| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,321,139 | T→G | 11.3% | intergenic (‑138/+54) | treSA ← / ← PP_2919 | trehalose synthase A/LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,321,139 | 0 | T | G | 11.3% | 483.1 / 4.1 | 205 | intergenic (‑138/+54) | treSA/PP_2919 | trehalose synthase A/LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (75/99); new base G (19/10); total (96/109) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.81e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 209 total aligned reads displayed.
GGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCGGTG > NC_002947/3320990‑3321288 | tCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCtgt < 2:6883519/150‑1 (MQ=255) caggcggtgcgcaattacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggcctcttcgcgggcgcGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCtgt > 1:4417565‑M1/102‑150 (MQ=255) ggcggtgcgcaattacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggcctcttcgcgggcgcGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCGGCACCTGTgg > 2:3906371‑M1/100‑150 (MQ=255) aTTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTgg < 2:2081530/150‑1 (MQ=255) aTTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTgg < 1:7774432/150‑1 (MQ=255) tttCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTggg > 2:8949985/1‑150 (MQ=255) cggtgcgcaattacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggcctcttcgcgggcgcGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGa > 1:186488‑M1/98‑150 (MQ=255) cgcgTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGc < 1:43136/150‑1 (MQ=255) cgcgTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGc < 1:4487867/150‑1 (MQ=255) cgcgTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGc < 1:3443681/150‑1 (MQ=255) gcgTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCCCTCCCCCAGGCGGCCATACCGCGGAATAGTTGCGCTGCACCGTTGGGAGCg > 1:7434486/1‑150 (MQ=255) gcgTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCCCGCCCACAGGCGGACCAACCGCGGAAGGTTTGCGCTGCACCGGGGGGGGCg > 2:842330/1‑150 (MQ=255) gcgcaattacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggcctcttcgcgggcgcGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCgg > 1:1990114‑M1/94‑150 (MQ=255) cgTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCgg < 2:7425321/150‑1 (MQ=255) gTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACCTGCCGCAGAAGAATTGCGCTGCACCAGTGGGAGCggg > 1:9058131/1‑150 (MQ=255) gTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCCCTCACAAACGCCGCCATACCGCCGAAGAATTGCGATGCACCAGAGGTACCggg > 1:9058715/1‑150 (MQ=255) tCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCCCAGGCGGACATACCGCAGAAGATTTGCGCTGCACCAGTGGGCGCGGgc > 2:3068101/1‑150 (MQ=255) caagtacttccatgatgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggcctcttcgcgggcgcGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGgcg > 2:8605666‑M1/91‑150 (MQ=255) tctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGGTTTGCAGCTCCCACAGGCGGTCGTAACGCGGAAGATTTGGGGTGCACGAGTGGGGGCtgggggg > 1:8884212/1‑146 (MQ=255) tctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGGGTGGCCGCGCCCCAAGGCGGGCATACCGCGGGAGGTATGCGGGTCACCAGGgggggcgggggcc > 1:7749360/1‑149 (MQ=255) tctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTTCCCGCGCCCACACGCGGCCCTACCCCAGAATATTTGCGCTGCACCAGGGGGAGCGGgcgcg > 1:8199119/1‑150 (MQ=255) tctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACCTACCGCAGAAGGGTTGCGCGGCACCAGAGGGAGCGGgcgcg > 2:4488593/1‑150 (MQ=255) tctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCGGCAGATTTGTGCTGCACCGGTGGGAGCGGgcgcg > 2:3391287/1‑150 (MQ=255) tctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCGTTCCCGCGCCCACACGCGGGCCGACCCCGGAAGGGTTGGGCTGCCCCGGGGGGAGCggggggg > 1:4281073/1‑146 (MQ=255) tctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCCGGCTTGGCCGCGCCCCCACCCCGCCAGACCCCGGCAGATTTGCGCGGCACCCGGGGGGGCGGgcgcg > 1:7260773/1‑150 (MQ=255) ctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGgcgcgc < 2:666501/150‑1 (MQ=255) ctTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGgcgcgc < 2:131691/150‑1 (MQ=255) tgtCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGaa < 2:1242578/150‑1 (MQ=255) tCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAaga < 2:6441216/150‑1 (MQ=255) tgcgtttctggcaccgcagcagttgtcggcccggcgctgatcctgcctttgcaggcccggcctcttcgcgggcgcGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGa < 1:960485‑M1/53‑1 (MQ=255) gCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCGCCCACACGGGGACCTACCGCACAAGAATTGGGCGGCACAAGAGGGACCTGGAACGCCCGCCaaaacgc > 1:8326007/1‑145 (MQ=255) ccGGCTCAGGTTATGCCGGCGCGGCGGCCTGACCGTGCGGCTCAAGAGGGGTGTTGGTTTCTGCGCGGGCTGGCCCGCGCCCCCCGGCGGACATACCGCTGAAGATTTGCGCTGCACCGGTGGGAGCGGGCGCGCCCGCGAAGAGGCCgg < 2:8740697/150‑1 (MQ=255) ccGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTTCCCGCTCCCACAGGCCGACATACCGCTGAAGATTTTGGCGGGACCGGTGGGAGCGGGCGCGCCCCCCAAGAGGCCgg > 2:825654/1‑150 (MQ=255) ccGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCgg < 2:2174769/150‑1 (MQ=255) ccGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGGTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCCCCGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCgg < 2:2710677/150‑1 (MQ=255) cGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCACACAGGCCGACATACCGCGGAAGAATTGCGGTGCACCAGTGGGTGAGGGCGCGCCCGCCAAGACGCCggg > 2:4391985/1‑150 (MQ=255) ggCTCTGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCCCAGGCGGACATACCGCTGAATATTTGCGCGGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGc < 2:916951/150‑1 (MQ=255) gTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCaaa < 2:9042920/150‑1 (MQ=255) gTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCaaa < 2:2203026/150‑1 (MQ=255) gTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCCGACAGACCGCGGAAGAGTTGCGCTGCACCATGGGGAGCGGGCGCGCCCGCGGAGAGGCCGGGCCCGCaaa > 2:9157284/1‑150 (MQ=255) gTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGCCCGCCAGCCCGCCGAAGCATTGCGCTGCACCGGGGGGACCGGGCCCGCCCGCCCAGACGCCGGGCCAGCacc > 2:9157290/1‑148 (MQ=255) ttATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCATGCCCGCGCCCCCAGGCGGGCATACCCCGGAAGATTTGCGCTGCACCGGGGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCGGCAAAg > 2:2326848/1‑150 (MQ=255) cGGGGCGGCGGCCTGAACGTCCGGCACACGAGGGGTGGTGGTTTCTTCGCGGGCTGGCCCGCCCCCACCGGCGCACAAACCGCTTAAGATTGGCGCGGCACCTGGGGGCGGGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGa < 1:5700255/150‑1 (MQ=255) cGGCGCTGCGGCCGCACCGTTCGGCTCAAGAGGGGTGTGGGTTTCTGCGCGGGGTTGCCCGCCCCCACCGGCGGACATACCGCTGAAGATGTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGa < 1:6451727/150‑1 (MQ=38) cgcgGCGGCCTGCCCGTTCGGCACATGTGGGGTGTTGGTTTCTGGGGGGGCTGGCCCGCACCCCCCGGCGCACATCCCGCTGAAGATTTGCGCGGCCCCGGTGGGCGGGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCa < 1:8641039/150‑1 (MQ=255) cgcTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCa < 2:4249386/150‑1 (MQ=255) cgcTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCa < 2:3676966/150‑1 (MQ=255) cTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAgc < 2:6218441/150‑1 (MQ=255) tGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCCCGCCCACACGCGGACAAACCGCTGAACATTTGCGCAGCACCCGTGGGAGCCGGCGCCCCCGCGAAGCGGCCGGGCCAGCAAAGGCACGATCAgcg > 2:1102540/1‑150 (MQ=255) ccTGACGGTTCGGCTAAAGTTGGGGGTGGTTTTCTTCGCGGGGTGCCCCGCCCCCACGGGCGGAAATACCGCTCAATATTGGCGCGCCACGTGTGGGCGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCggg < 1:6136474/150‑1 (MQ=255) ccTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCGCCCACAGGCGGACATACCGCGGAAGAGTTGCGCTGCACCGGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCGGCAAAGGCAGGATCAGCGCCggg > 2:6983921/1‑150 (MQ=39) tGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGcc < 1:3617753/150‑1 (MQ=255) aaCGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTTCCCGCGCCCACAGGCCGGCAAACCCCCGAAGATTTTCGCTGCAACAGTGGGGGCGGGCGCGCCCGCGAAGATGCCCGGCCAGCAAAAGCAGGATCAGCGCCGGGCCGa > 2:1533931/1‑150 (MQ=255) ttCGGCTCAAGAGGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAAc < 2:7503594/150‑1 (MQ=255) tgcGGCTCACGTGGGGTGTGGGTTTCTGCGGGGGGTGGCCCGCCCCCACTGGCGCCCATCCCGCTCAATTTTGGCGGGGCCCCGGGGGGCGGGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAAc < 1:1557330/148‑1 (MQ=255) gCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAActgct < 2:3950589/150‑1 (MQ=255) aGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACCGGCGGACATACCGCTGAAGATTGGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGt < 2:5634301/150‑1 (MQ=255) gggTGTTGGTTTCTTCGCGGGCTTGCCCGGTCCCGGAGGGGGGCATTCCGGGGTAGTTTTGGGGTGCACCAGTGGGTGCGGGCGGGGCCGGGTAGAGGCCGGGCCTGCAAAGGGGGGTTCAGGGGCGGGGCGACAACGGCTGCGGTGGCa > 2:4511528/1‑150 (MQ=255) ttGGTTTCTTCGCGGGCTTGCCGGCTCCCACAGGCGGACATACCGCTGAAGTTTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAAc < 1:4495032/150‑1 (MQ=255) tgggTTTCGTCGCGGGCTGGCCCGCTCCCACCGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGGGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAAc < 2:129924/148‑1 (MQ=255) tttCTTCGCGGGCTTGCCCCCGCCCCCACGCGGACAGACCCCGGCAGCTTTGCGCGGCCCCCGTGGGGGCGGGCCCGCCCGCGCAGAGGCCCGGCCTGCCAAGGCAGGAGCACCCCCCGGCCGCCAACAGCAGCCGGGCCCGCAACGcct > 2:3385820/1‑148 (MQ=255) gttcGGGGGCTTGCCGGCTCCCACTGGGGGACATACCGCTGATGTTTTGCGCTGCACATGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGcatcat < 1:1949506/149‑1 (MQ=255) ttcGGGGGCTTGCCCGCTCCCACCGGCGTACATACCGGTGAATTTTTGCGCTGCACGTGGGGTAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATg < 1:2424963/150‑1 (MQ=255) gggggCTGGCCCGCTCCCACAGGGGGACATCCCGCTGATGATTTGCGCGGCACGGGTGGGCGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGaa < 1:3078712/148‑1 (MQ=255) gcgggcggGCCCGCTCCCACCGGCGGACATACCGCGGAAGATGTGCGCTGCACCGGTGGGAGCGGGCGCGCCCGCGCAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGaa > 2:1892264‑M1/9‑150 (MQ=255) gcgGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGaa > 1:2699885/1‑150 (MQ=255) cgGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAg > 2:482712/1‑150 (MQ=255) gCTTGCCCGCCCCCCCCGGCGGAAAACCCGCTGATTTTTGGCGCGGCACGGGGGGGCGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTaa < 1:3287732/150‑1 (MQ=255) ttGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAAtt > 2:4677107/1‑150 (MQ=255) ttGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAAtt < 1:7588965/150‑1 (MQ=255) ttGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAAtt > 1:5149125/1‑150 (MQ=255) ttGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAAtt > 2:6852512/1‑150 (MQ=255) GCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTgc < 2:4112285‑M1/150‑1 (MQ=255) CCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTgcgc < 1:523484‑M1/150‑1 (MQ=255) CCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTgcgc < 2:2824404‑M1/150‑1 (MQ=255) CGCTCCCACTGGCGGACATACCGCTGAAGATTTGCGCTGCACCTTTGGGTGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCa > 1:1277602‑M1/1‑150 (MQ=255) CGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCAGGGCAGTAATTGCGCa < 1:4829233‑M1/150‑1 (MQ=255) CCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGcc > 2:5424760‑M1/1‑150 (MQ=255) CCACAGGCGGACATACCGCTGAAGATTTGCGCTGAACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGc > 1:3415642‑M1/1‑98 (MQ=255) ccCAGGCGTACATACCGCTGAAGATTTGCGCGGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCt > 2:4028‑M1/3‑150 (MQ=255) CACTGGCGGACATACCGCTTATGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCt > 1:7828176‑M1/1‑150 (MQ=255) CACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCt < 2:6876184‑M1/150‑1 (MQ=255) ACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTg < 1:131134‑M1/150‑1 (MQ=255) gGGCGTAAATAGCGCTTACGATTTGCGCTGAACGTGTGGGTGGGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCa > 1:1223493‑M1/2‑150 (MQ=255) GCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATc < 2:1372182‑M1/150‑1 (MQ=255) ggACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGc > 1:1021684/1‑150 (MQ=255) aCCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCt > 2:7740468/1‑150 (MQ=255) cGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGa > 2:250263/1‑150 (MQ=255) tGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGc < 2:731650/97‑1 (MQ=255) tGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGc > 1:731650/1‑97 (MQ=255) tGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGATGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATg > 2:524768/1‑150 (MQ=255) ataTTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGccc < 1:4961695/148‑1 (MQ=255) aGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGccc < 2:8326007/150‑1 (MQ=255) aGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGccc < 1:6287670/150‑1 (MQ=255) tttGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGtt > 1:3781553/1‑150 (MQ=255) gcgcTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTccc < 2:3714883/150‑1 (MQ=255) gcgcGGCACCTGGGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCCAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTccc < 2:8025328/150‑1 (MQ=255) cgcTGCACCGGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCg < 1:1804438/150‑1 (MQ=255) cTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCGGt < 1:6855232/150‑1 (MQ=255) tGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCGGTg < 1:7628808/150‑1 (MQ=255) | GGGCTGGGTCATTTCGCGTCCTCTTTGCGTGTCGGCACCGGCTCAGGTTATGACGGCGCTGCGGCCTGAACGTTCGGCTCAAGATGGGTGTTGGTTTCTTCGCGGGCTTGCCCGCTCCCACAGGCGGACATACCGCTGAAGATTTGCGCTGCACCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCGGTG > NC_002947/3320990‑3321288 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |