| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,055,188 | T→C | 14.7% | intergenic (+24/+22) | PP_2664 → / ← agmR | two‑component system sensor histidine kinase/response regulator/glycerol metabolism activator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,055,188 | 0 | T | C | 14.7% | 363.4 / 39.5 | 162 | intergenic (+24/+22) | PP_2664/agmR | two‑component system sensor histidine kinase/response regulator/glycerol metabolism activator |
| Reads supporting (aligned to +/- strand): ref base T (67/64); new base C (10/13); total (78/84) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.52e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.91e-01 | |||||||||||
Only 100 of 167 total aligned reads displayed.
ACTACAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCGGCGATGTCCA > NC_002947/3055043‑3055337 | aCTACAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCGTAGCGGGTTGATCagc > 2:3888247/1‑150 (MQ=255) tACAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑a > 2:5246178/1‑150 (MQ=255) tACAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑a > 2:6504653/1‑150 (MQ=255) cAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAg < 1:5725212/150‑1 (MQ=255) aGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGc < 2:8395553/150‑1 (MQ=255) cAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCCCTTCGCGGGTTGATCCGCG‑AAGCgg > 2:4621707/1‑150 (MQ=255) cAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGAGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCgg > 1:5313582/1‑150 (MQ=255) aCGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTGGCGGGTTGATCCGCG‑AATCgggc > 2:3738119/1‑148 (MQ=255) cGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCTTAAGACCGATTAAACTCAAGACGGGGATGAGCCATCTGCTGGCCTGTGGCTTGGCATTGGGTTTGGCGGCTTCGGGGTTTTATCCGCG‑AAGCGGCCg < 2:4116805/150‑1 (MQ=255) ctcAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCGTAGCGGGGTTATCCCCC‑CAGCGGCCGGAAc > 1:6471672/1‑150 (MQ=255) aaGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGGCCCGGCGCGGGGTGTTCCGCG‑CAGCGGCCGGGACacc > 1:8400355/1‑148 (MQ=255) aaGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCGTAGCGGGGTGATACGCGAAACCGGCCGGacacc > 1:7007393/1‑146 (MQ=255) gcagcaGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGATCAACCCGCG‑AAGc > 1:8258176/1‑136 (MQ=255) gcagcaGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGATCAACCCGCG‑AAGc > 1:3869302/1‑136 (MQ=255) gcagcaGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCGGCGCGGGGTGGTCCGCG‑CAGCGGCCGGCACAGcgc > 1:3440478/1‑148 (MQ=255) ctgcagATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATTAAACTCAAGACGGCTATGAGCCATCTGCTGGCCCGTGGCTTGGCATAGCGTTTGGCCGCTTCGGGGGTTGAACCGCG‑ACGCGGCCGGAACAGCtat < 2:7903715/148‑3 (MQ=255) cagcagATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCGTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCa > 2:4683849/1‑150 (MQ=255) gcagATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCATCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAAc > 2:4327820/1‑150 (MQ=255) agATCCGCGAACTGGGTAACACGCTGATGCACAAGCCCTTAAGACCTTTTAAACTCAAGACGGCGATGAGCCATCTGGTGGCCTGTGGCTTGGCATAGCGGTTGGCCGCTTCGGGGGTTTATCCGCG‑ATGGGGCCGGAACAGCTCAACgg < 2:3510200/150‑1 (MQ=255) gATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCGTAGCGGGGTTTTACGCG‑AAGCGGCCGGGACAGCGCaaacgc > 1:8573869/1‑146 (MQ=255) gcgAACTGGGTCACACGTTGTTGCACAAGCCCGTAAGCCCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGa < 2:5643950/150‑1 (MQ=255) gAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATa > 2:5245326/1‑150 (MQ=255) tGGGTCACACTCTGTTGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATGTGGTGGCCTGTGGCTTGGCATTGGGTTTGGCCGCTTGGCGGGTTGATCGGCT‑ATGCGGCCGGAACAGCTCAACGGCGCAGATAATCa < 2:6349223/150‑1 (MQ=255) gggTCACACGCTTATGAACAAGCCCTTATGACCTATGAAACTCAAGACGGGGTTGAGCCATGTGGTGGCCTGTGGCTTGGATTAGCGGTTGGCGGGTTCGGGGGTTGATCCGCG‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAg < 2:202568/150‑1 (MQ=255) gggTCACACGCTGATGCACAAGCCCGTAAGACCGATGAACCTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAg < 2:3577895/150‑1 (MQ=255) ggTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGc > 2:5875618/1‑150 (MQ=255) tCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCaa > 2:4310140/1‑150 (MQ=255) cacaCGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTGCGCGGGTTGATCCGCG‑AAGCGGCCGGGACCGCTCAACGGCGCAGATAATCAGCaaa > 2:8789031/1‑150 (MQ=255) ccGCTGATGCACACGCCCGTACGCCCGATTAACCTCACGCCGGCGATGAGCCATCTGGTGGCCCGGGGCTTGGCATAGCGGTGGGCCGCGTGGCGGGTTGATCCGCG‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATc < 2:4013582/149‑1 (MQ=255) acGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCACAACGGCGCAGATAAACAGCaaaaac > 2:765897/1‑148 (MQ=255) acGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATACGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATc > 2:6512024/1‑150 (MQ=255) acGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTAGCGGGTTGATACGCG‑AAGCGGCCGGAACAGCTCAACGGCGCCGATAAAAAGCaaaaac > 2:2421349/1‑148 (MQ=255) ggtgttGCACACGCCCGTACGTCGGTTGAACCTCTTGCGGGCGATGAGCCTGCTGCTGGCCTGGGGGTTGGCTTCGCGGTGGGCGGGTTGGGGGGTTGATCGGCG‑CAGGGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGa < 2:5007665/145‑1 (MQ=255) gCTGATGCACAAGCCCGTAAGACCGATGAAACTCATGCCGGCGATGAGCCATCTGGGGGCCTGGGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGa < 2:7737798/150‑1 (MQ=255) cTGATGCACACGCCCTTAAGACCTATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGAATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGat < 2:6968965/150‑1 (MQ=255) tGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCCCG‑CAGCGGCCGGAAAAGCTCAACGGCGCCGATAAAAAGCAAAAAAGata > 1:738483/1‑150 (MQ=255) ttGCACAAGCCCGTACGACCGATGAAACTCAAGACGGCGATGAGCCATCTGGTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATc < 2:5453051/149‑1 (MQ=255) aTGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCTATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGTTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATc < 2:4949692/150‑1 (MQ=255) aaGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGTGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGc > 1:4034971/1‑150 (MQ=255) cccTTATGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCTGTGGCTTGGAATTGCGTTTGGCCGCTTCGCGGTTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACt < 2:5622921/150‑1 (MQ=255) cGTAAGACCGATGAAACTCAATACGGCGATGATCCATCTGCTGGCCAGAGGCTTGGCATAGCGGTTGGCCGCGTCTCGGGTTGATACCCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCACCAAAAACGATAAAGCCAGAAATGa > 2:6740799/1‑150 (MQ=255) cGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCTGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGa < 2:4459393/150‑1 (MQ=255) cGTAAGACCGATGAAACTCAAGACGGCGAGGAGCCATCTGGTGGCCTGTGGGTTGGCTTAGCGGTGGGCGGCTTCGGGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGa < 2:2631874/150‑1 (MQ=255) ttAAGACCGATTAAACTCAAGACGGCTATGAGCCATCTGCTGGCCTGTGGCTTGGCATAGCGGTTGGCCGCTTCGGGGGTTTATCCGCG‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAg < 2:1015867/149‑1 (MQ=255) aGACCGATGAAACTCAAGACGGCGATGAGCAATCTGCTGGCCTGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGAt < 1:7578763/150‑1 (MQ=255) aCCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCGCACCGGCGCACATAATCAGCAAAATCGCTATCGCCCGCCCGGAGGCTgg > 2:7936525/1‑150 (MQ=255) ccttttaaaCCCAAGACGGCTATGCGCCTTCTGCTGGCCTGGGGCTTGGATTCGGGGTGGGCGGCTGGGGGGGTTGACCCGCC‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGc < 1:4081043/144‑1 (MQ=255) cctttGAAACACACGCCGGCGTTGCGCCTTCTGGTGGCCTGGGTGTTGGCTTTGGGGTTGGCGGTTTGGGGGTTTGATCGGCT‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGc < 1:945900/146‑1 (MQ=255) ccGATTAACCCCAAGCCGGCGATGAGCCATCTGGTGGCCTGTGGCTTGGCTTAGCGGTTGGCCGCTTCGGGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGc < 2:2297923/150‑1 (MQ=255) ccGATTAAACTCAATACGGCGATTAGCCATCTGCTGGCCATTGGCTGGGAATAGCGTTTGGCCGCTTCGCGGTTTGATCGGCG‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGc < 2:1578917/150‑1 (MQ=255) ccGATGAAACTCCAGACGGCGATGAGCCATCTGCGGGCCAGTGGCTTGGCATTGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAACATCGATATCGCCAGCACTGAGGATGGc < 2:741256/150‑1 (MQ=255) gtttaaaCTCACGCCGGGTTTGCGCCTTCTGGTGGCCTGTGGCTTGGCTTTGGGGTTGGCCGCTTGGGGGGTTGATCGGCG‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCtt < 1:7247506/146‑1 (MQ=255) gATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCtt < 1:6001550/150‑1 (MQ=255) gATGAAACCCAAGCCGGCGATGAGCCAGCTGCTGCCCAGGGGCTTGGATTAGCGGTTGGCCGCTACGCGGGTTGACCCGCC‑CCGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCtt < 1:7246945/150‑1 (MQ=255) gAAACTCACGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCAGAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTa < 2:625044/150‑1 (MQ=255) aCTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCGGCGCGGGGTGTTCCCCG‑AACCGGCCGGCACAGCTCAACCGCGCCGATAATAAGCAAAAAAGATAAAGCCCCCACAGAGGATGGCgtgttacc > 1:2848276/1‑146 (MQ=255) aCTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCCCGTCGCGGGGTGATACCCG‑CAGCGGCCCGGACACCGCAACGGCGCAGATAATAAGCCAAAAAGAGATCGCCCGCACGGGGGATGGCGTGTAacc > 1:2847363/1‑150 (MQ=255) tCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCATCGCGGGGTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGAAAAATCGATAAAGCCAGCACAGAGGATGGGGTGTACCCgg > 2:8333251/1‑150 (MQ=255) tCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCCCTTCGCGGGGTGTTCCGCG‑AAGCGGCCGGAACAGCTCAACGCCGCAGATAATCAGCAAAATCGATATAGCCAGCACTGAGGTTGGCTTGTTccccg > 2:2401263/1‑148 (MQ=255) tCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCCCATAGCGCGTTGATCCGCG‑AAGCGGCCGGTCCAGCGCCACGGCGCAGATAATCAGCACAATCGCTATCGCCAGCACGGTGGGTGGCGTGTAGCCgg > 2:7018874/1‑150 (MQ=255) cggggttGAGCCTTGGGCGGGCCTGTGGGTGTGCATGGGGGTGGGCGGGTTGGGGGGTGGAGCGGCG‑CCGGGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGc < 1:5654058/144‑1 (MQ=255) ttgcgCCATGTGCGGGCCTGGGGGTTGGCATCGCGGTGGGCCGCTTCGGGGGTTGATCCGCG‑ACGGGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACAtt < 1:5232755/146‑1 (MQ=255) tGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTg < 2:3593675/150‑1 (MQ=255) gAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCA‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGa < 1:1260827/150‑1 (MQ=255) cATCTGCTGGCCTGTGGCTTGGCTTTGCGGTTGGCCGCTTCGGGGTTTGATCCGCG‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGttt < 1:5100300/150‑1 (MQ=255) aTCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCGTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATAAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCCCATTGAGTTTg > 2:2116875/1‑150 (MQ=255) tggggtgGCCTGTGGTTTGGATTTGGGGTTGGCGGGTTGGGGGTTTTATCCGCG‑AGGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTgc < 1:3910056/145‑1 (MQ=255) tCTGCGGCCCTGTGGTTTGCCTTCGGGGTTGGCCGGTTCGCGGTTTGAGCCGCG‑ACGGGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTgc < 1:3910471/150‑1 (MQ=255) tgctgGCCAGTGGCTTGGCATAGCGGTTGGCCGCGTCGCGGGGTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAAAAAGCAAAATAGATATCGCCCGCACGGAGGATGGGTTGTACCCGGGTGTGCACAGTGGGTTTgcgc > 2:520380/1‑150 (MQ=255) ggCCTGGGGCTTGGATTCGGGTTTGGCCGCTTCGGGGTTTGACCCGCG‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCaaaa < 1:6504653/150‑1 (MQ=255) ccAGTGGCTTGGCATAGCGGTTGGGCGCTTCGCGGGGTGATACCCG‑GAGCGGCCGGCCCAGCGAAACGGCGCCGCTTAACACCAAAAAAGATATAGCCACCACGGGTGGTGGGGTGTGACCGGGTGTGGCCCATGAGTTTGGGCAAAATc > 2:2312028/1‑150 (MQ=255) cAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGGTGAACCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCACCAAAAACGATATCGCCAGCACAGAGGATGGCTTGTACCCGGTTGTTCACCGTGAGTTTGCGCAAAATCg > 2:6003399/1‑150 (MQ=255) aGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATAGATATCGCCCGCACTGAGGATGGCTTGTACCCGGTTGTGCACCTTGAGTTTGCGCAGAATCGc > 2:7582511/1‑150 (MQ=255) aGTGGCTTGGCATAGCGGTTGGCCGCGTCGCCGGGTTATCCCCG‑AAGCGGCCCGAACAGCACAACGGCGCAGAAAAAAACCAAAAACCATATCGCCAGCACTGAGGATGGCTTTTAACCCGTTGTGCACAATGAGTTTGCGCACAAACGc > 2:8569487/1‑150 (MQ=255) aGTGGCTTGGCATAGCGGTTGGCCGCATAGCGGGTTTATCCCCC‑AAGCGGCCCGAACACCGCAACCGCGCCGAAAAACACCAAAAACGAAAAAGCCACCACAGAGGATGGCTTGTAACCCGGTGTGGACAATGTGTTTTGGCaaaaaacc > 2:2358358/1‑146 (MQ=255) tGGCTTGGCATAGCGGTTGGCCGCGTCGCGGGTTTTTCCGCC‑GAGCCGCCCGGACAGCTCAAACGCGCAGAAAAACATCAAAAAAGATATAGCCACCACAGAGGATTGCTTGTAACCCGTTTTTCACAAAGAGTTTTCGCaaaaaagccc > 2:2537219/1‑144 (MQ=255) ggCTTGGCATAGCGGTTGGCCCCGTAGCGGGTTTATCCGCC‑CACCCGCCCGAACAGCGCAACGGCGCCGATAATAACCCAAATCGATATAGCCCGCACGGCTGATTGGGTGTTACCCGTTGTGCCCCATGAGGTTTGGCaaaaaagccca > 2:8058474/1‑143 (MQ=255) ttGGCATCGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAAc < 2:4776056/150‑1 (MQ=255) gCATAGCGTTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTg < 2:6470676/150‑1 (MQ=255) cATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTgg < 1:9002327/150‑1 (MQ=255) gtgggggtGGCCGCTTGGGGGGTGGAGCCGCG‑ATGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAACTCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGc < 1:4001459/143‑1 (MQ=255) gTTGGCCGCTTCGGGGGTTGATCCGCG‑ACGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGa < 1:8103607/150‑1 (MQ=255) gCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggt < 1:8937178/150‑1 (MQ=255) cGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggtgg > 2:6265924/1‑150 (MQ=255) cGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggtgg > 2:2567669/1‑150 (MQ=255) gCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggtggt > 1:2529105/1‑150 (MQ=255) gCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggtggt > 2:2815319/1‑150 (MQ=255) gCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACggtggt > 2:3525144/1‑150 (MQ=255) ttCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGttt > 2:1070194/1‑150 (MQ=255) ttCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGttt > 1:4141074/1‑150 (MQ=255) ttCGCGGATCAACCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGttt > 1:5023132/1‑150 (MQ=255) ttCGCGGATCAACCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGCACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGttt > 2:6431019/1‑150 (MQ=255) cgcgGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCg > 1:5004614/1‑150 (MQ=255) gTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCGGCGAt < 1:4684277/150‑1 (MQ=255) gTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCGGCGAt < 2:3440478/150‑1 (MQ=255) gTTGACCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCGGCGAt < 1:4683849/150‑1 (MQ=255) tCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCGGCGATGTCCa > 1:8869927/1‑150 (MQ=255) tCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCGGCGATGTCCa > 1:7895806/1‑150 (MQ=255) tCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCGGCGATGTCCa > 1:5273571/1‑150 (MQ=255) tCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGGTGTGCCCATTGAGATTGCGCAAAATCGCCGACACGTGGGCCTGGACGGTGGTTTCGGCGATGTCCa > 1:5273588/1‑150 (MQ=255) | ACTACAGCAACGATCTCAAGCAGCAGATCCGCGAACTGGGTCACACGCTGATGCACAAGCCCGTAAGACCGATGAAACTCAAGACGGCGATGAGCCATCTGCTGGCCAGTGGCTTGGCATAGCGGTTGGCCGCTTCGCGGGTTGATCCGCG‑AAGCGGCCGGAACAGCTCAACGGCGCAGATAATCAGCAAAATCGATATCGCCAGCACTGAGGATGGCTTGTACCCGGTTGTGCACATTGAGTTTGCGCAAAATCGCCGAAACGTGGGCCTTGACGGTGGTTTCGGCGATGTCCA > NC_002947/3055043‑3055337 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |