| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,962,934 | G→C | 5.8% | intergenic (‑149/+115) | fliE ← / ← atoC | flagellar hook‑basal body complex protein FliE/two‑component system DNA‑binding transcriptional activator AtoC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,962,934 | 0 | G | C | 5.8% | 799.2 / 11.9 | 264 | intergenic (‑149/+115) | fliE/atoC | flagellar hook‑basal body complex protein FliE/two‑component system DNA‑binding transcriptional activator AtoC |
| Reads supporting (aligned to +/- strand): ref base G (105/140); new base C (15/3); total (121/143) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.02e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 267 total aligned reads displayed.
GACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGTCAAACCCG > NC_002947/4962786‑4963082 | cTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCGTGCGTCGCGAGATGGCCGCCGAGCgg > 1:8547087/1‑150 (MQ=255) ttCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGGCGTTGC‑TCGCGGTAGGGCCCCCGAGCCGc > 1:1728359/1‑150 (MQ=255) ttCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTTCGTCGCGATAGGGCCGCAGAGCGGc > 2:3870508/1‑150 (MQ=255) ctctctcCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGccc < 1:9061166/150‑1 (MQ=255) ctctctcCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCGTGCGTCGCGATAGGGGCGCAGAGCGGccc > 1:914610/1‑150 (MQ=255) tctctcCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGcccc > 2:3569223/1‑150 (MQ=255) tctcCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCGTGCGTCGCGATAGGGCCGCCGAGCGGCCCCgg > 2:602217/1‑150 (MQ=255) ctcCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGc < 2:2748447/150‑1 (MQ=255) tcCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCCCGATAGGGCCGCAGAGCGGCCCCGGCg > 2:3392121/1‑150 (MQ=255) tcCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCGTGCGTCGCGATATGGCCCCACAGCGGcccccccc > 1:8887377/1‑146 (MQ=255) tcCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCATGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCg > 2:6953467/1‑150 (MQ=255) cTGTGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGAt > 2:8389674/1‑150 (MQ=255) cTGCGGCCGCATTTTGGTGACAGTCCTGCGGCGAAGGACCTACCGACCGCACCCCCGGTGCCAGCCTTCGCAACTCCTGTCCCAGAGATCCCACCAGTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGAt < 2:6320756/150‑1 (MQ=25) gCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCATGCGTCGCGATAGGGCCCCACAGCGGCCCCCGccaact > 2:430594/1‑145 (MQ=255) cGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTACAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTgcg < 2:7204695/150‑1 (MQ=255) gaaTTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTgcgg < 1:6172604/148‑1 (MQ=255) cATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGGCGTGCGTGGCGCTAGGGCCGCACAGCGGCCCCCGCGCACTTTggggc > 1:8009810/1‑150 (MQ=255) aTTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTgcggcg > 1:2730204/1‑150 (MQ=255) tttttttGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCCGAGCGGCCCCCGCGATCTTTTcggcgg > 1:726905/1‑150 (MQ=255) ttttttgGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGcggcgg < 1:7517293/150‑1 (MQ=255) ttttttGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGa < 2:2975276/150‑1 (MQ=255) ttttttGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGa < 1:963768/150‑1 (MQ=255) tttttGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAg < 1:6627869/150‑1 (MQ=255) tttttGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAg < 1:1410939/150‑1 (MQ=255) tttGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCt < 1:76994/150‑1 (MQ=255) tttGACAGGCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACCCAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCt < 1:7646374/150‑1 (MQ=255) tGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCCGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGa > 2:7961899/1‑150 (MQ=255) tGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGa < 1:1030587/150‑1 (MQ=255) aGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCCATCTTTGCGGCGGAGCTGAacac > 2:7984249/1‑150 (MQ=255) tcttGCGGCGTATGACCTACCTAAAGCAACACAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGTTCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCt < 1:1713682/147‑1 (MQ=255) tCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGGCGTGCGGCGCGGTAGGGGCCCCCGGCGGCCCCCGCGCGCGTTGGGGCGGGGCGGAAGGcca > 1:1635591/1‑149 (MQ=255) aTGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTgg < 2:3021094/150‑1 (MQ=255) tGCGGCGAATGACCTACCTAACGCCACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTggg < 1:6109847/150‑1 (MQ=255) ggcgAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGCTAGGGCCCCAGAGCGGCCCCCGCGATCTTTGCGGCGGAGCTGAAGACCAGGGGcc > 1:4459911/1‑150 (MQ=255) aaTGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCGTGCGTCGCGCTAGGGGCCCAGAGCGGCCCCGGCGCGCGTTTGGGCGGGGCGGAAGACCAGGGGgcgcgt > 1:3311955/1‑148 (MQ=255) gACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTcgc < 1:5968987/150‑1 (MQ=255) ctacctaAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGCTAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGGGCTGAAGACCTGGGGCCGCTTCGCGcc > 2:1308846/1‑150 (MQ=255) ctacctaAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGGCGCGGTATGGCCGCAGAGCGGCCCCCGCGCGCTTTGCGGCGGAGCGGAAGACCAGGGGCCGCTTCGcccc > 2:5719304/1‑150 (MQ=255) acctaAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGGCGTGCGGCGCGCTAGGGGCGCCGAGCGGCCCCCGCGCACTATTCGGCGGAGCTGAAGAACAGGGGGCCCGGCGCGcccc > 1:7065959/1‑150 (MQ=255) cctaAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAg < 1:2503745/121‑1 (MQ=255) cctaAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCGTGCGTCGCGCTAGGGCCGCACAGCGGCCCCGGCGATATTTGCGGCGGAGCTGAATACCTGGGGCCGCGTCGCGccccc > 1:4519169/1‑149 (MQ=255) aaaGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTc < 1:7148514/150‑1 (MQ=255) aaGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCGTGCGTCGCGATAGGGCCGCAGAGCGGCCCCCGCGATCTTTTCGGCGGAGCGGAAGAACAGGGGCCGCGTAGCGCCCCAATcg > 2:2484664/1‑150 (MQ=38) caacaaAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGa < 1:3443798/150‑1 (MQ=255) caacaaAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGa > 2:7526639/1‑150 (MQ=255) aacaaAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCGTGCGTCGCGATAGGGCCGCAGAGCGGCCCCCGCGATCTTTGCGGCGGAGCTGAAGACCAGGGGCCGCGTCGCGCCCCAATCGCGac > 1:8335272/1‑150 (MQ=39) acaaAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGaca < 2:2963369/150‑1 (MQ=255) aaaGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGGCGTTCGTGGCGATATGGGCGCAGGGCGGCCCCGGGCCTCGTTTCGGCGGAGCTGAAGTCCGGGGGGCGCTTCGCGCCCCCATAGCGacacc > 1:4675268/1‑149 (MQ=255) aaGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAACGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACaa < 1:3074130/150‑1 (MQ=255) aGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAg > 2:5532221/1‑150 (MQ=255) cAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGGCGTGCGGCGCGGGAGGGCCGCCCAGCCGCCCCGGCGATCATTGGGGCGGGGCTGGAGACCAGGGGCCGCGTCGCGCCCCCGTCGCGGCCCAACGCCggt > 1:4436929/1‑148 (MQ=255) aGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATGGGGCCGCTCTGCGGccctatc > 2:8570704/1‑81 (MQ=37) ccTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCGTGCGTCGCGGTAGGGCCGCAGAGCGGCCCCGGCGATCATTTCGGCGGAGCTGAAGTCCAGGGGCCCCATAGCCCCCCAATAGCCAAACAACGCCggtacc > 1:739118/1‑145 (MQ=25) cTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCca < 2:705599/150‑1 (MQ=255) cTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCGTGCGGCGCGCAAGGGCCGCCGAGCGGCCCCCGCGATCAGTGCCGCGGGGCGGAAGCCCGGGGGCCCCGTCGCCCCCCCGTCGCGCCCCCACGCCGGTcccc > 2:1752625/1‑149 (MQ=255) ttCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCGTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCcac > 2:1506574/1‑150 (MQ=255) tCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCcaca < 2:1045588/150‑1 (MQ=255) tCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCcaca < 1:5180678/150‑1 (MQ=255) gCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACaga < 1:3517097/150‑1 (MQ=255) gCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACaga < 1:5532221/150‑1 (MQ=255) aaCTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCGTGCGTCGCGATAGGGCCGCCGAGCGGCCCCCGCGATCGTTGCGGCGGGGCGGAAGACCAGGGGCCGCGTCGCGCCCCCATCCCGACCCCAAGCCCGTCCCACACAgg > 1:1506291/1‑150 (MQ=255) aaCTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCGTGCGGCGCGAAAGGGCCCCCGAGCGGCCCCCGCGATCGTTGCGGCGGAGCTGGAGACCAGGGGCCGCGTCGCGCCCCCATCCCGACACAAGGCCCGTCCCCCCGAgg > 1:1506779/1‑150 (MQ=255) aCTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGt < 2:2338150/150‑1 (MQ=255) tCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTcc < 1:3463438/150‑1 (MQ=255) tCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCGTGCGTCGCGATAGGGCCCCACAGCGGCCCCGGCGATCGTTTCGGCGGAGCGGAAGACCAGGGGGCGCGTCGCGCCCCCATCGCGACACAAGGCCGGTCCCACAGAGGTcc > 2:1703650/1‑150 (MQ=255) aTTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCcgc < 1:4093601/150‑1 (MQ=255) ttCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCgcgc < 2:1824771/150‑1 (MQ=255) tCCCAGAGATCACACAATTCCTGCGGGAGC‑GGGCTTGCGTCGCGGTAGGGCCGCAGAGCGGCCCCGGCGATGTTTTGGGCGGCGCTGTATAACTGGGGGCGCTTAGCGCCCCCATCGCGGCACAAAGCCCTTCCCACAGAGGTCCGCGcc > 2:816102/1‑150 (MQ=25) ccAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTTCGTCGCGGAAGCGGCCCAGAGAGGCCCCGGCGATCTTTGCCGCGGAGCAGAAGACCACGGGCCGCGACGCCCCCCACTAGCGACACAAGGCCGTTCCCACACAGCTCCGCGcccg > 2:1267482/1‑148 (MQ=255) ccAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATATGGCCGCAGTGCGGGCCCGGCGGTCTTTTCGGCGGTGGTGAAGAACTGGGGGCGCTTGGCGCCCCATTCGCGACACAAGGGCGTTCCCACAGAGGTGCGCGCCAg > 2:4784845/1‑150 (MQ=255) cAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCCGCGATCTTTGCGGCGGTGCTGAAGACCTGGGGCCGCTTCGCGCCCCCTTCGCGACACCAGGCCGGTCCCACCGAGGTCCGCGCCAGt > 2:7322946/1‑150 (MQ=37) cAGAGATCACACAATTCCTGCGGGAGC‑GGCCGTGCGTCGCGATAGGGCCGCCGAGCGGCCCCGGCGATCGTTGCGGCGGGGCGGAAGACAGGGGGCCGCGTCGCGCCCCAATCGCGACCCAAGGCCGTTCCCCCAAAGGTCCGCGCCAgg > 2:8717484/1‑149 (MQ=37) agagATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGtt < 1:3569223/150‑1 (MQ=255) gaTCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCa < 1:2858332/150‑1 (MQ=255) gaTCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCa < 1:7961899/150‑1 (MQ=255) acaATTCCTGCGGGAGC‑GGCCGTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCCCTCTTTGCGGCGGAGCGGGAGACCTGGGGCCGCGGCGCGCCCCCATAGCGACACAAGGCCGTTCCCACACAGGTCCGCGCCCGGTGCAgatgat > 2:2780815/1‑150 (MQ=37) caATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGAtt < 2:5123072/150‑1 (MQ=255) caAGTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGAtt < 2:5426627/150‑1 (MQ=255) aaTTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGAttt < 2:3980359/150‑1 (MQ=255) aaTTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGAttt > 2:8191566/1‑150 (MQ=255) aaTTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGAttt < 1:8992557/150‑1 (MQ=255) ccggCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTGAGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCa < 2:7803876/147‑1 (MQ=255) ccTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCa < 2:1635591/150‑1 (MQ=255) ggCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGCCACACGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGt < 1:8322912/149‑1 (MQ=255) ggCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAAc < 1:5415744/150‑1 (MQ=255) ttGCGTCGCGTTAGGGCCGCAGAGCGGCCCCGGCGATCTTTTCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGc < 1:2438164/150‑1 (MQ=255) gCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTg < 2:505988/150‑1 (MQ=255) gCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTg < 1:5696806/150‑1 (MQ=255) gTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGc > 2:400995/1‑150 (MQ=255) tCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGcc > 2:90349/1‑150 (MQ=255) tCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGcc < 1:430594/150‑1 (MQ=255) tAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACg < 1:3802388/150‑1 (MQ=255) aGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGt > 2:253865/1‑150 (MQ=255) aGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGt > 1:5118352/1‑150 (MQ=255) ggCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCCGTCGCGACACACGGCCGGTCCCACAGAGGGCCGCGCCCCGTGCAGATGATTTGCCAGTCCGCCGAACAGGCTGGCCTCGACGGCa > 1:5722874/1‑150 (MQ=255) gCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGTCaa > 2:5560067/1‑150 (MQ=255) ccGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGTCTCGACGTCaaa < 1:5032642/150‑1 (MQ=255) ccGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGTCaaa < 2:4175172/150‑1 (MQ=255) ccGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGTCaaa < 1:1161261/150‑1 (MQ=255) cGCAGAGCGGCCCCGGCGATCTGTGCGGCGGAGCTGAAGACCTGGGGCCGCGTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCTCCAGTTGCAGATGATTTGCCAGTCAGCCGACCAGGCTGGCCTCGACGTCAAAc > 2:4521970/1‑150 (MQ=255) | GACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGC‑GGCCTTGCGTCGCGATAGGGCCGCAGAGCGGCCCCGGCGATCTTTGCGGCGGAGCTGAAGACCTGGGGCCGCTTCGCGCCCCATTCGCGACACAAGGCCGTTCCCACAGAGGTCCGCGCCAGTTGCAGATGATTTGCCAGTCAGCCGAACAGGCTGGCCTCGACGTCAAACCCG > NC_002947/4962786‑4963082 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |