| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 353,105 | T→G | 6.1% | intergenic (+69/+49) | hisF → / ← cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 353,105 | 0 | T | G | 6.1% | 624.8 / 2.3 | 235 | intergenic (+69/+49) | hisF/cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| Reads supporting (aligned to +/- strand): ref base T (120/93); new base G (8/12); total (130/105) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.69e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 251 total aligned reads displayed.
GCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTT > NC_002947/352956‑353254 | aGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCtgtg < 2:8047921/150‑1 (MQ=255) gCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTgg < 1:5515544/150‑1 (MQ=255) gCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTgg < 1:2208234/150‑1 (MQ=255) gCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTgg < 1:2859159/150‑1 (MQ=255) cATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTggg > 2:3391668/1‑150 (MQ=255) aTCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGa < 1:6439449/150‑1 (MQ=255) cTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGc < 1:6250839/150‑1 (MQ=255) ttCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCg > 2:8793207/1‑150 (MQ=255) tCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCgg < 2:6441256/150‑1 (MQ=255) tCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCgg < 1:5908294/150‑1 (MQ=255) tCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCgg < 2:6264179/150‑1 (MQ=255) ccACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCggg < 1:6662542/150‑1 (MQ=255) cACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGc < 1:7288185/150‑1 (MQ=255) tttGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTg > 2:6113334/1‑150 (MQ=255) tttGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTg > 1:9063286/1‑150 (MQ=255) tttGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTg > 2:3708062/1‑150 (MQ=255) acacAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCGGCTCCATTGACCGGGGCTGCTTGGCAGCCCTTCGCGGGCACGCCCGCTCCCCCC‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAgg < 2:8233853/150‑1 (MQ=39) acaGTGCGGGTGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACGGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGACCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGc < 2:4797031/150‑1 (MQ=255) acaGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGc > 2:7376031/1‑150 (MQ=255) tGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCcgcg > 2:4136235/1‑150 (MQ=255) tGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCcgcg > 2:8742085/1‑150 (MQ=255) ccGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGaa > 2:3777872/1‑150 (MQ=255) ggCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCACCCACA‑GGTTTGCGGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGc > 1:4960106/1‑150 (MQ=255) ccAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCCGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCACTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAAAGCGGccc < 2:6629571/150‑1 (MQ=255) ccAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACCCCCCCACCCACA‑CGGTTGCGTAGTTATCTGTGGGTGCGGGCGTGCCCGCGAAGGGCCCCGCAGCGGccc > 1:4130980/1‑150 (MQ=255) cAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCCCGAAGGGCCGCGAAGCGGcccc > 1:695241/1‑150 (MQ=255) cAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCCCGCCCCCA‑GGGTTGCTGAGATAACTGTGGGAGCGGGCGAGCCCCCGAAAGGCCCCCCAGCCGcccc > 1:5758855/1‑150 (MQ=37) cTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACCCCCCCTACCACA‑GGTTTTCTGAGATCTCTGTGGGGTCGGGCGTGCCCGCGAAGGGCCCCGAAGCGGCCCCAAATGc > 2:8550713/1‑150 (MQ=38) cATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGGACGCCCCCTCCCACACGGTTTG‑TGTTATTAATGTGGGAGCGGGGGTGGCCGCCAATGGGCGCGAAGCGGGCCCaaattatta > 1:2348683/1‑143 (MQ=21) ggCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCtcccac > 2:6672051/1‑145 (MQ=255) ggCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGAGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAAATGATTAAAc > 2:7926650/1‑150 (MQ=255) ggCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACCCCCCCGCCCCCA‑CGGGGGGGGTGATGTGTGGGGGGGCGGGCGGGCCCGCGCCGGGGCGCGGCGCGGCCCCCCTTGCGGCAAc > 1:255772/1‑150 (MQ=255) gCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAAcc < 2:4542140/150‑1 (MQ=255) ttCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGGTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGt > 2:8548965/1‑150 (MQ=255) ttCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCGACCCCC‑CGGTGGCGGTGATCGCTGTGGGGGCGGGCGGGGCCGCCAAGGGCCGCGCAGCGGCCCCCATTTCGTAAACCgg > 1:4238342/1‑149 (MQ=19) ggATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTg < 2:1096964/150‑1 (MQ=255) ggATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATATCGGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTg < 2:3240727/150‑1 (MQ=255) gATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCCCGCCCGCTCCCACC‑GGGTTGCGGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGACGCGGCCCCCAATGCTTCAACCCTGGTTCGTGc > 1:2138992/1‑150 (MQ=38) tcgtcgTTCGCTGATCCATTGACCGGGCCTCCTTTCCAGCCCTGCCCGGGCACCCCCCCGCCCCCA‑GGGTGGCTGAGAGCGCGGGGGGAGCGGGCGGCCCCCCCCAGGGCCGCCAACCGGCCCCCATGGCTACAACCGTGGTACTTGCCg > 2:8985540/1‑150 (MQ=255) cgtcgtTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTGGGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGa < 1:586614/150‑1 (MQ=255) cgtTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGagca < 1:6005029/150‑1 (MQ=255) cgtTCGCTGATCCATTGACCGGGGCGGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCGGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGagca < 1:2060884/150‑1 (MQ=255) gtTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCACTGTGGGAGCGGGCCTGCCCGCCAAGGGCCGCGAAGCGGCCCCAATAGCTACAACCGTGGTTCTTGCCGagcag > 2:5643619/1‑150 (MQ=38) gtTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGGTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGagcag > 2:2060060/1‑150 (MQ=255) ttCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGagcagc > 2:2243173/1‑150 (MQ=255) cATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTaaa < 2:5666109/150‑1 (MQ=255) cATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCGGGGGGAGCGGGCGGGCCCGCGAAGGGCCGCGAAGCGGCCCCACTTGCGTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTaaa < 2:7776267/150‑1 (MQ=38) aTTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAg > 1:7492372/1‑150 (MQ=255) ttGACGGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GTTTTGCTGAGATATCTGTGGGAGGGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGc < 1:5718621/150‑1 (MQ=255) ccgcgaagggCTGCAAAGCAGCCCTTCGCGGGCACGCCCCCGCCCACA‑GGTTTGCGTAGTAGTCTGTGGGGGCGGGCCTGCCCCCGAAGGGCCCCGAAGCGGCCCCAAATTCTTAAACCGGGGTGATTGCCCCGCCGCGCGTGGTAAAGc > 1:117180/8‑150 (MQ=255) gACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATGACTGGGGGAGCGGGCGTGCCCGCGAAGGGCCGCGCTTCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCtg > 1:6810193/1‑149 (MQ=38) attggggCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCgg > 1:6398327/4‑72 (MQ=17) aCCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCg < 1:9059562/150‑1 (MQ=255) aCCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCg > 2:4350556/1‑150 (MQ=255) ggCTGCTTTGCAGCCCTTCGCGGGCACGCCCCCTCCCACC‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATc > 2:6939983/1‑150 (MQ=255) gctgctTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATcc < 1:8920626/150‑1 (MQ=255) gctgctTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATcc < 2:7199678/150‑1 (MQ=255) gctgctTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATcc < 2:5807254/150‑1 (MQ=255) ctgctTTCCCGCCCTTCGCGGTCACGCCCTCTCCAAAC‑GGTTTGCTGAGATCGCTGTGGTCGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATccc < 1:324708/150‑1 (MQ=38) tgctTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATcccc > 2:7586937/1‑150 (MQ=255) tgctTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATcccc < 2:4811527/150‑1 (MQ=255) ctTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGa < 2:8218152/150‑1 (MQ=255) ctTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGa < 2:3605307/150‑1 (MQ=255) cgttGCAGCCCTTCGCGGGCACGCCCGCTCCCACC‑GGTTTGCTGAGATCTCGGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGa < 1:6762522/148‑1 (MQ=255) cAGCCCTTCGCGGGCACGCCCCCTCCCACA‑GGGTTGCGGGGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGCAGCGGCCCCCAATTCTTCAAACCTGGTTCTTTCCGCGCAGCGCGTGGGAAAGCTCGGTATCCCCCAGTAta > 1:2885643/1‑149 (MQ=25) ctgcgcgGGCACGCCCGCCCCCACC‑GGTTTGCTGAGAGCTCGGTGGGAGCGGGCGGGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCccac < 1:4682731/147‑1 (MQ=39) gcgGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCaccacc > 1:4514372/1‑150 (MQ=255) gcgGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCaccacc < 1:7376030/150‑1 (MQ=255) gggCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCt > 2:1415417/1‑150 (MQ=255) ggCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTg < 1:3707879/150‑1 (MQ=255) cACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTc < 2:8096565/150‑1 (MQ=255) cACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTc > 2:8523814/1‑150 (MQ=255) aCGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCg < 2:2138992/150‑1 (MQ=255) cGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATc > 2:2970120/1‑150 (MQ=255) cGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATc > 2:5664322/1‑150 (MQ=255) gCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATcc > 1:866925/1‑150 (MQ=255) tCCCACC‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTg < 1:707281/150‑1 (MQ=255) ccACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTgca > 2:4713932/1‑150 (MQ=255) ccACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTgca > 1:3109875/1‑150 (MQ=255) ccACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTgca > 2:7479199/1‑150 (MQ=255) caca‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTCTCCTgcag > 2:5042480/1‑150 (MQ=255) gTTGGCTGAGATCCCGGTGCGAGCCGGCGCGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCCTCAACCGCGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCa < 1:1022820/150‑1 (MQ=255) tGCTGAGATCTCTGTGGGATAGGCCGAGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTTCTTCAACCGTGGAACTTTACGACCAGCGCGTGGTAAAGCTCTGTATCCCCGAGTATCCCAACCACCCTGTCGATATCCTGCAGCACAAGCt > 2:2189493/1‑150 (MQ=255) gCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCtt < 1:7566333/150‑1 (MQ=255) cTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCttg > 2:2657750/1‑150 (MQ=255) cTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCttg > 1:8282567/1‑150 (MQ=255) tGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCttgt > 2:5300165/1‑150 (MQ=255) tGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCttgt > 2:3856213/1‑150 (MQ=255) tGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCttgt > 2:603859/1‑150 (MQ=255) agaTCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCttgttg > 2:8589499/1‑150 (MQ=255) gaTCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGc > 1:7811471/1‑150 (MQ=255) aTCTCGGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGcc < 1:5116821/150‑1 (MQ=255) tctcTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCg < 1:8742085/150‑1 (MQ=255) tctcTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCg > 1:7636223/1‑150 (MQ=255) tctcTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCg > 2:6075909/1‑150 (MQ=255) tctGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGt > 1:8167199/1‑150 (MQ=255) ctGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCACCCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGtt < 2:2797227/150‑1 (MQ=255) ctGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGtt > 2:1014018/1‑150 (MQ=255) ctGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGtt > 1:2260392/1‑150 (MQ=255) tgtgGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGttt < 1:3777872/150‑1 (MQ=255) | GCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACA‑GGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTT > NC_002947/352956‑353254 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |