| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 353,088 | A→C | 8.0% | intergenic (+52/+66) | hisF → / ← cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 353,088 | 0 | A | C | 8.0% | 541.0 / 4.2 | 224 | intergenic (+52/+66) | hisF/cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| Reads supporting (aligned to +/- strand): ref base A (105/93); new base C (13/11); total (118/106) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 232 total aligned reads displayed.
CCAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCAC > NC_002947/352939‑353237 | ccAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCcaca < 2:7608196/150‑1 (MQ=255) cAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCCCAg > 1:8218152/1‑150 (MQ=255) cAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAg > 1:3605307/1‑150 (MQ=255) gcgcGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGt < 2:405259/150‑1 (MQ=255) gTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCt > 1:6441245/1‑150 (MQ=255) gCTGGCGGCCAGCATCTTCCACTTGGGCGAGTACACAGTGCCGGAGGCCAAGGCCGACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTga < 2:7486209/150‑1 (MQ=255) cTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTgag < 1:102478/150‑1 (MQ=255) ggcggcCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑At > 2:6438281/1‑150 (MQ=255) gcCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATctct < 2:671776/150‑1 (MQ=255) cAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATctct < 1:4116920/148‑1 (MQ=255) aGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCtgtg < 2:8047921/150‑1 (MQ=255) aTCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGa < 1:6438281/150‑1 (MQ=255) tCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAg > 1:8096565/1‑150 (MQ=255) cTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGc > 2:3759929/1‑150 (MQ=255) cTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGc < 1:6250839/150‑1 (MQ=255) ttCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCCCGCCCGCTCCCACCGGGGTGCGGGG‑GTCTCGGTGGGGGCg > 1:7199678/1‑150 (MQ=38) tCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCgg < 2:8878279/150‑1 (MQ=255) tCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCgg < 2:6441245/150‑1 (MQ=255) tCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCgg < 1:5908294/150‑1 (MQ=255) tCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCgg < 2:4854536/150‑1 (MQ=255) tCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCgg < 2:4794146/150‑1 (MQ=255) ccACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCggg < 1:6662542/150‑1 (MQ=255) caaCTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGGCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCggg < 1:2271412/148‑1 (MQ=255) cACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGc < 1:7288185/150‑1 (MQ=255) cACTTGGGCGAGTACACCGTGCCGGAGGCCAAGGCCTACAGGGCTTCGCGCGGGATCGTCGTTCGCGGATCCAGGGACCGGGGCTGCTTTGCAGCCCGTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCGCGGTGGGAGCGGGc < 2:8527519/150‑1 (MQ=38) cTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGGTCGCTGATCCATTGACCGGGGCTGCTTGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGt < 2:1473681/150‑1 (MQ=255) tttGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACCGGTTTGCGGAG‑ATCTCTGTGGGAGCGGGCGTg > 2:3707879/1‑150 (MQ=255) tttGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTg > 2:6113334/1‑150 (MQ=255) tttGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCGGAG‑ATCTCTGTGGGAGCGGGCGTg > 1:9062291/1‑150 (MQ=255) gCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCcg < 2:8218992/150‑1 (MQ=255) gAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCCCGCCCGCTCCCCCCGGGTTGCTGAG‑ATCTCTGGGGGCGCGGGCGGGCCcgcg > 2:3244166/1‑150 (MQ=39) gAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCcgcg > 2:6667812/1‑150 (MQ=255) cacaGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGGG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAggg > 2:1066511/1‑150 (MQ=255) acaGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGc < 2:4797418/150‑1 (MQ=255) tGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCcgcg > 2:8742085/1‑150 (MQ=255) tGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCcgcg > 2:4136235/1‑150 (MQ=255) ccGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGGCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGAGAT‑CTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCaaa < 2:7038401/150‑1 (MQ=17) cGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCGCGCCCCCGCCCCCACGTTTGGTGTG‑ATCTATGTGGGGGCGGGGGTGCCCGCGAAGGGCCCCGCAg > 1:3077430/1‑150 (MQ=255) cGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGGTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAg > 2:8269078/1‑150 (MQ=255) ggAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGc > 2:9059562/1‑150 (MQ=255) gAGGCCAAGGCCTACCTGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCg < 2:6080370/150‑1 (MQ=255) cAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCCCGCCCGCTCCCACCGGGTTGCTGGG‑AGCTCTGTGGGAGCGGGCGTGCCCGCGCAGGGCCGCGACGCGGcccc > 1:5758750/1‑150 (MQ=38) cAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCCCGCCCCCGCCCACACGGTTGCGGAG‑ATGTAGGTGGGAGCGGGCGTGCCCCCCAAGGGCCCCGCAGCGGcccc > 1:8463788/1‑150 (MQ=255) cAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGcccc > 2:4559768/1‑150 (MQ=255) cAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCCCGAAGGGCCGCGAAGCGGcccc > 1:695241/1‑150 (MQ=255) cAAGGCCTACATGGCTTCGCGCGGGATCGTCATTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCGCTGTGGGAGCGGGCGGGCCCGCGAAGGGCCGCGAAGCGGcccc > 1:6590351/1‑150 (MQ=255) aGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGGGGGGGTGCCCGCGAAGGGCCGCGAAGCGGCCCCaa < 2:7713044/150‑1 (MQ=255) gCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCCCTCCCACAGGTTTGCTGAG‑ATCTCGGTGGGAGCGGGCGGGCCCGCGAAGGGCCCCGAAGCCGCCCCaaat > 2:858802/1‑148 (MQ=38) cTACATGGCTTAGCGCGGGATCGTCGTTCGCTGATCCAATGACCGGGGCTGCTTTGCAGCCCATCGCGGGCACCCCCCCGCCCACAGGGTTTCTGAG‑ATCTAGGTGGGAGCGGGCGTGCCCCCCAGGGGCCGCGAACCCGCCCCAAATga > 2:3946407/1‑149 (MQ=255) ctgggCTTCGCGCGGGATCGTGGTTCGGTGAGCCATTGACCGGGGCGGCTTTGCCGCCCTTCGCGGGCACGCCCGCTCCCACCGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTc < 1:8829046/147‑1 (MQ=38) ggCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACCCCCCCGCCCCCACGGGGGGGGTG‑ATGTGTGGGGGGGCGGGCGGGCCCGCGCCGGGGCGCGGCGCGGCCCCCCTTGCGGCAAc > 1:255772/1‑150 (MQ=255) ttCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGc > 1:8953567/1‑84 (MQ=255) ttCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGc < 2:8953567/84‑1 (MQ=255) ttCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCGACCCCCCGGTGGCGGTG‑ATCGCTGTGGGGGCGGGCGGGGCCGCCAAGGGCCGCGCAGCGGCCCCCATTTCGTAAACCgg > 1:4238342/1‑149 (MQ=19) ttCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCAGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGt > 2:8549902/1‑150 (MQ=255) ccgGGATCGTCGTTCGCTGATCCATTCACCGGGGCTGCTTTGCACCCCTTCGCGGGCACGCCCGCACCCACAGTTTTCCTGAG‑ATCTCTGTGGGAGCGGGCGTCCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTc < 1:2897683/149‑1 (MQ=38) cgtcgtTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTGGGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGa < 1:586614/150‑1 (MQ=255) tcgtTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGagc > 2:2849219/1‑150 (MQ=255) cgtTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGagca < 1:2060876/150‑1 (MQ=255) cgtTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGagca < 1:6005029/150‑1 (MQ=255) cgtTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGagca < 2:2067448/150‑1 (MQ=255) gtTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACCGCGGGGCTGCG‑CTCGCGGGGGGCGCGGGCGTGCCCGCGCAGGGCCGCGAAGCGGCCCCCATTGCGTCAACCGGGGTTCGTGCCGagcag > 2:5643839/1‑150 (MQ=25) gtTCGCTGATCCATTGACCGGGGCTGCTTTGCACCCCTTCGCGGGCACGCCCGCTCCCACAGGATTGCAGAC‑ATCTCTGTGGGAGCGGGCGAGCCCGCGAAAGGCCGCGAACCGCCCCCAATTGCTTCAACCCAGGTTCAAGCCGagcac > 2:5643527/1‑149 (MQ=25) ttCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGagcagc < 2:7981612/150‑1 (MQ=255) ttCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGagcagc > 2:2243173/1‑150 (MQ=255) cGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACCGGTTTGCTGAG‑ATCTCTGTGGGAGGGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAgcgc < 2:5677660/150‑1 (MQ=255) cATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTaaa < 2:5666078/150‑1 (MQ=255) aTTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAg > 1:7492372/1‑150 (MQ=255) aTTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAg > 2:5906062/1‑150 (MQ=255) ttGACGGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGTTTTGCTGAG‑ATATCTGTGGGAGGGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGc < 1:5718621/150‑1 (MQ=255) ccgcgaagggCTGCAAAGCAGCCCTTCGCGGGCACGCCCCCGCCCACAGGTTTGCGTAG‑TAGTCTGTGGGGGCGGGCCTGCCCCCGAAGGGCCCCGAAGCGGCCCCAAATTCTTAAACCGGGGTGATTGCCCCGCCGCGCGTGGTAAAGc > 1:117180/8‑150 (MQ=255) gACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATGACTGGGGGAGCGGGCGTGCCCGCGAAGGGCCGCGCTTCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCtg > 1:6810193/1‑149 (MQ=38) cccGGGGGTGCTTGGCCGCCCTTCGCGGGCCCCCCCGCCCCCCCTGGTTTGCGGAG‑ACCGCGGGGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCg < 1:4762279/149‑1 (MQ=37) aCCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCg < 1:9059562/150‑1 (MQ=255) aCCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCg > 2:4350556/1‑150 (MQ=255) gctgctTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATcc < 2:7199678/150‑1 (MQ=255) ctgctTTCCCGCCCTTCGCGGTCACGCCCTCTCCAAACGGTTTGCTGAG‑ATCGCTGTGGTCGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATccc < 1:324708/150‑1 (MQ=38) ctTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGa < 1:2871159/150‑1 (MQ=255) ctTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGa < 2:7476739/150‑1 (MQ=255) cgttGCAGCCCTTCGCGGGCACGCCCGCTCCCACCGGTTTGCTGAG‑ATCTCGGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGa < 1:6762522/148‑1 (MQ=255) tttGCAGCCCTTCGCGGGCACGCCCCCTACCACACGGTTGCTGAG‑ATCTCGGTGGGAGCGGGCGGGCCCGCGAAGGGCCGCGCAGCGGCCCCCCTTGCGGCAACCGTGGTTCGTTCCGGGCCGCGCGGGGTAAAGCGCGGTGTCCCCGAg > 2:78378/1‑150 (MQ=255) gCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATccc < 2:3588203/150‑1 (MQ=255) ctgcgcgGGCACGCCCGCCCCCACCGGTTTGCTGAG‑AGCTCGGTGGGAGCGGGCGGGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCccac < 1:4682731/147‑1 (MQ=39) ttCGCGGGCACGCCCGCTCCCACAGGGTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCccacc > 1:2198433/1‑150 (MQ=255) gcgGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCaccacc > 1:4514372/1‑150 (MQ=255) gcgGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCaccacc < 1:7376030/150‑1 (MQ=255) ggCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTg < 1:3707879/150‑1 (MQ=255) ggCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTg < 2:4514386/150‑1 (MQ=255) cACGCCCGCTCCCACCGGTTTGCTGAG‑ATCTGTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTc < 2:6167285/150‑1 (MQ=255) cACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTc < 2:8096565/150‑1 (MQ=255) aCGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCg < 2:2138992/150‑1 (MQ=255) cGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATc > 2:2970120/1‑150 (MQ=255) gCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATcc > 1:866925/1‑150 (MQ=255) tCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTg > 2:6571908/1‑150 (MQ=255) ccACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCTCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGACGAGCAGCGCGTGGTAATGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTgct > 2:11448/1‑149 (MQ=255) ccACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTgca > 2:7479199/1‑150 (MQ=255) cacaGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTCTCCTgcag > 2:5042480/1‑150 (MQ=255) acaGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCATgcagc > 2:3025043/1‑150 (MQ=255) aGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCAc > 1:5394671/1‑150 (MQ=255) aGGTTTGCTGAG‑AACTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGcaccac < 1:2077326/150‑1 (MQ=255) | CCAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCAC > NC_002947/352939‑353237 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |