5100300/150‑1 (MQ=255) cATCTGCTGGCCTGTGGCTTGGAATAGCGGTTGGCCGCTTCGGGGTTTTATCCGCT‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGttt < 1:5100706/150‑1 (MQ=255) tggggtgGCCTGTGGTTTGGATTTGGGGTTGGCGGGTTGGGGGTTTTATCCGCG‑AGGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTgc < 1:3910056/145‑1 (MQ=255) tgggggggCCTGTGGGTTGGCTTGGCGGTGGGCCGCTGCGGGGGTTTACCCGCG‑ACGGGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTgc < 1:3910570/144‑1 (MQ=255) tgctgGCCAGTGGCTTGGCATAGCGGTTGGCCGCGTCGCGGGGTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAAAAAGCAAAATAGATATCGCCCGCACGGAGGATGGGTTGTACCCGGGTGTGCACAGTGGGTTTgcgc > 2:520380/1‑150 (MQ=255) ggCCTGGGGCTTGGATTCGGGTTTGGCCGCTTCGGGGTTTGACCCGCG‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCaaaa < 1:6504653/150‑1 (MQ=255) cctgTGGCTTGGCTTTGGGGTGGGCCGCTCCGGGGTTTGACCCGCG‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATc < 1:4225085/147‑1 (MQ=255) ccAGTGGCTTGGCATAGCGGTTGGGCGCTTCGCGGGGTGATACCCG‑GAGCGGCCGGCCCAGCGAAACGGCGCCGCTTAACACCAAAAAAGATATAGCCACCACGGGTGGTGGGGTGTGACCGGGTGTGGCCCATGAGTTTGGGCAAAATc > 2:2312028/1‑150 (MQ=255) cAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGGTGAACCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCACCAAAAACGATATCGCCAGCACAGAGGATGGCTTGTACCCGGTTGTTCACCGTGAGTTTGCGCAAAATCg > 2:6003399/1‑150 (MQ=255) aGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATAGATATCGCCCGCACTGAGGATGGCTTGTACCCGGTTGTGCACCTTGAGTTTGCGCAGAATCGc > 2:7582511/1‑150 (MQ=255) aGTGGCTTGGCATAGCGGTTGGCCGCGTCGCCGGGTTATCCCCG‑AAGCGGCCCGAACAGCACAACGGCGCAGAAAAAAACCAAAAACCATATCGCCAGCACTGAGGATGGCTTTTAACCCGTTGTGCACAATGAGTTTGCGCACAAACGc > 2:8569487/1‑150 (MQ=255) aGTGGCTTGGCATAGCGGTTGGCCGCATAGCGGGTTTATCCCCC‑AAGCGGCCCGAACACCGCAACCGCGCCGAAAAACACCAAAAACGAAAAAGCCACCACAGAGGATGGCTTGTAACCCGGTGTGGACAATGTGTTTTGGCaaaaaacc > 2:2358358/1‑146 (MQ=255) tGGCTTGGCATAGCGGTTGGCCGCGTCGCGGGTTTTTCCGCC‑GAGCCGCCCGGACAGCTCAAACGCGCAGAAAAACATCAAAAAAGATATAGCCACCACAGAGGATTGCTTGTAACCCGTTTTTCACAAAGAGTTTTCGCaaaaaagccc > 2:2537219/1‑144 (MQ=255) tGGCTTGGCATAGCGGTTGGCCGCGTCGCGGGTTGATACGCG‑AAGCGGCCGGAACAGCTCAAACGCGCAGATAATAAGCAAAATCGATAAAGCCAGCACTGAGGCTGGGTTGTACCCCGGTGTGCCCCGTGAGTTTTCGCAAAATAGCCg > 2:4939249/1‑150 (MQ=255) ggCTTGGCATAGCGGTTGGCCCCGTAGCGGGTTTATCCGCC‑CACCCGCCCGAACAGCGCAACGGCGCCGATAATAACCCAAATCGATATAGCCCGCACGGCTGATTGGGTGTTACCCGTTGTGCCCCATGAGGTTTGGCaaaaaagccca > 2:8058474/1‑143 (MQ=255) ttGGCATCGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAAc < 2:4776056/150‑1 (MQ=255) ggCATAGCGGTTGGCCGCTTGGCGGGTTGAGCCGCT‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGt < 1:5911686/150‑1 (MQ=255) gCATTGGGGTTGGCCGCTGCGGGGGTTTATCCGCT‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTg < 1:469200/150‑1 (MQ=255) gCATAGCGTTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTg < 2:6470676/150‑1 (MQ=255) cATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCT‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTgg < 2:2803053/150‑1 (MQ=255) cATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTgg < 1:9002327/150‑1 (MQ=255) tAGCGGTTGGCCGCTGCGCGGGTTGAGCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATCTCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGc < 2:7841307/150‑1 (MQ=255) gTTGGCCGCTTCGGGGGTTGATCCGCG‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGa < 1:8103607/150‑1 (MQ=255) gCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggt < 1:3688558/150‑1 (MQ=255) gCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggt < 1:8937178/150‑1 (MQ=255) ccGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggtg > 1:5292625/1‑150 (MQ=255) ccGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggtg > 1:9116111/1‑150 (MQ=255) cGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggtgg > 2:6265924/1‑150 (MQ=255) cGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggtgg > 2:2567669/1‑150 (MQ=255) gCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggtggt > 1:2529105/1‑150 (MQ=255) gCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggtggt > 2:2815319/1‑150 (MQ=255) gCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggtggt > 2:3525467/1‑150 (MQ=255) cTTCGCGGATCAACCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTtg > 1:8542013/1‑99 (MQ=39) ttCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGttt > 2:1070194/1‑150 (MQ=255) ttCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGttt > 1:4140771/1‑150 (MQ=255) ttCGCGGATCAACCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGttt > 1:5022863/1‑150 (MQ=255) ttCGCGGATCAACCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGCACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGttt > 2:6431318/1‑150 (MQ=255) ttCGCGGATCAACCCGCG‑AAGCGGCC‑‑AACCGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCg > 2:2096585/1‑150 (MQ=255) ggggTTGCCCCGCT‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCGGc < 1:3888247/149‑1 (MQ=255) cgGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCGGc < 1:6323056/150‑1 (MQ=255) cgGGTGGCTCCGCT‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCGGc < 2:4620606/150‑1 (MQ=255) gTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCGGCGAt < 1:4684277/150‑1 (MQ=255) gTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCGGCGAt < 2:4285552/150‑1 (MQ=255) | TCACGGTCAACTACAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCGGCGAT > NC_002947/3055034‑3055332 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |