| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,899,748 | A→G | 13.0% | intergenic (‑170/+64) | PP_5172 ← / ← PP_5173 | hypothetical protein/RND family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,899,748 | 0 | A | G | 13.0% | 571.8 / 60.3 | 218 | intergenic (‑170/+64) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| Reads supporting (aligned to +/- strand): ref base A (87/98); new base G (8/20); total (95/123) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.01e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.10e-01 | |||||||||||
Only 100 of 222 total aligned reads displayed.
GGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGA > NC_002947/5899599‑5899897 | gggCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATa < 1:2041447/150‑1 (MQ=255) ggCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATAc < 2:5586468/150‑1 (MQ=255) gcgcCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCG‑GATaag > 1:4184585/1‑148 (MQ=255) gcCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACggt > 1:5831930/1‑150 (MQ=255) gcCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACggt < 2:3910507/150‑1 (MQ=255) gcCGGGCAGAGGTTGGAAGGGGTTTTGCGCCTGGCTGGAGGGCACTAGAAGTGAGGCGGGATTATCCTTAAAAATACTGATTAAGAATTTTTTTATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACggt < 2:4683411/150‑1 (MQ=255) ccGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACggtg < 1:6231694/150‑1 (MQ=255) ccGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACggtg < 2:8002774/150‑1 (MQ=255) ccGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACggtg < 2:7692516/150‑1 (MQ=255) ggCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAAACCCC‑AATACAGTGGTc > 1:7701644/1‑150 (MQ=255) cAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGa < 1:6205000/150‑1 (MQ=255) cAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTAAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGa < 2:2105824/150‑1 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTCCCCCG‑AAAACCGGGGTCGAt > 1:8032023/1‑150 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGAt > 1:8339929/1‑150 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGAt > 2:5246054/1‑150 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGAt < 2:8288876/150‑1 (MQ=255) agGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGc > 2:3374008/1‑150 (MQ=255) ttGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCa < 1:35821/150‑1 (MQ=255) gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATc < 1:574207/150‑1 (MQ=255) ggggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATcaca > 1:971708/1‑150 (MQ=255) ggggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCa > 2:8061502/1‑150 (MQ=255) gggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTCCCGCG‑AATACGGTGGTCGATGCACCATCGCAt > 2:3036735/1‑150 (MQ=255) gggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCAt > 2:3037365/1‑150 (MQ=255) ttttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTcg < 2:8453508/150‑1 (MQ=255) tttGCGCCTGTCTTGAGGGCAATAGTAGAGAGGCGTTATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCAATTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTcgc < 2:5111976/150‑1 (MQ=39) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTcgcg < 2:8867713/150‑1 (MQ=37) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTcgcg < 1:7789583/150‑1 (MQ=37) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTcgcg < 2:7014522/150‑1 (MQ=37) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTcgcg < 2:4263873/150‑1 (MQ=37) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTcgcg < 1:1439329/150‑1 (MQ=255) tgtgcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:3828108/147‑1 (MQ=255) tGCGCCTGGCTTGAGGGCTTTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTATGATTTTTTTTATAACCATTTAAGTGAACACGCGTCTTGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCTCCATCGCATTCGCgg < 2:2717539/150‑1 (MQ=38) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGTATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:1581254/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:5136772/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:2357530/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCgg < 2:4566035/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCgg < 2:6592079/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:177000/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:5885514/150‑1 (MQ=25) gcgcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCggg < 2:8822626/150‑1 (MQ=25) gcgcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCggg < 2:8935574/150‑1 (MQ=255) gcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTa > 2:1423786/1‑150 (MQ=255) gCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAccc < 2:1825920/150‑1 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAACCGc > 2:7678273/1‑150 (MQ=255) tgggCAATAGTCTTGAGGCGGTATTATTCTTAAAAATACTGTTTAAGATTTTTTATATAACCATTTAAGAGAACACCCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTcc < 2:7044180/149‑1 (MQ=18) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGTACACGCCTCTGGTAGGAGCGGGTTTAACCGCG‑AATACGGTGGTCGATGCACCATCGCATTAGCGGGTAAACCCGCACCTa > 1:3015212/1‑150 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTa > 2:4837623/1‑150 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTGTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGGTTAACCGCGTAAAACGG‑GGTCGATGCACCCAAGCAATCTCCGGGAAACCCGCGcccc > 1:6515826/1‑148 (MQ=255) tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCCCCATCGCATTCGCGGGTAAACCCGCTCCTACCAgg < 2:8214377/150‑1 (MQ=255) tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAgg < 2:3603024/150‑1 (MQ=255) agtagtGAGGCGGTATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTCAGAGAACACGCCTCTGGTAGGAGCGGTTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAggg < 2:6558686/150‑1 (MQ=255) agtagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAAACGCG‑AATACCGTGGTCGATTCACCATAGCAATCGCGGGTAAAACCCCTCCAACCAggg > 1:6317822/1‑150 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGGGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGa < 1:3336147/101‑1 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGGGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGa > 2:3336147/1‑101 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATgg > 1:7628507/1‑150 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGCGTTTACCCGCG‑AATACGGTGGTCGATGCACCCTCGCATTCGCGGGTCAACCCGCTCCTACCAGGGGCCATATgg > 1:4672963/1‑150 (MQ=255) attattCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATAGGGTGGTCGATGCACCAGCGATTGCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCtt < 2:2421043/150‑1 (MQ=38) ttataCTAAAAAATAATGTTTAATAATTTTTTTATAACCTTTTAAGATAACACGCCTCTGTTTGGAGCGGTTTTACCCGCT‑ATTACGGTGTTCGATGCACCATCGCATTCGCGGTAAAACCCGCTCCTACCAGGGGCCATATGGGCCTTc < 2:4629576/150‑1 (MQ=255) tattatTAAAAATACTGTTAAAGATTTTTTATATAACCTTTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCa < 2:1128194/150‑1 (MQ=255) tattCTTAAAAATACTGTTTAATAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGTTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCa < 1:7616149/150‑1 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCAccgtat > 1:6988321/1‑95 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCAccgtat < 2:6988321/99‑5 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCgt > 2:5229843/1‑150 (MQ=255) aTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATAAGGTGGTCGATGCACCAACGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCCTATGGGCCTTCAGGCGTGTTTCt > 2:8653785/1‑150 (MQ=255) tGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCC‑AAAACGGTGGTCGATGCACCATCGCATTCGCCGGTAAACCCCCTCCTACCAGGGGCCAAAAGGGCCATCAGGCGTGTTTATTCgg > 1:2885225/1‑150 (MQ=255) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTcgc < 1:1070061/94‑1 (MQ=14) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCt > 2:3572037/1‑150 (MQ=255) ttAAGAATTTTTATATAACCATTTAAGAGAACCCGCCTCGGGTAGGAGCGGGTTTACCCGCG‑AATCCGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTc < 2:227951/150‑1 (MQ=255) tcaatatttttaATAAAACCATTTCAGACACCCCGCCTCTGGTCGGCGCGGGTTTACCCGCG‑AATCCGGTGGTCGATGCACCATCGCATTCGGGGGAAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTc < 1:7082576/143‑1 (MQ=255) tAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCCCG‑AATACGGTGGTCGATGCACCAACGCATTAGCGGGTAAAACCGCTCCTACCAGGGGCCAAATGGGCCATCAGGCGTGTTTATGCGGCTcg > 1:4484237/1‑150 (MQ=255) aGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcgcg < 2:514491/150‑1 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGTTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 1:9076806/150‑1 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 2:2678163/150‑1 (MQ=255) ttttATATAACCATTTAAGAGAACGCGCCTCTGGTAGGAGCGGGTTTTACCCCG‑AAAAACGTGGTCGATGCACCAAAGCCTAAGCCGGTAAAACCCCACCAACCAAGGGCCCAAATGGCCATAAGGCCTGTTTTTGCGGCGCGCgggtat > 1:6288230/1‑146 (MQ=255) taACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCa < 2:5702608/150‑1 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATAAGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCCCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg > 2:200790/1‑150 (MQ=255) acgagaCCCCGCCTGGGGTAGGCGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCAGCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTa < 2:5831930/148‑1 (MQ=38) aaCACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑CATACGGGGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCAGATGGGCCTTCAGGCGGGTGTCTGCGGCTCGCGGCTCTTGTACCAGGCCACGTACAgcg > 2:5644890/1‑150 (MQ=38) aaCACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGAGGCACCATCGCCATCGCGGGGAAACCCGCGCCGACCCGGGGCCCGCGGGGCCGTCAGGCGGGTTTCGGCGGCACGCGGATCGTGTGCCCGGCCCCGGACAgcg > 2:1072483/1‑150 (MQ=255) ctgtGGTCGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGAAACCCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAg < 1:7356338/147‑1 (MQ=255) tctGGTAGGAGCGGGTTTACCCGCG‑ACTACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTTCGGCTCGCGGATCTTTTACCAGGCCACGTACAGCGccggccgg > 2:7069500/1‑150 (MQ=255) gtcggAGCGGGTTTACCCGCG‑AATAGGGTGGTCGCTGCACCATCGCATTCGCGGGTAACCCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAca < 1:4443775/147‑1 (MQ=255) gTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATCCACCATCGCATTCGCGGTTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAca < 1:1423786/150‑1 (MQ=255) aGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACagcagc < 2:7629181/150‑1 (MQ=255) aGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACagcagc < 2:6401974/150‑1 (MQ=255) tACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCaa > 2:1554437/1‑150 (MQ=255) aCCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAg > 1:550184/1‑150 (MQ=255) ccGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCg < 1:8832238/89‑1 (MQ=14) ccGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1902247/1‑150 (MQ=25) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:6780860/1‑150 (MQ=255) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:6103954/1‑150 (MQ=255) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:6160820/1‑150 (MQ=255) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:7207346/1‑150 (MQ=255) cgcg‑AATCCGGTGGGCGCTCCACCAGCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc < 1:3494680/150‑1 (MQ=255) cgcg‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc < 2:6850531/150‑1 (MQ=255) gcg‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 2:3139962/1‑150 (MQ=255) aaTACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCa > 1:3280387/1‑150 (MQ=255) aaTACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCa > 1:294346/1‑150 (MQ=255) aaTACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCa > 1:2647286/1‑150 (MQ=255) aCGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 2:7701644/150‑1 (MQ=255) | GGGCGCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGA > NC_002947/5899599‑5899897 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |