| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,878,998 | G→C | 8.9% | intergenic (+42/+63) | rpiA → / ← PP_5151 | ribose‑5‑phosphate isomerase A/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,878,998 | 0 | G | C | 8.9% | 847.8 / 10.8 | 277 | intergenic (+42/+63) | rpiA/PP_5151 | ribose‑5‑phosphate isomerase A/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (95/152); new base C (27/3); total (122/155) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.80e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 277 total aligned reads displayed.
AACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCC > NC_002947/5878852‑5879144 | aTCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAAc < 2:4816490/150‑1 (MQ=255) tcgtcgGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAAcc < 2:1209064/150‑1 (MQ=255) gtcgGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGt < 2:852832/150‑1 (MQ=255) gtcgGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGt < 2:7429055/150‑1 (MQ=255) gtcgGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGt < 2:6189531/150‑1 (MQ=255) tcgGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTg < 1:9153750/150‑1 (MQ=255) ggCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGc > 1:7425192/1‑150 (MQ=255) gtggtgACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGAt < 2:4764316/150‑1 (MQ=255) gACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTCAAACCGCTCCGAC‑AAGGTACCCCACCCGCCGGGAACCGTGGCGATcccgg > 2:15966/1‑148 (MQ=255) gACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtg > 1:5872964‑M2/1‑148 (MQ=255) atgaagcggggaccatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTa > 1:3402959‑M1/89‑150 (MQ=255) tgaagcggggaccatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAg > 1:8415917‑M1/88‑150 (MQ=255) cAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtag > 1:7545622‑M2/1‑145 (MQ=255) aaCGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGGTAAACCC‑CGCCAAC‑AAGGGACCCCCCCCGCCCGGAACCCGGGCGAGCCCGGTggg > 1:236696/1‑150 (MQ=255) ggggaccatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcccgtcagggcctgTTTGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCgg > 1:3316318‑M1/82‑150 (MQ=255) ccTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgg > 1:7803910‑M2/1‑139 (MQ=255) cTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcggg < 2:7500394‑M2/150‑13 (MQ=255) cTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcggg > 1:8023526‑M2/1‑138 (MQ=255) gTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAAACCCCACCAAC‑AAGGTACCCCCCCCGCCAGGAACCCTGGCGATCCCtgtaggagcgggtt < 1:8949641‑M2/150‑15 (MQ=255) accatttacctggtcagtgagccgaacctgttctatgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAg < 1:9022030‑M1/66‑1 (MQ=255) cgcggcgcggCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttac > 1:2030149‑M2/1‑133 (MQ=255) gcggcgcggcCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgg < 1:1054496‑M2/143‑12 (MQ=255) cggcgcggcCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttaccc > 1:4220359‑M2/1‑131 (MQ=255) cggcgcggcCGGCGGATCTGCTGCTGCTGGGCACCGATGAAGTCTTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggattaccc > 1:1089281‑M2/1‑131 (MQ=255) gcgcggcCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtaaacccgc > 1:7500434‑M2/1‑129 (MQ=255) gccgccggcGGATCTGCTGCTGCTGGGCACCGCTGAACGCGAGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GCGTAAACCCGCTCCTAC‑AACGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGCTAAACCcgctc < 2:6626916/147‑3 (MQ=255) ctggtcagtgagccgaacctgttctttgtgttcaagcagccgactgactgatcgcctgtcagggcctgTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCTATCCCTGTAGGAGCGGGTTTACCCGCGaa > 2:1913279‑M1/69‑150 (MQ=255) cggATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAAACCCCGCCTAC‑AAGGTACCCCACCCGCCTGGCACCGTGGCGATCCCTGGAGGAGCGGGTTTAACCGCGAACACGccc > 2:1067814/1‑150 (MQ=255) cggATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAAACCCCGCCGAC‑AACGTACCCCACCGGCCGGGAACCGGGGCGATCCCGGTAGGAGCGGGTTTACCCGCCAACAGGccc > 2:2581811/1‑150 (MQ=255) ggATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgta > 1:5754340‑M2/1‑118 (MQ=255) ggATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgta < 2:5754340‑M2/122‑5 (MQ=255) tCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGGTAACCCCCTCCAAA‑AAGGTACCCCCCCCGCCGGGAACCCTGGCGATCCCGGGAGGAGCGGGGTTTCCCCCGAACACGCCCTggc > 1:3593172/1‑148 (MQ=255) tCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGGGAAACCCCGCCAAC‑AACGTAACCCCCCCGCCGGGCACCCGGGCGCTCCCCCTAGGGGCCGGGTTTCCCCCGCACACGCCCAGAc > 1:6897392/1‑150 (MQ=255) ctgctgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACa < 2:5653077/150‑1 (MQ=255) tgctgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAg < 2:2084153/150‑1 (MQ=255) tgcggctgctgGGCACCGCTGAAGGCGTGAATAGCCTGAAGGCCTATTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGTTGCGGGTTTACCCGCGAACAGGCCCTGACAg < 2:2259980/150‑1 (MQ=255) gctgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAgg < 2:5132705/150‑1 (MQ=255) gctgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAAACCCCGCCAAC‑AAGGTACCCCACCCGCCGGGAAACCTGGCGATCCCAGTAGGAGCGGGTTTTCCCGCGAACAGGCCCAGACAgg > 2:1305958/1‑150 (MQ=255) ctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGGGAACCCCCGCCGACAAAGGGACCCC‑CCCCCCGGGGACCCGGGCCCTCCCAGTAGGGGCGGGGTTTACCGCGGACACGCCCAGCCAGGCgct > 1:1913439/1‑148 (MQ=255) tgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGGAGGAGCGGGTTTACCCCCGAACAGGCCCTGACAGGCGCtc > 2:3537064/1‑150 (MQ=255) gctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtca < 1:1335510/150‑1 (MQ=255) ctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGTCCTGACAGGCGAtcag > 2:2933498/1‑150 (MQ=255) ctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAAACCCCGCCAAC‑AAGGTACCCCCCCGGCCGGGAACCGGGGCGCTCCCGGTAGGAGCGGGTTTACCCGCGACCAGGCCCGGACAGGCGAtccg > 2:8649224/1‑148 (MQ=255) tgGGCCCCGCTGAATGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCCCCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagt < 2:3923921/150‑1 (MQ=255) tgGGCACCGCTGAAGGCGTGAAGAGCCTGACGGCCGAGTAAACCCCTGCGC‑GGGTAAACCCGCTCCCAC‑CCGGTACCCCACCGGCCTGGACCCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagt < 1:3435066/150‑1 (MQ=39) ctatgggttcacgccgccgactgactgatcgcctgtccgggcctgTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTCCCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagtc > 2:4244106‑M1/46‑150 (MQ=255) gCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAAACCCCTCCAAC‑AAGGTACCCCACCCGCCTGGAACCGGGGCGATCCCAGTAGGAGCGGGTTTACCCCCGAAAAGGCCCAGACAGGCGCtcagtcag > 2:1257918/1‑150 (MQ=255) cGCTGATGGCGTGAAGAGCCTGACGGCCGAGTAAAACCCTGCGC‑GGGTAAACCCGCTCCAAC‑ACGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGTTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCgg < 1:7884518/150‑1 (MQ=255) cGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCgg < 1:1494513/150‑1 (MQ=255) cGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAAACCGCTGCTAA‑AATGTAACCCACCGGCCTGGTACCGTGGCGATTCCTGTAGGTTCGGGTTTAACCGCGTACAGGCCCTGACAGGGGTTCAGTCATTCgg > 2:3427948/1‑150 (MQ=255) gCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGgc < 2:6819932/150‑1 (MQ=255) ccggCGTTACGAGCCTGACGGCCGAGTAAACCCCTTCGG‑GGTTAACCCCGCTCCTAC‑ACGGTACCCCCCGGGCCTGGAACGGTGGCGAGCCCTGTCGGCGGGGGTTTCCCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGgctgct < 1:2537442/148‑1 (MQ=255) aGGCGTGAAGAGCCTGAAGGCCGAGTAAACCCCTGCGC‑GGGTAAACCCGCTCCTAC‑ACGGTCCCCCACCGGCCTGGAACCGGGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCtt < 1:462748/150‑1 (MQ=39) aGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCtt < 1:5036315/150‑1 (MQ=255) aaGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAAcaca < 2:9140930/150‑1 (MQ=255) aaGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAAcaca < 2:8934353/150‑1 (MQ=255) aaGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAAcaca < 2:7964209/150‑1 (MQ=255) agagCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACAt < 2:8462918/150‑1 (MQ=255) agagCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACAt < 2:1049848/150‑1 (MQ=255) gagCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCCGCCGGGAACCGGGGCGAACCCTGGAGGAGCGGGTTTAACCGCGAACACGCCCAGACAGGCGATAAGACAGTCGGCGGCGTGAACCCATa > 2:2684612/1‑150 (MQ=255) tgCCTGAAGGCCGTGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAg < 1:7366218/149‑1 (MQ=255) agCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAg < 2:8826585/150‑1 (MQ=255) tGAAGGCCGATTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAG‑TAGGTACCCCTCCGGCCTGTAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACa < 2:8678668/150‑1 (MQ=255) gAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAg < 2:7287967/150‑1 (MQ=255) gAAGGCCGAGTAAAACCCTTCGC‑GGGTAAAACCGCTCCAAC‑AAGGTACCCCACCGGCCTGGAAACGTGGGGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGCTCAGTCAGTCGGCTGCTTGAACACGTAGAAAAg > 2:534811/1‑150 (MQ=255) gCCGAGTAAAACCCTTCGC‑GGGTTAAACCGCTGCTAA‑AAGGTTCCCCACCGGGCTGGAAACGTGGGGATGGGTGTTTGTTGGGGTTTAACCGGGTACAGGCCCTTACAGGGGTTAAGTGAGTGGGGTTGTTTTACACATTGAAAAGGttg > 2:3349428/1‑149 (MQ=255) attAAAACCGTTCGC‑GGTTAAACCCGCTCCTAC‑ACGGTACCCCACGGGCGTGGAACGGTGGCGATCCGTGTTGGAGGGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCt < 1:3044268/148‑1 (MQ=255) tAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCa < 2:8992612/150‑1 (MQ=255) aaaaCCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCAc < 2:8400752/150‑1 (MQ=255) aaccccTTCGC‑GGGTAAACCCGCTCCTAC‑ACGGTACCCCACCGGCCTGGAACCGTGGCGATCCCGGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACt < 1:4714613/147‑1 (MQ=255) cTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTTGGCTCACTGACCa > 2:4883747/1‑150 (MQ=255) cTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGAGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCa < 2:7152855/150‑1 (MQ=255) TTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAg < 2:2033544‑M1/150‑1 (MQ=255) TCGC‑TGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCTATCCCTTTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAgg > 1:5320770‑M1/1‑150 (MQ=255) TCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAgg > 1:2099198‑M1/1‑150 (MQ=255) GC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTa < 1:6953969‑M1/150‑1 (MQ=255) cggtaAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTTTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTaa > 1:1261794‑M1/6‑150 (MQ=255) GGTAAACCCGCTCCTAC‑ACGGTACCCCACCGGCCTGGACCCGGGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAAt > 2:1931433‑M1/1‑150 (MQ=255) GGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagtca > 2:5854717‑M1/1‑100 (MQ=255) tTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCTATCCCTGTAGGTGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATg > 1:4132196‑M1/2‑150 (MQ=255) GTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAg > 1:6174314‑M1/1‑143 (MQ=255) GTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATg > 1:2863467‑M1/1‑150 (MQ=255) AACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTc > 1:7290257‑M1/1‑150 (MQ=255) AACCCGCTCCTAC‑AAGGAACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTc > 1:5324941‑M1/1‑150 (MQ=255) ACCCGCTCCTAC‑ACGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTcc > 1:7077482‑M1/1‑150 (MQ=255) CCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTccc < 1:6806516‑M1/150‑1 (MQ=255) CCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTccc < 1:6420502‑M1/150‑1 (MQ=255) CCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTccc < 1:7176449‑M1/150‑1 (MQ=255) CCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTccc < 1:3470093‑M1/150‑1 (MQ=255) CCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTcccc < 1:3963043‑M1/150‑1 (MQ=255) gCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagcagatccgccggccgcgccgcgaacaggcc < 1:8687220‑M2/150‑108 (MQ=255) TAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCAt < 2:6351026‑M1/150‑1 (MQ=255) TAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCAt < 2:1669233‑M1/150‑1 (MQ=255) TAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCAt < 1:18350‑M1/150‑1 (MQ=255) AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCa < 1:5826878‑M1/150‑1 (MQ=255) aGGTACCCCACCGGCCTGGACCCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTcatccat < 1:5376937/150‑1 (MQ=255) aGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTcatccat < 2:5484389/150‑1 (MQ=255) ggTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGTTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTcatccatc < 1:2631797/150‑1 (MQ=255) gTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGGGGTTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCg < 1:15966/150‑1 (MQ=255) cACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATcc > 2:2718550/1‑150 (MQ=255) | AACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGC‑GGGTAAACCCGCTCCTAC‑AAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCC > NC_002947/5878852‑5879144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |