| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,899,757 | G→C | 12.1% | intergenic (‑179/+55) | PP_5172 ← / ← PP_5173 | hypothetical protein/RND family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,899,757 | 0 | G | C | 12.1% | 599.0 / 63.5 | 215 | intergenic (‑179/+55) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| Reads supporting (aligned to +/- strand): ref base G (91/97); new base C (7/19); total (98/117) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.73e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.47e-01 | |||||||||||
Only 100 of 219 total aligned reads displayed.
CAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCG > NC_002947/5899609‑5899905 | cAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGa < 1:6205000/150‑1 (MQ=255)cAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTAAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGa < 2:2105824/150‑1 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTTCCCCCG‑AAAACCGGGGTCGAt > 1:8032023/1‑150 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGAt < 2:8288876/150‑1 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGAt > 2:5246054/1‑150 (MQ=255) agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGAt > 1:8339929/1‑150 (MQ=255) agGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGc > 2:3374008/1‑150 (MQ=255) ttGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCa < 1:35821/150‑1 (MQ=255) aaGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCg > 2:3138440/1‑150 (MQ=255) ggggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATcaca > 1:971708/1‑150 (MQ=255) ggggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCa < 1:2892846/150‑1 (MQ=255) gggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCCCG‑AATAAGGTGGTCGATGCACCATCGCAt > 2:3036861/1‑150 (MQ=255) gTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGGTTTACCCCCC‑AA‑AAGGTGGTCGCATCACCAGAGCAtta > 1:3030864/1‑149 (MQ=255) ttttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATAAGGTGGTCGATGCACCATAGCATTcg > 2:4605007/1‑150 (MQ=255) ttGCGCCTGGCTTGAGGGCACTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTcgcg < 2:5560018/150‑1 (MQ=25) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTcgcg < 2:7014522/150‑1 (MQ=37) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTcgcg < 1:1439329/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGTATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:1581254/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:5136772/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:2357530/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:4149537/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:3575976/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:3475165/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:5571383/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:177000/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGAAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAACAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:7954584/150‑1 (MQ=255) gcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAACCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTa > 2:1423786/1‑150 (MQ=255) ggCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGTATTCGCGGGTAAA‑cc < 1:8947558/150‑1 (MQ=255) gCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑ccc < 2:1825920/150‑1 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGc < 2:8898291/150‑1 (MQ=25) tgggCAATAGTCTTGAGGCGGTATTATTCTTAAAAATACTGTTTAAGATTTTTTATATAACCATTTAAGAGAACACCCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTcc < 2:7044180/149‑1 (MQ=18) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTa > 2:4837623/1‑150 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAACCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTa > 2:2720996/1‑150 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTGTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGGTTAACCGCGTAAAACGG‑GGTCGATGCACCCAAGCAATCTCCGGGAAA‑CCCGCGcccc > 1:6515826/1‑148 (MQ=255) tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCCCCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAgg < 2:8214377/150‑1 (MQ=255) tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAgg > 2:5058302/1‑150 (MQ=255) agtagtGAGGCGGTATTATTCTTAAAAATACTGTTTAAGAATTTTAATATAACCATTTAAGCGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGTTGCACCATCGCATTCGCGGTTAAA‑CCCGCTCCTACCAggg < 2:7682038/150‑1 (MQ=38) agtagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAAACGCG‑AATACCGTGGTCGATTCACCATAGCAATCGCGGGTAAA‑ACCCCTCCAACCAggg > 1:6317822/1‑150 (MQ=255) tagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACCGTGGTAGATGCACCAACGCATTCGCGGGTAAA‑CCCCCTCCTACCAGGGGc > 2:4666238/1‑150 (MQ=255) gCGGTATTTTTCTTAAAAATACTGTTTAATAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCTTTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATgg < 2:6570135/150‑1 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGGGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGa < 1:3336147/101‑1 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATgg > 1:7629181/1‑150 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GCGTTTACCCGCG‑AATACGGTGGTCGATGCACCCTCGCATTCGCGGGTCAA‑CCCGCTCCTACCAGGGGCCATATgg > 1:4672963/1‑150 (MQ=255) attattCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATAGGGTGGTCGATGCACCAGCGATTGCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCtt < 2:2421043/150‑1 (MQ=38) tattatTAAAAATACTGTTAAAGATTTTTTATATAACCTTTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCa < 2:1128194/150‑1 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:7620623/108‑1 (MQ=18) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCAccgtat < 2:6988321/99‑5 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCgt > 2:5229843/1‑150 (MQ=255) aTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATAAGGTGGTCGATGCACCAACGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCCTATGGGCCTTCAGGCGTGTTTCt > 2:8653785/1‑150 (MQ=255) tACTTTTTAACAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTTGGAGC‑GGGTTTACCCGCT‑AATACGGTGGTCGATGCACCATCGCATTCGCGGTTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTg < 2:845365/150‑1 (MQ=255) attttttAATATTTTTTATAAAACATTTTACGACAACACGCCTGTGTTTGGCGG‑GGTTTTACCCGCG‑AATAGGGTGGTCGAGGCCCATTCGCATTCGCGGTTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGc < 1:2781324/146‑1 (MQ=255) tttttACGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTTGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAC‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCgg < 2:7660381/148‑1 (MQ=255) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTcgc < 1:1070061/94‑1 (MQ=14) ttAAGAATTTTTATATAACCATTTAAGAGAACCCGCCTCGGGTAGGAGC‑GGGTTTACCCGCG‑AATCCGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTc < 2:227951/150‑1 (MQ=255) ttAAGAATTTTTATATAACCATTGAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTc < 2:5839974/150‑1 (MQ=255) tAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAACCCCG‑AATACGGTGGTCGATGCACCAACGCATTAGCGGGTAAA‑ACCGCTCCTACCAGGGGCCAAATGGGCCATCAGGCGTGTTTATGCGGCTcg > 1:4484237/1‑150 (MQ=255) ataaTTTTTATATAACAATTTAACACAACACGCCTCTGGTAGGAGC‑GGTTTTACCCGCC‑AATACGGTGGTCGATGAACCATCGCATTCGCGGTTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcgcg < 2:1589587/148‑1 (MQ=255) aGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcgcg < 2:514491/150‑1 (MQ=255) gAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTTCCCGCG‑AAAACCGTGGGCGATTCACCAACGCAATAGCCGGTAAA‑ACCCCGCCAACCACGGGCCAGATGGGCCATCAGGCGTGTTTCAGCGGCGCCCgg > 1:5812119/1‑150 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 2:2678163/150‑1 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAACCCCG‑AATACGGTGGTCGATGCACCAACGCATTCGCGGGTAAA‑CCCGCAACTAACACGGGCCAAATGGGCCTTCAGGCGTGTTTCATCGGCTCGCGGATc > 1:5165899/1‑150 (MQ=255) tttttAAAAAACAATTTAAGACACCACGCCTCTGGTAGGCGG‑GTTTTTACCGGCT‑AATAGGTTGTTCGATGCACCATCGAATCCG‑GGGTAAACCCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 1:2642095/150‑1 (MQ=255) ttttATATAACCATTTAAGAGAACGCGCCTCTGGTAGGAGC‑GGGTTTTACCCCG‑AAAAACGTGGTCGATGCACCAAAGCCTAAGCCGGTAAA‑ACCCCACCAACCAAGGGCCCAAATGGCCATAAGGCCTGTTTTTGCGGCGCGCgggtat > 1:6288230/1‑146 (MQ=255) tttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTAACCGCG‑AAAACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCAACCAGGGGCCAAATGGGCCTTCAGGCGTGTTTATGCGGCTCGCGGATCtt > 1:6047669/1‑150 (MQ=38) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCGCCTACCAGGGGCCATATGGGCCATCAGGCGGGTTTCTGCGGCTCGCGGATCTTTTACAAg > 2:5716211/1‑150 (MQ=38) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATAAGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCCCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg > 2:200790/1‑150 (MQ=255) aaCACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑CATACGGGGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCAGATGGGCCTTCAGGCGGGTGTCTGCGGCTCGCGGCTCTTGTACCAGGCCACGTACAgcg > 2:5644890/1‑150 (MQ=38) aaCACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGAGGCACCATCGCCATCGCGGGGAAA‑CCCGCGCCGACCCGGGGCCCGCGGGGCCGTCAGGCGGGTTTCGGCGGCACGCGGATCGTGTGCCCGGCCCCGGACAgcg > 2:1072483/1‑150 (MQ=255) acGCCTCTGGTAGGAGC‑GGGGTTAACCGCG‑AATACGGTGGTCGATGCACCATCGCAATCGCGGGTAAA‑CCCCCTCCGACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTTTAACAGGCCACGTACAGCGCCg > 1:2976087/1‑150 (MQ=255) ctgtGGTCGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGAAAC‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAg < 1:7356338/147‑1 (MQ=255) tctGGTAGGAGC‑GGGTTTACCCGCG‑ACTACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTTCGGCTCGCGGATCTTTTACCAGGCCACGTACAGCGccggccgg > 2:7069500/1‑150 (MQ=255) gTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCCTCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAca < 2:8798773/150‑1 (MQ=255) gTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATCCACCATCGCATTCGCGGTTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAca < 1:1423786/150‑1 (MQ=255) tcggcgC‑GGGTTTCCCCGCT‑AATAGGGTGGTCGATGCACCATCGATTTCGCGGTAAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcag < 1:7029733/145‑1 (MQ=255) aGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACagcagc < 2:7628507/150‑1 (MQ=255) aGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACagcagc < 2:6401974/150‑1 (MQ=255) ccGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCg > 2:8832238/1‑89 (MQ=14) ccGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:7139244/1‑150 (MQ=25) ccGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1902247/1‑150 (MQ=25) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:622822/1‑150 (MQ=255) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:968244/1‑150 (MQ=255) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:6160820/1‑150 (MQ=255) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:6103954/1‑150 (MQ=255) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:6780860/1‑150 (MQ=255) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:3880198/1‑150 (MQ=255) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:2112917/1‑150 (MQ=255) cgcg‑AATCCGGTGGGCGCTCCACCAGCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc < 1:3494680/150‑1 (MQ=255) cgcg‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc < 2:6850531/150‑1 (MQ=255) gcg‑AATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 2:3806046/1‑150 (MQ=37) gcg‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 2:3140336/1‑150 (MQ=255) aaTACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCa > 1:3280387/1‑150 (MQ=255) tACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACg < 2:294346/150‑1 (MQ=255) aCGGTGGTCGATGCACCATCGCAGTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 2:7701697/150‑1 (MQ=255) ggtggtCGATGCACCATCGCATTCGCGGGTCAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCGGGCGTGTTGCTGCGGCTCGCGGATCGTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 2:8118639/1‑150 (MQ=255) ggtggtCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCGGCGTCTGCAAGGTCGCCCCgagg > 2:7440073/1‑148 (MQ=255) ggtggtCGATGCACCATCGCAGTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 2:3599557/1‑150 (MQ=255) gtCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATcc > 2:7466897/1‑150 (MQ=255) tCGATGCACCCTCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATccc < 2:4502031/150‑1 (MQ=255) cGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCg < 2:8032023/150‑1 (MQ=255) gATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc < 2:2476412/134‑1 (MQ=255) | CAGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGC‑GGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCG > NC_002947/5899609‑5899905 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |