| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,310,242 | T→A | 65.5% | noncoding (2318/2902 nt) | PP_23SG ← | 23S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,310,242 | 0 | T | A | 65.5% | ‑5.9 / 7.8 | 17 | noncoding (2318/2902 nt) | PP_23SG | 23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base T (2/4); new base A (7/4); total (9/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.35e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTGCTCGACGTGTTTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTACGACCGATTTCCGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTGGGAGGAGACCGCCCCAGTCAAACTACCCACCATACACTGTCCTCGATCCGGATAACGGACCTGAGTTAGAACCTCAAA > NC_002947/5310096‑5310384 | gatctctTGGGCGGTATCAGCCTGTTATCCCCGGAGTAGCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTGCTCGACGTGTTTGTCTCGCAGTCAAGCGCGCTTTTGCCTTta > 2:1919709/4‑150 (MQ=1) agacTGTTATCCCCGGAGTACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTGCTCGACGTGTTTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTACGACCGATTTc < 1:7651898/147‑1 (MQ=1) ggcgTACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCTGGACCACCGGATCACTATGACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGCAGGCTTATGCCATTGCACTCGACGAACGATTTCCGACCGTTCTGAgc < 2:8243483/147‑1 (MQ=0) ggcgTACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGCAGGCTTATGCCATTGCACTCGACGAACGATTTCCGACCGTTCt > 1:4385741/4‑146 (MQ=0) ggcgTACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGCAGGCTTATGCCATTGCACTCGACGAACGATTTCCGACCGTTCt < 2:4385741/143‑1 (MQ=0) aggaCCTTTTAGCCGTTGCGCGACGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTGCTCGACGTGTTTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTACGACCGATTTCCGACCGGTCTGAgcgc < 2:5133511/147‑1 (MQ=0) gaccGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTGCTCGACGTGTTTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATAATCTACGTCCGATTTCCGACCGGTCTGAGCGCTCCTTCGTACTCCTCCg > 2:8216657/4‑150 (MQ=0) ccgtCCAGACAGCACCCCCGGATCACGAAGACCTACTTTCGTACCGGCTCGACGTGTATGTCTCGCAGTCAAGCGCGCGTTTGCCTTCATACTCTCCGACCGATTTCCGACCGGTCTGAGCGCACCTTCGTACTCCTCCGGTACTCttgg < 2:3505395/147‑3 (MQ=1) tatgACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGCAGGCTTATGCCATTGCACTCGACGAACGATTTCCGACCGTTCTGAGCCTACCATCGCGCGCCTCCGTTACTCTTTAGGAGGCGACCGCCCCAGTCAAACTAc < 1:1892727/147‑1 (MQ=0) tatgACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGCAGGCTTATGCCATTGCACTCGACGAACGATTTCCGACCGTTCTGAGCCTACCATCGCGCGCCTCCGTTACTCTTTAGGAGGCGACCGCCCCAGTCAAACTAc < 1:3003291/147‑1 (MQ=0) ccgaCTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGCAGGCTTATGCCATTGCACTCGACGAACGATTTCCGACCGTTCTGAGCCTACCATCGCGCGCCTCCGTTACTCTTTAGGAGGCGACCGCCCCAGTCAAACTACccacc > 2:2530519/4‑150 (MQ=0) ccgaCTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGCAGGCTTATGCCATTGCACTCGACGAACGATTTCCGACCGTTCTGAGCCTACCATCGCGCGCCTCCGTTACTCTTTAGGAGGCGACCGCCCCAGTCAAACTACccacc > 1:6293344/4‑150 (MQ=0) ccgaCTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGCAGGCTTATGCCATTGCACTCGACGAACGATTTCCGACCGTTCTGAGCCTACCATCGCGCGCCTCCGTTACTCTTTAGGAGGCGACCGCCCCAGTCAAACTACccacc > 1:3207860/4‑150 (MQ=0) ccgaCTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGCAGGCTTATGCCATTGCACTCGACGAACGATTTCCGACCGTTCTGAGCCTACCATCGCGCGCCTCCGTTACTCTTTAGGAGGCGACCGCCCCAGTCAAACTACccacc > 1:1111024/4‑150 (MQ=0) ccgaCTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGCAGGCTTATGCCATTGCACTCGACGAACGATTTCCGACCGTTCTGAGCCTACCATCGCGCGCCTCCGTTACTCTTTAGGAGGCGACCGCCCCAGTCAAACTACccacc > 2:827206/4‑150 (MQ=0) ccgaCTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGCAGGCTTATGCCATTGCACTCGACGAACGATTTCCGACCGTTCTGAGCCTACCATCGCGCGCCTCCGTTACTCTTTAGGAGGCGACCGCCCCAGTCAAACTACccacc > 2:833160/4‑150 (MQ=0) ttgtGCCTTTATACTCTTCGACCGATTTCCGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTGGGAGGAGACCGCCCCAGTCAAACTACCCACCATACACTGTCCTCGATCCGGATAACGGACCTGAGTTAGAACCTCaaa < 1:7646003/147‑1 (MQ=1) | GAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTGCTCGACGTGTTTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTACGACCGATTTCCGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTGGGAGGAGACCGCCCCAGTCAAACTACCCACCATACACTGTCCTCGATCCGGATAACGGACCTGAGTTAGAACCTCAAA > NC_002947/5310096‑5310384 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |