| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,899,751 | G→A | 12.8% | intergenic (‑173/+61) | PP_5172 ← / ← PP_5173 | hypothetical protein/RND family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,899,751 | 0 | G | A | 12.8% | 538.7 / 56.5 | 205 | intergenic (‑173/+61) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| Reads supporting (aligned to +/- strand): ref base G (85/92); new base A (7/19); total (92/113) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.70e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.91e-01 | |||||||||||
Only 100 of 223 total aligned reads displayed.
GCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATG > NC_002947/5899603‑5899899 | gcCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACggt > 1:5831930/1‑150 (MQ=255) ccGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACggtg < 2:7692516/150‑1 (MQ=255) ccGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACggtg < 1:6231694/150‑1 (MQ=255) ggCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTc < 2:7907494/150‑1 (MQ=255) ggCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAAACCCC‑AATACAGTGGTc > 1:7701644/1‑150 (MQ=255) cAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGa < 1:6205000/150‑1 (MQ=255) cAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTAAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGa < 2:2105824/150‑1 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTCCCCCG‑AAAACCGGGGTCGAt > 1:8032023/1‑150 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGAt > 1:8339929/1‑150 (MQ=255) gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATc < 1:3600486/150‑1 (MQ=255) gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATc < 1:574207/150‑1 (MQ=255) ggggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATcaca > 1:971708/1‑150 (MQ=255) ggggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCa < 1:2892846/150‑1 (MQ=255) gggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTCCCGCG‑AATACGGTGGTCGATGCACCATCGCAt > 2:3036735/1‑150 (MQ=255) gggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCAt > 2:3037365/1‑150 (MQ=255) tttGCGCCTGTCTTGAGGGCAATAGTAGAGAGGCGTTATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCAATTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTcgc < 2:5111976/150‑1 (MQ=39) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTcgc < 2:8401084/150‑1 (MQ=255) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTcgcg < 2:7014522/150‑1 (MQ=37) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTcgcg < 2:4263873/150‑1 (MQ=37) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTcgcg < 2:8867713/150‑1 (MQ=37) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTcgcg < 2:3362485/150‑1 (MQ=255) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTcgcg < 1:1439329/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGTATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:1581254/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:5136772/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCgg < 2:4566035/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCgg < 2:6592079/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:177000/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:5885514/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGAAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAACAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:7954584/150‑1 (MQ=255) gcgcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCggg < 2:8822626/150‑1 (MQ=25) gcgcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCggg < 2:8935574/150‑1 (MQ=255) gcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTa > 2:1423786/1‑150 (MQ=255) tGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑c < 2:6865024/150‑1 (MQ=255) gCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑ccc < 2:1825920/150‑1 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑ACCGc > 2:7678273/1‑150 (MQ=255) ggCATTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATAGCATTCGCGGGTAAA‑CCCGCTCCTa > 2:7082576/1‑150 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTa > 2:6552152/1‑150 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTa > 2:2720996/1‑150 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTGTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGGTTAACCGCGTAAAACGG‑GGTCGATGCACCCAAGCAATCTCCGGGAAA‑CCCGCGcccc > 1:6515826/1‑148 (MQ=255) agtagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAAACGCG‑AATACCGTGGTCGATTCACCATAGCAATCGCGGGTAAA‑ACCCCTCCAACCAggg > 1:6317822/1‑150 (MQ=255) tagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACCGTGGTAGATGCACCAACGCATTCGCGGGTAAA‑CCCCCTCCTACCAGGGGc > 2:4666238/1‑150 (MQ=255) gAGGCGGGATTATAAATAAAAATACTCTTAAACAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGCAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGCTAAA‑CCCGCTCCTACCAGGGGCCata < 2:8020514/150‑1 (MQ=38) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTACGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATgg < 2:8123905/150‑1 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATgg > 1:7628507/1‑150 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGCGTTTACCCGCG‑AATACGGTGGTCGATGCACCCTCGCATTCGCGGGTCAA‑CCCGCTCCTACCAGGGGCCATATgg > 1:4672963/1‑150 (MQ=255) attattCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATAGGGTGGTCGATGCACCAGCGATTGCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCtt < 2:2421043/150‑1 (MQ=38) tattatTAAAAATACTGTTAAAGATTTTTTATATAACCTTTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCa < 2:1128194/150‑1 (MQ=255) tattCTTAAAAATACTGTTTAATAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGTTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCa < 1:7616149/150‑1 (MQ=255) tCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACCCGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGc < 2:3405783/150‑1 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCAccgtat < 2:6988321/99‑5 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCAccgtat > 1:6988321/1‑95 (MQ=255) aTACTCTATAACAATTTTTATATAACCATTTAAGACAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATCGGCCTTCAGGCGTGTTTCt < 2:8268381/150‑1 (MQ=38) tACTTTTTAACAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTTGGAGCGGGTTTACCCGCT‑AATACGGTGGTCGATGCACCATCGCATTCGCGGTTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTg < 2:845365/150‑1 (MQ=255) attttttAATATTTTTTATAAAACATTTTACGACAACACGCCTGTGTTTGGCGGGGTTTTACCCGCG‑AATAGGGTGGTCGAGGCCCATTCGCATTCGCGGTTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGc < 1:2781324/146‑1 (MQ=255) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTcgc < 1:1070061/94‑1 (MQ=14) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCt > 2:3572037/1‑150 (MQ=255) ttAAGAATTTTTATATAACCATTTAAGAGAACCCGCCTCGGGTAGGAGCGGGTTTACCCGCG‑AATCCGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTc < 2:227951/150‑1 (MQ=255) ttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTc < 2:5231702/150‑1 (MQ=255) ttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCGTCAGGCGGGTTTCTGCGGCTc > 2:6325116/1‑150 (MQ=255) tgaaGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATAGGGTGGTCGATGCCCCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTc < 2:4791944/148‑1 (MQ=255) tcaatatttttaATAAAACCATTTCAGACACCCCGCCTCTGGTCGGCGCGGGTTTACCCGCG‑AATCCGGTGGTCGATGCACCATCGCATTCGGGGGAAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTc < 1:7082576/143‑1 (MQ=255) tAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCCCG‑AATACGGTGGTCGATGCACCAACGCATTAGCGGGTAAA‑ACCGCTCCTACCAGGGGCCAAATGGGCCATCAGGCGTGTTTATGCGGCTcg > 1:4484237/1‑150 (MQ=255) ataaTTTTTATATAACAATTTAACACAACACGCCTCTGGTAGGAGCGGTTTTACCCGCC‑AATACGGTGGTCGATGAACCATCGCATTCGCGGTTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcgcg < 2:1589587/148‑1 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGTTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 1:9076806/150‑1 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 2:2678163/150‑1 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 2:2053433/150‑1 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 2:5228822/150‑1 (MQ=255) tttttAAAAAACAATTTAAGACACCACGCCTCTGGTAGGCGGGTTTTTACCGGCT‑AATAGGTTGTTCGATGCACCATCGAATCCG‑GGGTAAACCCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 1:2642095/150‑1 (MQ=255) ttttATATAACCATTTAAGAGAACGCGCCTCTGGTAGGAGCGGGTTTTACCCCG‑AAAAACGTGGTCGATGCACCAAAGCCTAAGCCGGTAAA‑ACCCCACCAACCAAGGGCCCAAATGGCCATAAGGCCTGTTTTTGCGGCGCGCgggtat > 1:6288230/1‑146 (MQ=255) atataACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTa < 2:4959498/150‑1 (MQ=255) taACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCa < 2:5702608/150‑1 (MQ=255) cATTTACGAGAACCCGCCTCTGGTTGGAGCGGGTTTACCCGCT‑AATACGGTGGTCGATGCCCCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGcc < 2:706/150‑1 (MQ=38) acgagaCCCCGCCTGGGGTAGGCGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCAGCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTa < 2:5831930/148‑1 (MQ=38) aaCACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCGTCAGGCGTGTTTCTGCGGCGCGCGGATCTTGTACCCGGCCACGTCCAgcg > 2:5644868/1‑150 (MQ=255) aaCACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGAGGCACCATCGCCATCGCGGGGAAA‑CCCGCGCCGACCCGGGGCCCGCGGGGCCGTCAGGCGGGTTTCGGCGGCACGCGGATCGTGTGCCCGGCCCCGGACAgcg > 2:1072483/1‑150 (MQ=255) cacGCCTCTGGTTGGAGGGGTTTTCCCGGCT‑AATCCGGTGGTCGATGCACCATCGCTTTCGCGGGAAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGcc < 1:3374008/150‑1 (MQ=255) acGCCTCTGGTAGGAGCGGGGTTAACCGCG‑AATACGGTGGTCGATGCACCATCGCAATCGCGGGTAAA‑CCCCCTCCGACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTTTAACAGGCCACGTACAGCGCCg > 1:2976087/1‑150 (MQ=255) ctgtGGTCGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGAAAC‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAg < 1:7356338/147‑1 (MQ=255) gtcggAGCGGGTTTACCCGCG‑AATAGGGTGGTCGCTGCACCATCGCATTCGCGGGTAAC‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAca < 1:4443775/147‑1 (MQ=255) gTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATCCACCATCGCATTCGCGGTTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAca < 1:1423786/150‑1 (MQ=255) tAGGAGCGGGTTTACCCGCT‑AATACGGTGGTCGATGCACCATCGCATTCGCGGTTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcag < 2:5401090/150‑1 (MQ=255) aGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACagcagc < 2:7628507/150‑1 (MQ=255) aGCGGGTTTACCCGCG‑AATACGGGGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACagcagc < 2:4199532/150‑1 (MQ=255) aCCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAg > 1:550184/1‑150 (MQ=255) ccGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCg < 1:8832238/89‑1 (MQ=14) ccGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1902247/1‑150 (MQ=25) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:6780860/1‑150 (MQ=255) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:2112917/1‑150 (MQ=255) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:3880198/1‑150 (MQ=255) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:6103954/1‑150 (MQ=255) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:6160820/1‑150 (MQ=255) gcg‑AATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:331475/1‑150 (MQ=37) gcg‑AATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 2:3806046/1‑150 (MQ=37) gcg‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 2:3139962/1‑150 (MQ=255) gccaaTTCGGTGGTCTAGGCACCACCGCTTCCGCGGGAAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg < 1:3036735/147‑1 (MQ=255) tACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACg > 1:3581040/1‑150 (MQ=255) aCGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 2:7701644/150‑1 (MQ=255) ggtggtCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCCTATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 2:8787932/1‑150 (MQ=255) ggtggtCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCGGCGTCTGCAAGGTCGCCCCgagg > 2:7440073/1‑148 (MQ=255) ggtggtCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCAGATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 2:3599549/1‑150 (MQ=255) | GCCGGGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATG > NC_002947/5899603‑5899899 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |