| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,899,756 | C→G | 13.1% | intergenic (‑178/+56) | PP_5172 ← / ← PP_5173 | hypothetical protein/RND family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,899,756 | 0 | C | G | 13.1% | 587.2 / 69.4 | 214 | intergenic (‑178/+56) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| Reads supporting (aligned to +/- strand): ref base C (88/97); new base G (9/19); total (98/116) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.90e-01 | |||||||||||
Only 100 of 218 total aligned reads displayed.
GGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCG > NC_002947/5899607‑5899905 | ggCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTc < 2:7907494/150‑1 (MQ=255)ggCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAAACCCCAATACAGTGGTc > 1:7701644/1‑150 (MQ=255) cAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGa < 1:6205000/150‑1 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTTCCCCCGAAAACCGGGGTCGAt > 1:8032023/1‑150 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGAt < 2:8288876/150‑1 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGAt > 1:8339929/1‑150 (MQ=255) ttGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCa < 1:4603395/150‑1 (MQ=255) ttGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCa < 1:35821/150‑1 (MQ=255) ggggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATcaca > 1:971708/1‑150 (MQ=255) ggggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCa < 1:2892846/150‑1 (MQ=255) gggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTTCCCGCGAATACGGTGGTCGATGCACCATCGCAt > 2:3036735/1‑150 (MQ=255) gggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCAt > 2:3037365/1‑150 (MQ=255) gTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGGTTTACCCCCCAA‑AAGGTGGTCGCATCACCAGAGCAtta > 1:3030864/1‑149 (MQ=255) tttGCGCATTGCTTGAGGGAAATAGTAGTGACGCGGGATTATACTTAAAAATACTGATTAACAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgc < 2:5112675/150‑1 (MQ=39) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcgcg < 2:4263873/150‑1 (MQ=37) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgcg < 2:3362485/150‑1 (MQ=255) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgcg < 1:1439329/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCTTTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTATGATTTTTTTTATAACCATTTAAGTGAACACGCGTCTTGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCTCCATCGCATTCGCgg < 2:2717539/150‑1 (MQ=38) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGTATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:1581254/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:2357530/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 2:4566035/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:5136772/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 2:6592079/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:5571383/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:6550190/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:4149537/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:1719797/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:5885514/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGAAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAACAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:7954584/150‑1 (MQ=255) gcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAACCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTa > 2:1423786/1‑150 (MQ=255) tGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAc < 2:6865024/150‑1 (MQ=255) gCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAccc < 2:1825920/150‑1 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGc < 2:8898291/150‑1 (MQ=25) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAACCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAACCGc > 2:7678273/1‑150 (MQ=255) tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCCCCATCGCATTCGCGGGTAAACCCGCTCCTACCAgg < 2:8214377/150‑1 (MQ=255) tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAgg < 2:3603024/150‑1 (MQ=255) tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAgg > 2:5058302/1‑150 (MQ=255) agtagtGAGGCGGTATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTCAGAGAACACGCCTCTGGTAGGAGC‑GGTTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAggg < 2:6558686/150‑1 (MQ=255) agtagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAAACGCGAATACCGTGGTCGATTCACCATAGCAATCGCGGGTAAAACCCCTCCAACCAggg > 1:6317822/1‑150 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATgg > 1:7628507/1‑150 (MQ=255) attattCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATAGGGTGGTCGATGCACCAGCGATTGCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCtt < 2:2421043/150‑1 (MQ=38) ttataCTAAAAAATAATGTTTAATAATTTTTTTATAACCTTTTAAGATAACACGCCTCTGTTTGGAGC‑GGTTTTACCCGCTATTACGGTGTTCGATGCACCATCGCATTCGCGGTAAAACCCGCTCCTACCAGGGGCCATATGGGCCTTc < 2:4629576/150‑1 (MQ=255) tattatTAAAAATACTGTTAAAGATTTTTTATATAACCTTTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCa < 2:1128194/150‑1 (MQ=255) tattCTTAAAAATACTGTTTAATAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGTTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCa < 1:7616149/150‑1 (MQ=255) tCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACCCGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGc < 2:3405783/150‑1 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg > 2:7620623/1‑108 (MQ=18) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCgt > 2:7029733/1‑150 (MQ=255) aTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATAAGGTGGTCGATGCACCAACGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCCTATGGGCCTTCAGGCGTGTTTCt > 2:8653785/1‑150 (MQ=255) tACTTTTTAACAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTTGGAGC‑GGGTTTACCCGCTAATACGGTGGTCGATGCACCATCGCATTCGCGGTTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTg < 2:845365/150‑1 (MQ=255) attttttAATATTTTTTATAAAACATTTTACGACAACACGCCTGTGTTTGGCGG‑GGTTTTACCCGCGAATAGGGTGGTCGAGGCCCATTCGCATTCGCGGTTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGc < 1:2781324/146‑1 (MQ=255) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTcgc < 1:1070061/94‑1 (MQ=14) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCt > 2:3572037/1‑150 (MQ=255) ttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTc < 2:5231702/150‑1 (MQ=255) ttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCGTCAGGCGGGTTTCTGCGGCTc > 2:6325116/1‑150 (MQ=255) tgaaGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATAGGGTGGTCGATGCCCCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTc < 2:4791944/148‑1 (MQ=255) tAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAAAAAGGTGGGCGATGCACCATCGCATTAGCGGGTAAACCCGCTCCTACCAGGGGCCATAGGGGCCTTCAGGCGTGTTTCTGCGGCTcg > 1:6081098/1‑150 (MQ=39) tAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAACCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTATGCGGCTcg > 1:4484190/1‑150 (MQ=255) gAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTTCCCGCGAAAACCGTGGGCGATTCACCAACGCAATAGCCGGTAAAACCCCGCCAACCACGGGCCAGATGGGCCATCAGGCGTGTTTCAGCGGCGCCCgg > 1:5812119/1‑150 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGTTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 1:9076806/150‑1 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 2:2678163/150‑1 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 2:2131276/150‑1 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 2:5228822/150‑1 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAACCCCGAATACGGTGGTCGATGCACCAACGCATTCGCGGGTAAACCCGCAACTAACACGGGCCAAATGGGCCTTCAGGCGTGTTTCATCGGCTCGCGGATc > 1:5165899/1‑150 (MQ=255) ttttATATAACCATTTAAGAGAACGCGCCTCTGGTAGGAGC‑GGGTTTTACCCCGAAAAACGTGGTCGATGCACCAAAGCCTAAGCCGGTAAAACCCCACCAACCAAGGGCCCAAATGGCCATAAGGCCTGTTTTTGCGGCGCGCgggtat > 1:6288230/1‑146 (MQ=255) taACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCa < 2:5702608/150‑1 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATAAGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCCCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg > 2:200790/1‑150 (MQ=255) cATTTACGAGAACCCGCCTCTGGTTGGAGC‑GGGTTTACCCGCTAATACGGTGGTCGATGCCCCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGcc < 2:706/150‑1 (MQ=38) acgagaCCCCGCCTGGGGTAGGCGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCAGCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTa < 2:5831930/148‑1 (MQ=38) aaCACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCGTCAGGCGTGTTTCTGCGGCGCGCGGATCTTGTACCCGGCCACGTCCAgcg > 2:5644868/1‑150 (MQ=255) aaCACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGAGGCACCATCGCCATCGCGGGGAAACCCGCGCCGACCCGGGGCCCGCGGGGCCGTCAGGCGGGTTTCGGCGGCACGCGGATCGTGTGCCCGGCCCCGGACAgcg > 2:1072483/1‑150 (MQ=255) acGCCTCTGGTAGGAGC‑GGGGTTAACCGCGAATACGGTGGTCGATGCACCATCGCAATCGCGGGTAAACCCCCTCCGACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTTTAACAGGCCACGTACAGCGCCg > 1:2976087/1‑150 (MQ=255) ctgtGGTCGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGAAACCCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAg < 1:7356338/147‑1 (MQ=255) ctGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGa < 2:7003467/150‑1 (MQ=255) gTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCCTCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAca < 2:8798773/150‑1 (MQ=255) gTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATCCACCATCGCATTCGCGGTTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAca < 1:1423786/150‑1 (MQ=255) tcggcgC‑GGGTTTCCCCGCTAATAGGGTGGTCGATGCACCATCGATTTCGCGGTAAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcag < 1:7029733/145‑1 (MQ=255) tAGGAGC‑GGGTTTACCCGCTAATACGGTGGTCGATGCACCATCGCATTCGCGGTTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcag < 2:5401090/150‑1 (MQ=255) aGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACagcagc < 2:7629181/150‑1 (MQ=255) tACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCaa > 2:1554437/1‑150 (MQ=255) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCg > 2:8832238/1‑89 (MQ=14) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCg < 1:8832238/89‑1 (MQ=14) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:7139244/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1902247/1‑150 (MQ=25) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:3880198/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:6383061/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:2112917/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:7207346/1‑150 (MQ=255) cgcgAATCCGGTGGGCGCTCCACCAGCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc < 1:3494680/150‑1 (MQ=255) cgcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 2:2069406/1‑150 (MQ=255) gcgAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:331475/1‑150 (MQ=37) gcgAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 2:3140336/1‑150 (MQ=255) aCGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 2:7701644/150‑1 (MQ=255) ggtggtCGATGCACCATCGCATTCGCGGGTCAACCCGCTCCTACCAGGGGCCATATGGGCCTTCGGGCGTGTTGCTGCGGCTCGCGGATCGTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 2:8118639/1‑150 (MQ=255) ggtggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCAGATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 2:3599549/1‑150 (MQ=255) ggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATc < 2:5873063/150‑1 (MQ=255) gtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATcc > 2:7466893/1‑150 (MQ=255) gtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATcc > 2:2889542/1‑150 (MQ=255) tCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATccc < 2:6205103/150‑1 (MQ=255) tCGATCAACCATCGATTTCGCGGCTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATccc < 1:3138440/150‑1 (MQ=255) cGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCg < 2:8032023/150‑1 (MQ=255) | GGCAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCG > NC_002947/5899607‑5899905 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |