| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,878,982 | T→A | 7.4% | intergenic (+26/+79) | rpiA → / ← PP_5151 | ribose‑5‑phosphate isomerase A/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,878,982 | 0 | T | A | 7.4% | 894.0 / 4.5 | 316 | intergenic (+26/+79) | rpiA/PP_5151 | ribose‑5‑phosphate isomerase A/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (115/158); new base A (26/5); total (151/165) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.25e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 321 total aligned reads displayed.
GGAGCTGGAAGCGCAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCAT > NC_002947/5878833‑5879131 | ttgcaggcgacggtgccgcaggcggaggggattgcgatggatgaagcggggaccatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGC‑GGGTAAACCCGCTCCTa > 2:3005795‑M1/129‑150 (MQ=255) gCTGGAAGCGCAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGGAAAACCCCGCCGACA > 1:3363451‑M1/1‑150 (MQ=255) tGGAAGCGCAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAg < 1:3455684/150‑1 (MQ=255) cgcAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTAccc < 2:500938/150‑1 (MQ=255) aGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCAc < 1:1015895/150‑1 (MQ=255) aaCGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCGCCTACAAGGTACCCCACCCGcc > 2:8670079/1‑150 (MQ=255) aCGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCt > 2:7518189/1‑150 (MQ=255) tcgtcgGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAAcc < 1:8855414/150‑1 (MQ=255) gtcgGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGt < 2:7429055/150‑1 (MQ=255) cgGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTgg < 1:1304071/150‑1 (MQ=255) ggCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGc > 1:7425100/1‑150 (MQ=255) gtggtgACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGAt < 2:4764366/150‑1 (MQ=255) ggtgACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATcc < 1:1851388/150‑1 (MQ=255) gatggatgaagcggggaccatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATcc < 2:3056155‑M1/57‑1 (MQ=255) gACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTCAAACCGCTCCGACAAGGTACCCCACCCGCCGGGAACCGTGGCGATcccgg > 2:15966/1‑148 (MQ=255) gACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCAC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtg < 1:94708‑M2/150‑3 (MQ=255) ccAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgta > 2:7463003‑M2/1‑146 (MQ=255) atgaagcggggaccatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTa > 1:5367478‑M1/89‑150 (MQ=255) aaCGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGGTAAACCC‑CGCCAACAAGGGACCCCCCCCGCCCGGAACCCGGGCGAGCCCGGTggg > 1:236696/1‑150 (MQ=255) aaCGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCAACAAGGTACCCCACCGGCCGGGAACCGGGGCGATCCCtgtagg < 2:5602115‑M2/150‑7 (MQ=255) ggCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAgggatcgccacggttccaggccggtggggtaccttgtaggagc < 1:6970385‑M1/150‑44 (MQ=255) ggCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAgggatcgccacggttccaggccggtggggtaccttgtaggagc < 1:8687220‑M1/150‑44 (MQ=255) ggCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagc > 1:323241‑M2/1‑141 (MQ=255) gggaccatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCggg > 1:6912031‑M1/81‑150 (MQ=255) cTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcggg > 1:8023526‑M2/1‑138 (MQ=255) tGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCCGCCGGGAACCGGGGCGCTCCCgggaggcgcgggg < 2:4324241‑M2/150‑14 (MQ=255) ttCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCCCTCCAAAAATGTACCCCACCCGCCTGGAACCCGGGCGATCCCtgtaggagcgggttt < 1:7536578‑M2/150‑16 (MQ=255) accatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAg < 1:9022030‑M1/66‑1 (MQ=255) accatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAg > 2:9022030‑M1/78‑143 (MQ=255) gcggcgcggcCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttacc > 2:2764064‑M2/1‑132 (MQ=255) gcggcgcggcCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgg > 2:1054496‑M2/1‑132 (MQ=255) cggcgcggcCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttaccc > 1:4220359‑M2/1‑131 (MQ=255) gcgcggcCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttacccgc > 1:9114111‑M2/1‑129 (MQ=255) cggATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAAACCCCGCCGACAACGTACCCCACCGGCCGGGAACCGGGGCGATCCCGGTAGGAGCGGGTTTACCCGCCAACAGGccc > 2:2581811/1‑150 (MQ=255) ggATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgta < 2:5754340‑M2/122‑5 (MQ=255) ggATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgta > 1:5754340‑M2/1‑118 (MQ=255) tCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGGTAACCCCCTCCAAAAAGGTACCCCCCCCGCCGGGAACCCTGGCGATCCCGGGAGGAGCGGGGTTTCCCCCGAACACGCCCTggc > 1:3593172/1‑148 (MQ=255) tgctgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAg < 2:2084153/150‑1 (MQ=255) tgctgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAg < 2:1187879/150‑1 (MQ=255) tgcggctgctgGGCACCGCTGAAGGCGTGAATAGCCTGAAGGCCTATTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGTTGCGGGTTTACCCGCGAACAGGCCCTGACAg < 2:2259980/150‑1 (MQ=255) gctgctgctgGGCACCGCTTAAGGCGTGAAGAGCCTGAAGGCCGAGTAAACCCCTTCGG‑GGGTAAACCCGCTCCTACACGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTCGGCGCGGGTTTACCCGCGAACAGGCCCTGACAgg < 1:2604883/150‑1 (MQ=255) gctgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAgg < 2:5132705/150‑1 (MQ=255) ctgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGc < 2:8420692/150‑1 (MQ=255) tgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTGAAACCCCGCCGACAAGGTACCCCACCCCCCCGGGACCCTGGCGCTCCCAGGAGGGGCGGGGGTTCCCGCGCACACGCCCGGACAGGCg > 1:4830919/1‑150 (MQ=255) gcggctgGGCACCGCTTATGGCGTTAAGCGCCTGATGGCCTTGTAAAACCCTTCGG‑GGGTAAACCCGCCCCTACACGGTACCCCCCGGGCCTGTACCGGTGGCGATCCCTGTTGGTGGGGTTTTACCCGCGAACAGGCCCTGACAGGCGa < 1:1075739/147‑1 (MQ=255) gctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtca < 1:1335510/150‑1 (MQ=255) gctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtca < 1:5184362/150‑1 (MQ=255) tgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCGCCAACAAGGTACCCCACCCGCCGGGGACCGGGGCGCTCCCTGGAGGAGCGGGTTTACCCGCGCACACGCCCTGACAGGCGCtcagt > 2:1788691/1‑150 (MQ=255) gCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAAACCCCTCCAACAAGGTACCCCACCCGCCTGGAACCGGGGCGATCCCAGTAGGAGCGGGTTTACCCCCGAAAAGGCCCAGACAGGCGCtcagtcag > 2:1257918/1‑150 (MQ=255) cACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACACGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATcagtcagt < 2:8740351/150‑1 (MQ=255) cGCTGATGGCGTGAAGAGCCTGACGGCCGAGTAAAACCCTGCGC‑GGGTAAACCCGCTCCAACACGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGTTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCgg < 1:7884518/150‑1 (MQ=255) cGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAAACCGCTGCTAAAATGTAACCCACCGGCCTGGTACCGTGGCGATTCCTGTAGGTTCGGGTTTAACCGCGTACAGGCCCTGACAGGGGTTCAGTCATTCgg > 2:3427948/1‑150 (MQ=255) gCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGgc < 2:6819932/150‑1 (MQ=255) tGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttac < 2:1305607‑M2/111‑18 (MQ=255) gAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGgctgc < 1:7500394/150‑1 (MQ=255) cGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAAACCCCACCAACAAGCTACCCCACCCGCCGGGAACCCTGGCGATCCCAGGAGGAGCGGGGTTAACCGCGCACAGGCCCTGAAACGCGATCAGTCAGTCGGCTGCGTGaa > 2:8637017/1‑150 (MQ=255) gTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAac < 2:488346/150‑1 (MQ=255) gAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgg > 1:6509400‑M2/1‑85 (MQ=255) aaGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAAcaca < 2:7964275/150‑1 (MQ=255) agagCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACAt < 2:8882664/150‑1 (MQ=255) gagCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCCGCCGGGAACCGGGGCGAACCCTGGAGGAGCGGGTTTAACCGCGAACACGCCCAGACAGGCGATAAGACAGTCGGCGGCGTGAACCCATa > 2:2684612/1‑150 (MQ=255) gagCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCCCAACTACAAGGTACCCCACCCGCCTGGGACCGTGGCGATCCCGGTAGGGGCGGGTTTACCCGCGAACAGGCCCGGACAGGCGATCAGTCAGTCCGCTGCTTGAACACATa > 2:2051270/1‑150 (MQ=255) gagCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAAACCCCTCCAAAAAGGTACCCCACCCGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTAACCGCGAACAGGCCCTGACAGGGGATCAGTCAGTCGGCGGCTTGAAcacaga > 2:5827062/1‑148 (MQ=255) agCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAg < 1:8372510/150‑1 (MQ=255) ccTGAAGGCCGATTAAAACCCTTCGC‑GGTTAAACCCGCTCCTACACGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGTTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGaa < 1:1096654/150‑1 (MQ=255) gAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAg < 2:7287967/150‑1 (MQ=255) gAAGGCCGAGTAAAACCCTTCGC‑GGGTAAAACCGCTCCAACAAGGTACCCCACCGGCCTGGAAACGTGGGGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGCTCAGTCAGTCGGCTGCTTGAACACGTAGAAAAg > 2:534811/1‑150 (MQ=255) aGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACACGGTACCCCACCGGCCTGTAACCGGGGCGATCCCTTTTGGAGCGTTTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGt < 1:1787787/150‑1 (MQ=255) ccGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCg < 2:5658951/150‑1 (MQ=255) cGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGGCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAGCAGGCCGTCGGCGGCTTGAACACATAGGACAGGTTCgg > 2:8940319/1‑150 (MQ=39) attAAAACCGTTCGC‑GGTTAAACCCGCTCCTACACGGTACCCCACGGGCGTGGAACGGTGGCGATCCGTGTTGGAGGGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCt < 1:3044268/148‑1 (MQ=255) tAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACGGTGGCGATCCCTGTAGGAGGGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCa < 1:7138691/150‑1 (MQ=255) aaaCCCTTGGC‑GGTTAAACCCGCTCCTACACGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTTTTGGAGGGGTTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACt < 1:2661148/150‑1 (MQ=255) cTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGAGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCa < 2:7152855/150‑1 (MQ=255) TCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAgg > 1:2099198‑M1/1‑150 (MQ=255) TCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAgg > 1:5320781‑M1/1‑150 (MQ=255) GC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTa < 2:3803874‑M1/150‑1 (MQ=255) C‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGGAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTGCGGCTCACTGACCAGGtac < 2:4117487‑M1/150‑2 (MQ=255) GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTaaa > 1:3750670‑M1/1‑150 (MQ=255) ggTAAACCCGCTCCTACAgggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagcagatccgccggccgcgccgc > 2:8476108‑M1/1‑18 (MQ=255) GGTAAACCCGCTCCTACACGGTACCCCACCGGCCTGGACCCGGGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAAt > 2:1931433‑M1/1‑150 (MQ=255) GGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagtca < 1:5854717‑M1/100‑1 (MQ=255) gTAAACCCGCTCCTACAgggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagcagatccgccggccgcgccgcg > 1:2030149‑M1/1‑17 (MQ=255) GTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAg > 1:6174314‑M1/1‑143 (MQ=255) GTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAg < 2:6174314‑M1/143‑1 (MQ=255) aaaCCCGCTCCTACAgggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagcagatccgccggccgcgccgcgaa > 1:4474558‑M1/1‑15 (MQ=255) CCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTccc < 1:6806516‑M1/150‑1 (MQ=255) CCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTccc < 1:4635599‑M1/150‑1 (MQ=255) ccGCTCCTACAgggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagcagatccgccggccgcgccgcgaacagg > 1:7803910‑M1/1‑11 (MQ=255) ccGCTCCTACAgggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttc < 2:6509400‑M1/96‑86 (MQ=255) ccGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagcagatccgccggccgcgccgcgaacagg < 1:3430250‑M2/150‑106 (MQ=255) CCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTcccc < 1:7344429‑M1/150‑1 (MQ=255) CGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCg < 1:7220095‑M1/150‑1 (MQ=255) CTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCt > 1:8957529‑M1/1‑150 (MQ=255) cTACAgggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagcagatccgccggccgcgccgcgaacaggccgttg > 1:7545622‑M1/1‑5 (MQ=255) CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCa > 2:6657796‑M1/1‑150 (MQ=255) tACAgggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagcagatccgccggccgcgccgcgaacaggccgttgg > 2:3761352‑M1/1‑4 (MQ=255) TACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCAt < 2:6351026‑M1/150‑1 (MQ=255) TACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCAt < 2:1669233‑M1/150‑1 (MQ=255) TACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCAt < 1:3972827‑M1/150‑1 (MQ=255) | GGAGCTGGAAGCGCAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCAT > NC_002947/5878833‑5879131 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |