| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,580,393 | T→A | 6.8% | intergenic (+105/‑219) | PP_3158 → / → PP_5589 | hypothetical protein/rhs repeat‑associated core domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,580,393 | 0 | T | A | 6.8% | 683.7 / 11.5 | 253 | intergenic (+105/‑219) | PP_3158/PP_5589 | hypothetical protein/rhs repeat‑associated core domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base T (108/119); new base A (21/2); total (132/121) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.77e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 266 total aligned reads displayed.
GCGCAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATGGT > NC_002947/3580247‑3580542 | gcgcAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAtttt > 1:3000654/1‑150 (MQ=255) cgcAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAttttt < 1:1444148/150‑1 (MQ=255) cgcAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTCTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAttttt < 2:1935144/150‑1 (MQ=255) cAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGc < 2:4106612/150‑1 (MQ=255) gagCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCa < 1:7509275/150‑1 (MQ=255) ccTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGtt < 1:3136153/150‑1 (MQ=255) cTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTg < 2:449973/150‑1 (MQ=255) tGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTGCCACTTGc > 2:554302/1‑150 (MQ=255) tGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAAAGGCATTTTTGCCAGTTGc > 1:1338164/1‑150 (MQ=255) gTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCa < 1:2125611/150‑1 (MQ=255) ttGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCGGCAACTGGCAGTTTTGGCAGTTGCAg > 2:4637740/1‑150 (MQ=255) cTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGa < 1:7486457/150‑1 (MQ=255) tgatgaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAATGGCATTTTTTCCAGTTTCAGCGAg > 2:5805032/1‑150 (MQ=255) gatgaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAATGGGATTTTTTCCAGTTGCATCGAgt > 1:3576784/1‑150 (MQ=255) atgaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAgtg > 2:4193370/1‑150 (MQ=255) tgaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAgtgt > 2:320731/1‑150 (MQ=255) tgaACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAAGGCACATACTTGAATTAGGATTGAGTTTATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGAAACTGGCATTTTTGCCAGTTGCAGCGAgtgt < 2:7262907/150‑1 (MQ=255) taaCTTCCTGCGGGTGCATTATGAGGCCTCTGCCGCACGCCCTTTGCTAAATCCCCATACTTGATTGAGGTTTGTTTTGATGTGTGTTCATGAGCTAATCAAGTTTTCGTCGGGCTGAAACTGGCTTTTTTGCCATTTGCAGCGAGTGTa < 1:2565737/149‑1 (MQ=255) cTTCCTGCCGGTGCAGTAAGAGGCCTCGGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGa < 2:5914446/150‑1 (MQ=255) ttCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGGGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTGCCAGTTTGAGCGAgtgtgtttc > 1:3955917/1‑145 (MQ=255) ttCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTGCCAGTTGCAGCGAGTGTATTAc > 1:5932186/1‑150 (MQ=255) ttCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCAATTTTTCCAGTTTCAGCGAGTGTATGAc > 1:2764402/1‑150 (MQ=255) tGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGcc > 2:4967794/1‑150 (MQ=255) aGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCa < 1:9122685/150‑1 (MQ=255) aGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTTCCAGGTGCAGCCAGTGGATTACAACCAAGaaaaca > 1:1607789/1‑146 (MQ=255) ttAAGTGGCCTCTGCCGCACGCCCTTTGCGAAATGCCAATACATTAATGAGTTTTGAGTTTATGTGTTTTCATGCGCTAATCAAGGTTTCGTGGGGCTGAAACTGGCATTTTTGCCTTTTGCAGCGAGTGTATGACAGCCTAGAATTCaa < 1:1171380/149‑1 (MQ=255) gTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACTTGAATGAGGATTGAGTTGATGAGTTTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCaa < 2:3415570/150‑1 (MQ=255) gTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCaa < 2:2400284/150‑1 (MQ=255) gTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTTCCAGTTTCAGCGAGGGGATGACAGCCAAGaaataaa > 1:7759315/1‑145 (MQ=255) gTAAGAGGCCTCTGCCCCACGCCATTTGCTAAATGCCCATACATTAATGAGTATTGAGTTGATGAGTGTTCATGAGCCAAACAACGTTTCGTCGGGCTGAAACTGCAATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCaa < 1:1032936/150‑1 (MQ=255) aaGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACTTGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGAATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAgg < 2:1205552/150‑1 (MQ=255) aaGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCTTGAGCGAATCAAGGTTTCGTCGGGCTGCAACTGGAATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAgg < 1:4545476/150‑1 (MQ=255) aaGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATAAATGAATGAGTATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTGGGGCTGCAACTGGAATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAgg < 1:6242670/150‑1 (MQ=255) gagGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAAATGGGAATTTTTGCACTTGCAGCGAGTTTTTTAAAACCAAGAATTAAAGGGa > 1:6442551/1‑150 (MQ=255) ccTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATg < 2:1754441/150‑1 (MQ=255) ccTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCCTTTTTGCCAGTTGCAGCGAGTGTATGTAAGCCGAGAAATGAAGGGAAATg > 1:2014201/1‑150 (MQ=255) tctGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGCGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGgt < 1:2657508/150‑1 (MQ=255) tctGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGgt < 2:3704270/150‑1 (MQ=255) tctGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGgt < 2:1414999/150‑1 (MQ=255) ctGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGgtg > 2:5315765/1‑150 (MQ=255) tGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGGGGCAACAAGCAATTTTTCCACGTTCAGCCAGTGTATGACAACCAAGAAATAAAGGGAAAAGgtgt > 1:2495053/1‑150 (MQ=255) gCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGtt < 2:4827190/150‑1 (MQ=255) ccGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTAAAGGGAAAAGGTGTtc > 2:6083110/1‑150 (MQ=255) ccGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTTCCACTTTCAGCGAGTGTATGAAAGCCAAGAAATAAAGGGAAAATGTGttg > 1:4228462/1‑149 (MQ=255) ccGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTGCCAGTTGCAGCGAGTGTATGCCAGCCTAGAATTCAAGGGAAATGGGGTtc > 2:8305216/1‑150 (MQ=255) gCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTTCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTtctc > 1:5339743/1‑150 (MQ=255) cGCCCTTGGCGAAATGCCAATACATGAATGAGGATTGATTTGATGATTGTTCATGAGCTAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTaa < 1:8947793/150‑1 (MQ=255) gCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTTCAAAAGGCAATTTTTCCAGTTGCAGCGAGTGTATTAAACCCAAGAAATAAAAGGAAAATGTGTTATATaat > 1:7312930/1‑149 (MQ=255) gCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCAATTTTGCCCGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGGGTTCGCGAAg > 2:7107621/1‑150 (MQ=255) ccTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCGGCAACAGGCATTTTTTGCCGTTGCAGCGCGTGGATGGCCCCCCACAATTAAAGGGCAAAGGGGGTGTCTGAggg > 1:32976/1‑149 (MQ=255) tttGCTAATTGCCCATACATGATTGAGTTTTTTGTTTATGAGTGTTCTTGTGCGAATAAACGTTTGGTGGGGCTGAACCTGGAATTTTTGCCTGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCa < 1:2516441/150‑1 (MQ=255) tttGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCTAATCAACGTTGCGTCGGGCTGCAACTGGCTTTTTTGCCTGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCa < 1:4833422/150‑1 (MQ=255) gCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGGTGCAACAGGCCATTTTTCCACGTGCAGCGGGTTTTTGACAGCCAAGAAATGAAGGGAAAATGTGTTGTCGAAGGTCATTa > 1:2311774/1‑150 (MQ=255) gAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCAATTTTTCCAGTTTCAGCGAGTGTATTACAGCCTAGAAATCAAGGGAAATGGTGTTCTCTAAGGTCATTAAt > 2:2468450/1‑150 (MQ=255) aaaTGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCAGCAACACGCAGATTTGCCACTTGCAGCGCGTGTAAGACCGCCCACAATACAAGGGAAAAGGGGGTCACAAAGGTCAATaaac > 2:5673081/1‑148 (MQ=255) aTGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCAAATTTGCCAGTTTAACCCAGTTTATTAAACACAATAATTAAATGTAAAAGGTGTTATATAAGGTAAATaaaagt > 2:2742809/1‑146 (MQ=255) gCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGa < 2:5635077/150‑1 (MQ=255) gCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGAAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGa < 1:8104987/150‑1 (MQ=255) cccATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGaa < 2:4767921/150‑1 (MQ=255) cATGAATGAGGTTTGTGTGGATGAGTGTTCATGAGCTAATCAACGTTTCGTCGGGCTGCAACTGGAATTTTTGCCTGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTc < 1:148481/150‑1 (MQ=255) cATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTTCAACAGGCATTTTTGCCAGTTGCAGCGAGTGTATGAAAGCCTAGAATTCAAGGGAAAATGTGTTATCTAAAGTAATTAATCCTGAAACGTTc > 2:5226651/1‑150 (MQ=255) cATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTc < 1:672280/150‑1 (MQ=255) aatgaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCAATTTTTCCACTTGCAGCGAGTGTATGACACCCAAGAAATAAAGGGAAAATGTGTTATCAAAGGTCAATAATCCTGAAAACATCGCaa > 1:3516440/1‑150 (MQ=255) tgaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTTCCAGTTGCAGCGAGTGTAAGACAGCCTAGAATTCAAGGGACATGGTGTTGTCTAAGGTCAATAATCGTGAAAACTTAGCAAGc > 2:2807378/1‑150 (MQ=255) gaGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTGCCAGTTGCAGCGAGTGTATTACAGCCTAGAAATCAACGGAAATGGTGTTCTCTAAGGTCATTAATAGTGAAACGTTAGCAAGCg > 2:1608810/1‑150 (MQ=255) ggATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCAAATTTTCCACTTGCAGCGAGAGTAAGACACCCAAGAAAAAAACGGAAAAGGTGTTCACAAAGGTCAATAAACGAGAAACCGTCCCAAGCCTa > 2:7858579/1‑150 (MQ=255) aGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGcc < 2:3000654/150‑1 (MQ=255) atgaGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACg < 1:8382254/150‑1 (MQ=255) atgaGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTGCCAGTTGCAGCGAGTGTATTACAGCCAAGAATTCAAGGGAAAAGGTGGTGTCTAAGGTCATTAATAGTGAAACGTTAGCAAGCGTACAAGcccaaag > 1:712860/1‑146 (MQ=255) gaGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCATTTTTGCCAGTTGCAGCGCGTGTATGACAGCCTAGAATTCAACGGAAATGGTGTTCTCTCAGGTCATTAATCGTGAAACGTTCGCAACCGTACACCCCCTACGgc > 2:6716758/1‑150 (MQ=255) tgtTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACAGGCAGTTTTGCCCGTTGCAGCGAGTGTATGACAGCCGAGCATTCAAGGGAAATGGGGGTCTCGAAGGTCAATAATCGTGAAAACGTAGCAAGCGTACACGCCCAACCgcgcg > 2:6371456/1‑149 (MQ=255) aTGAGCGAATCAACGTTTCGTCGGGCTGAAACTTGCATTTTTGCAAGTTGCAGCGAGTTTATGACAGCCTAGAAATCAAGGGAAATGGTGTTCTAAAAGGTCATTAATACTGAAAAGTTCGCAATCGTAAACCCCCAGCGGCGCGAGTTg > 2:7562756/1‑150 (MQ=255) tGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTgg < 2:888077/150‑1 (MQ=255) aGCGAATCAACGTTTCGTCGGGCTGCAAAAGGCATTTTTTCCAGTTGGAGCGAGTGTATGACAGCCTAGAATTCAAGGGAACTGGGGTTATCGAAGGTCATTAAACGTGAAAAGTTAGCAAGCGTACACGCCCTAAGGCGCGATTTgggg > 2:3086764/1‑150 (MQ=255) aGCGAATCAACGTTTCGTCGGGCTGCAAAAGGCATTTTTGGCAGTTGCAGCGAGTGTATTACAGCCTAGAATTCAAGGGAAAATGTGTTGTGTAAGGTCAATAATAGTGAAAAGTTAGCAAGCGTACAAGCCCAACCGCGCGAGTTtggg > 1:5183207/1‑150 (MQ=255) gCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTTCAGCGAGTGTATGACCGCCGAGAAATCAAGGGAAATGGTGTTCTCTAAGGTCATTAATAGGGAAACGTTCGCAAGCGTACACGCCCAACGGCGCTATTTGGGGt > 1:9154926/1‑150 (MQ=255) gCGAATCAACGTTTCGTCGGGCTGCAACATGCATTTTTTCCAGTTTCAGCGAGTGTATTGCACCCTAGAAATAAAGGGAAATGGTGTTGTCTAAGGTCATTAATAGTGAAACGTTCGCAAGCGTAAACGCCCAACCGCGCTGTTTGGGGt > 2:2565901/1‑150 (MQ=255) tCAACGTTTCGTCGGGCTACAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATgg > 1:1592075/1‑150 (MQ=255) cGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCAt < 2:4564613/150‑1 (MQ=255) tcgtcgGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCt < 2:4639401/150‑1 (MQ=255) cgtcgGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTc < 1:1839671/150‑1 (MQ=255) ggCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCgtgt < 2:3576784/150‑1 (MQ=255) gCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGtt < 1:3181315/150‑1 (MQ=255) cTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTg < 1:4637740/150‑1 (MQ=255) tGCAACTGGCAAAAATGCCAGTTGAAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGTTCATTAATCGTGAAACTTTAGCAAGAGTACACGCCCTACGGCGCTATTTTGGTTGATGGCCATTGCTCCGTGTTGa > 1:8481077/1‑150 (MQ=255) gCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGaa < 1:554302/150‑1 (MQ=255) cAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAg < 1:9153813/150‑1 (MQ=255) aaCTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTggg > 2:9137313/1‑123 (MQ=255) aaCTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGt > 1:8124158/1‑150 (MQ=255) aaCTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGt < 1:7107621/150‑1 (MQ=255) aaCTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGt > 1:4272006/1‑150 (MQ=255) tGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACa > 2:3919467/1‑150 (MQ=255) tGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACa > 2:6808212/1‑150 (MQ=255) tGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACa > 2:1180536/1‑150 (MQ=255) tGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACa > 2:9031893/1‑150 (MQ=255) ggCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTcc < 2:1064848/136‑1 (MQ=255) cATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATg < 2:7641771/150‑1 (MQ=255) tttttGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATGGt < 2:2014201/150‑1 (MQ=255) tttttGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATGGt < 2:1338094/150‑1 (MQ=255) tttttGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATGGt > 2:8552709/1‑150 (MQ=255) | GCGCAGAGCCTGTTGCTGATGAACTTCCTGCCGGTGCAGTAAGAGGCCTCTGCCGCACGCCCTTTGCGAAATGCCCATACATGAATGAGGATTGAGTTGATGAGTGTTCATGAGCGAATCAACGTTTCGTCGGGCTGCAACTGGCATTTTTGCCAGTTGCAGCGAGTGTATGACAGCCTAGAATTCAAGGGAAATGGTGTTCTCTAAGGTCATTAATCGTGAAACGTTCGCAAGCGTACACGCCCTACGGCGCTATTTGGGGTGATGGCCATTGCTCCGTGTTGAAGTACAATGGT > NC_002947/3580247‑3580542 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |