| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,312,253 | A→C | 81.8% | noncoding (307/2902 nt) | PP_23SG ← | 23S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,312,253 | 0 | A | C | 81.8% | ‑6.2 / 3.4 | 21 | noncoding (307/2902 nt) | PP_23SG | 23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (2/2); new base C (7/10); total (9/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACTGGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCGATTTCATTGACAAGAGATTTTCGTGTACGGGGCTATCACCCACTATGGCCGCACTTTCCAGAGCGTTCCACTAATCTCAAATCAACTTAAGGGCTGGTCCCCGTTCGCTCGCCACTACTAAGGGAATCTCGGTTGATTTCTTTTCCTCAGGGTACTTAGATGTTTCAGTTCCCCTGGTTCGCCTCTTGCACCTA > NC_002947/5312110‑5312394 | acgggTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCGATTTCATTGACAAGAGATTTTCGTGTACGGGGCTATCACCCACTATGGCCGCACTTTcc < 1:5041847/147‑1 (MQ=1) aggagtaTTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCATACTCGATTTCATTGACAAGAGATTTTCGTGTACGGGGCTATCACCCACGATGGCCGCACTTTCCAGAGCGATCCACTAATCTCaaa > 2:8002397/4‑150 (MQ=0) gaggaTTTAGCCTTGGAGGATGGTCCCCCCATATGCAGACACAGTGTCTCGTGCTCCGTCCTACTCGATTTCATTGACAAGAGATTTTCGTGTACGGGGCGATCACCCACGATGGCCGCACGTTCCAGAGCGTTCCCCTAAACTCACATc > 2:8576533/5‑150 (MQ=1) catgttgcGTGTACGGGGCTATCACCCACTCTAGCCAACCTTTCCAGATTGTTCCACTTTACTCACATAAGCCACTGGCCTGGTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCGTTTGATGTCCTTTCCTCTGGGTACTTAGATGtt > 2:8654356/8‑150 (MQ=0) atgttgcGTGTACGGGGCTATCACCCACTCTAGCCAACCTTTCCAGATTGTTCCACTTTACTCACATAAGCCACTGGCCTGGTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCGTTTGATGTCCTTTCCTCTGGGTACTTAGATGttt < 1:4086757/144‑1 (MQ=0) atgttgcGTGTACGGGGCTATCACCCACTCTAGCCAACCTTTCCAGATTGTTCCACTTTACTCACATAAGCCACTGGCCTGGTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCGTTTGATGTCCTTTCCTCTGGGTACTTAGATGttt < 2:5848815/144‑1 (MQ=0) atgttgcGTGTACGGGGCTATCACCCACTCTAGCCAACCTTTCCAGATTGTTCCACTTTACTCACATAAGCCACTGGCCTGGTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCGTTTGATGTCCTTTCCTCTGGGTACTTAGATGttt > 1:4634318/7‑150 (MQ=0) atgttgcGTGTACGGGGCTATCACCCACTCTAGCCAACCTTTCCAGATTGTTCCACTTTACTCACATAAGCCACTGGCCTGGTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCGTTTGATGTCCTTTCCTCTGGGTACTTAGATGttt < 2:2820558/144‑1 (MQ=0) atgttgcGTGTACGGGGCTATCACCCACTCTAGCCAACCTTTCCAGATTGTTCCACTTTACTCACATAAGCCACTGGCCTGGTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCGTTTGATGTCCTTTCCTCTGGGTACTTAGATGttt < 1:1296412/144‑1 (MQ=0) tgttgcGTGTACGGGGCTATCACCCACTCTAGCCAACCTTTCCAGATTGTTCCACTTTACTCACATAAGCCACTGGCCTGGTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCGTTTGATGTCCTTTCCTCTGGGTACTTAGATGTTTc > 1:5421282/6‑150 (MQ=0) gttgcGTGTACGGGGCTATCACCCACTCTAGCCAACCTTTCCAGATTGTTCCACTTTACTCACATAAGCCACTGGCCTGGTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCGTTTGATGTCCTTTCCTCTGGGTACTTAGATGTTTCa < 2:1783985/146‑1 (MQ=0) gttgcGTGTACGGGGCTATCACCCACTCTAGCCAACCTTTCCAGATTGTTCCACTTTACTCACATAAGCCACTGGCCTGGTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCGTTTGATGTCCTTTCCTCTGGGTACTTAGATGTTTCa < 2:1794070/146‑1 (MQ=0) gttgcGTGTACGGGGCTATCACCCACTCTAGCCAACCTTTCCAGATTGTTCCACTTTACTCACATAAGCCACTGGCCTGGTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCGTTTGATGTCCTTTCCTCTGGGTACTTAGATGTTTCa < 1:2419898/146‑1 (MQ=0) gttgcGTGTACGGGGCTATCACCCACTCTAGCCAACCTTTCCAGATTGTTCCACTTTACTCACATAAGCCACTGGCCTGGTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCGTTTCATGTCCTTTCCTCTGGGTACTTAGATGTTTCa < 1:4265159/146‑1 (MQ=0) ttgcGTGTACGGGGCTATCACCCACTCTAGCCAACCTTTCCAGATTGTTCCACTTTACTCACATAAGCCACTGGCCTGGTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCGTTTGATGTCCTTTCCTCTGGGTACTTAGATGTTTCAg > 2:5143037/4‑150 (MQ=0) ttgcGTGTACGGGGCTATCACCCACTCTAGCCAACCTTTCCAGATTGTTCCACTTTACTCACATAAGCCACTGGCCTGGTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCGTTTGATGTCCTTTCCTCTGGGTACTTAGATGTTTCAg > 2:569323/4‑150 (MQ=0) ttgcGTGTACGGGGCTATCACCCACTCTAGCCAACCTTTCCAGATTGTTCCACTTTACTCACATAAGCCACTGGCCTGGTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCGTTTGATGTCCTTTCCTCTGGGTACTTAGATGTTTCAg < 1:4390800/147‑1 (MQ=0) ttgcGTGTACGGGGCTATCACCCACTCTAGCCAACCTTTCCAGATTGTTCCACTTTACTCACATAAGCCACTGGCCTGGTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCGTTTGATGTCCTTTCCTCTGGGTACTTAGATGTTTCAg > 2:7069030/4‑150 (MQ=0) ttgcGTGTACGGGGCTATCACCCACTCTAGCCAACCTTTCCAGATTGTTCCACTTTACTCACATAAGCCACTGGCCTGGTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCGTTTGATGTCCTTTCCTCTGGGTACTTAGATGTTTCAg > 1:2324537/4‑150 (MQ=0) ggtcTATAACCCACTCTAGCCAACCTTTCCAGATTGTTCCACTTTACTCACATAAGCCACTGGCCTGTTCCGCGTTCGCTCGCCACTACTAGCGGAGTCTCGTTTGATGTCCTTTCCTCTGGGTACTTAGATGTTTCAGTTCACCAGGtt < 2:1337983/147‑1 (MQ=0) atcgCCGCACTTTCCAGAGCGTTCCACTAATCTCAAAACAACTTAAGGGCTCGTCCCCGTTCGCTCGCCACTACTAAGCGAATCTCGGTTGATTTCTTTACCTCAGGGTACTTAGATGTTTCAGTTCCCCTGCTTCGCCACTTGCACCTa < 2:6701299/147‑1 (MQ=1) | ACTGGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCGATTTCATTGACAAGAGATTTTCGTGTACGGGGCTATCACCCACTATGGCCGCACTTTCCAGAGCGTTCCACTAATCTCAAATCAACTTAAGGGCTGGTCCCCGTTCGCTCGCCACTACTAAGGGAATCTCGGTTGATTTCTTTTCCTCAGGGTACTTAGATGTTTCAGTTCCCCTGGTTCGCCTCTTGCACCTA > NC_002947/5312110‑5312394 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |