| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,899,766 | T→C | 13.2% | intergenic (‑188/+46) | PP_5172 ← / ← PP_5173 | hypothetical protein/RND family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,899,766 | 0 | T | C | 13.2% | 523.8 / 56.3 | 221 | intergenic (‑188/+46) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| Reads supporting (aligned to +/- strand): ref base T (82/94); new base C (7/20); total (104/117) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.98e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.69e-02 | |||||||||||
Only 100 of 226 total aligned reads displayed.
GAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGG > NC_002947/5899618‑5899915 | gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATc < 1:574207/150‑1 (MQ=255)gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATc < 1:3600486/150‑1 (MQ=255)gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATc < 1:7412640/150‑1 (MQ=255) ggggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCa > 2:8061502/1‑150 (MQ=255) gggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTTCCCGCG‑AATACGGTGGTCGATGCACCATCGCAt > 2:3036735/1‑150 (MQ=255) gggTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCAt > 2:3037365/1‑150 (MQ=255) ttttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTcg < 2:8453508/150‑1 (MQ=255) ttttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATAAGGTGGTCGATGCACCATAGCATTcg > 2:4605007/1‑150 (MQ=255) tttGCGCCTGTCTTGAGGGCAATAGTAGAGAGGCGTTATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCAATTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTcgc < 2:5111976/150‑1 (MQ=39) ttGCGCCTGGCTTGAGGGCACTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTcgcg < 2:5560018/150‑1 (MQ=25) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTcgcg < 2:1976237/150‑1 (MQ=37) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTcgcg < 2:7014522/150‑1 (MQ=37) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTcgcg < 1:1439188/150‑1 (MQ=255) tgtgcCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:3828108/147‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCgg < 2:6592079/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:3575976/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:5571383/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:8515521/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCgg < 2:177000/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:1520929/150‑1 (MQ=25) cTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTaaa > 1:5873063/1‑150 (MQ=255) tGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑c < 2:6865024/150‑1 (MQ=255) ggCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGTATTCGCGGGTAAA‑cc < 1:8947558/150‑1 (MQ=255) gCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑ccc < 2:1825920/150‑1 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGc < 2:8898291/150‑1 (MQ=25) tgggCAATAGTCTTGAGGCGGTATTATTCTTAAAAATACTGTTTAAGATTTTTTATATAACCATTTAAGAGAACACCCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTcc < 2:7044180/149‑1 (MQ=18) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGTACACGCCTCTGGTAGGAGCGGGTTTAACCGCG‑AATACGGTGGTCGATGCACCATCGCATTAGCGGGTAAA‑CCCGCACCTa > 1:3015212/1‑150 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTa > 2:6552152/1‑150 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAAAACGCCTCTGGTAGGAGCGGGTTTAACCCCG‑AATACCGTGGTGGATGGAACATCGCAGTCGCCGGTAAA‑CCCCCTccaa > 1:7990189/1‑148 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTGTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGGTTAACCGCGTAAAACGG‑GGTCGATGCACCCAAGCAATCTCCGGGAAA‑CCCGCGcccc > 1:6515826/1‑148 (MQ=255) aaTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACACCCG‑AATACGGTGGTCGATGCACCAACGCATTCGCGGGTAAA‑CCCGCTCCTACCa > 1:613616/1‑150 (MQ=255) tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCCCCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑gg < 2:8214377/150‑1 (MQ=255) agtagtGAGGCGGTATTATTCTTAAAAATACTGTTTAAGAATTTTAATATAACCATTTAAGCGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGTTGCACCATCGCATTCGCGGTTAAA‑CCCGCTCCTACCA‑ggg < 2:7682038/150‑1 (MQ=38) gAGGCGGGATTATAAATAAAAATACTCTTAAACAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGCAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGCTAAA‑CCCGCTCCTACCA‑GGGGCCata < 2:8020514/150‑1 (MQ=38) gCGGTATTTTTCTTAAAAATACTGTTTAATAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCTTTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATgg < 2:6570135/150‑1 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATgg > 1:7629181/1‑150 (MQ=255) attattCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATAGGGTGGTCGATGCACCAGCGATTGCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCtt < 2:2421043/150‑1 (MQ=38) ttattCTTAAAAATACTGGTTAAGAATTTTTATAGAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTGTTCCCCCG‑CCTAAGGTGGTCGAGGCACCCGAGCCTTCGCGGGGGCA‑CCCGCGCCTACCA‑GCGGCCCGATggggcggc > 1:5055548/1‑145 (MQ=255) tattatTAAAAATACTGTTAAAGATTTTTTATATAACCTTTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCa < 2:1128194/150‑1 (MQ=255) tattCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTGTACACGCG‑CATAAGGTGGTCGTTTGACCAAACCATTAGCCGGTAAA‑ACCCCTACAACAACGGGGCCAAAGGGGcgtaa > 1:1178634/1‑146 (MQ=255) tCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACCCGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGc < 2:3405783/150‑1 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCgg < 1:7620623/108‑1 (MQ=18) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCgg > 2:7620623/1‑108 (MQ=18) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCgt > 2:2701404/1‑150 (MQ=255) tGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCC‑AAAACGGTGGTCGATGCACCATCGCATTCGCCGGTAAA‑CCCCCTCCTACCA‑GGGGCCAAAAGGGCCATCAGGCGTGTTTATTCgg > 1:2885225/1‑150 (MQ=255) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATGCGATGGTGCATCGACCACCGTATTcgc > 2:1070061/1‑94 (MQ=14) ttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTc < 2:5231702/150‑1 (MQ=255) ttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCGTCAGGCGGGTTTCTGCGGCTc > 2:6325116/1‑150 (MQ=255) ttAAGAATTTTTATATAACCATTGAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTc < 2:5839974/150‑1 (MQ=255) tgaaGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATAGGGTGGTCGATGCCCCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTc < 2:4791944/148‑1 (MQ=255) tcaatatttttaATAAAACCATTTCAGACACCCCGCCTCTGGTCGGCGCGGGTTTACCCGCG‑AATCCGGTGGTCGATGCACCATCGCATTCGGGGGAAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTc < 1:7082576/143‑1 (MQ=255) tAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AAAAAGGTGGGCGATGCACCATCGCATTAGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATAGGGGCCTTCAGGCGTGTTTCTGCGGCTcg > 1:6081098/1‑150 (MQ=39) tAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCCCG‑AATACGGTGGTCGATGCACCAACGCATTAGCGGGTAAA‑ACCGCTCCTACCA‑GGGGCCAAATGGGCCATCAGGCGTGTTTATGCGGCTcg > 1:4484237/1‑150 (MQ=255) ataaTTTTTATATAACAATTTAACACAACACGCCTCTGGTAGGAGCGGTTTTACCCGCC‑AATACGGTGGTCGATGAACCATCGCATTCGCGGTTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcgcg < 2:1589587/148‑1 (MQ=255) aGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcgcg < 2:514491/150‑1 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 2:2131276/150‑1 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 2:2053433/150‑1 (MQ=255) tttttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCCCG‑AATACGGTGGTCGATGCACCAACGCATTCGCGGGTAAA‑CCCGCAACTAACA‑CGGGCCAAATGGGCCTTCAGGCGTGTTTCATCGGCTCGCGGATc > 1:5165899/1‑150 (MQ=255) tttttAAAAAACAATTTAAGACACCACGCCTCTGGTAGGCGGGTTTTTACCGGCT‑AATAGGTTGTTCGATGCACCATCGAATCCG‑GGGTAAACCCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATc < 1:2642095/150‑1 (MQ=255) ttttATATAACCATTTAAGAGAACGCGCCTCTGGTAGGAGCGGGTTTTACCCCG‑AAAAACGTGGTCGATGCACCAAAGCCTAAGCCGGTAAA‑ACCCCACCAACCA‑AGGGCCCAAATGGCCATAAGGCCTGTTTTTGCGGCGCGCgggtat > 1:6288230/1‑146 (MQ=255) atataACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTa < 2:4959498/150‑1 (MQ=255) taACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCa < 2:5702608/150‑1 (MQ=255) gagaACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACa < 2:1487128/150‑1 (MQ=255) aaCACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑CATACGGGGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCAGATGGGCCTTCAGGCGGGTGTCTGCGGCTCGCGGCTCTTGTACCAGGCCACGTACAgcg > 2:5644890/1‑150 (MQ=38) aaCACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGAGGCACCATCGCCATCGCGGGGAAA‑CCCGCGCCGACCC‑GGGGCCCGCGGGGCCGTCAGGCGGGTTTCGGCGGCACGCGGATCGTGTGCCCGGCCCCGGACAgcg > 2:1072483/1‑150 (MQ=255) tctGGTAGGAGCGGGTTTACCCGCG‑ACTACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTTCGGCTCGCGGATCTTTTACCAGGCCACGTACAGCGccggccgg > 2:7069500/1‑150 (MQ=255) gtcggAGCGGGTTTACCCGCG‑AATAGGGTGGTCGCTGCACCATCGCATTCGCGGGTAAC‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAca < 1:4443775/147‑1 (MQ=255) gTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCCTCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAca < 2:8798773/150‑1 (MQ=255) aGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACagcagc < 2:7629181/150‑1 (MQ=255) aGCGGGTTTACCCGCG‑AATACGGGGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACagcagc < 2:4199532/150‑1 (MQ=255) ccGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCg < 1:8832238/89‑1 (MQ=14) ccGCG‑AATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCg > 2:8832238/1‑89 (MQ=14) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTTCCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:6318186/1‑150 (MQ=255) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:6780860/1‑150 (MQ=255) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:8762072/1‑150 (MQ=255) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:1718821/1‑150 (MQ=255) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:2290627/1‑150 (MQ=255) ccGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:968310/1‑150 (MQ=255) cgcg‑AATCCGGTGGGCGCTCCACCAGCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc < 1:3494680/150‑1 (MQ=255) gcg‑AATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:331475/1‑150 (MQ=37) gcg‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:7279101/1‑150 (MQ=255) gcg‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 2:3139962/1‑150 (MQ=255) gccaaTTCGGTGGTCTAGGCACCACCGCTTCCGCGGGAAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg < 1:3036735/147‑1 (MQ=255) aaTACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCa > 1:294346/1‑150 (MQ=255) aCGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 2:7701644/150‑1 (MQ=255) ggtggtCGATGCACCATCGCAGTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 2:3599557/1‑150 (MQ=255) gtCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATcc > 2:2889542/1‑150 (MQ=255) gtCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATcc > 2:7466893/1‑150 (MQ=255) tCGATGCACCCTCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATccc < 2:4502031/150‑1 (MQ=255) tCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATccc < 2:6205103/150‑1 (MQ=255) gATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc > 1:2476412/1‑134 (MQ=255) gATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc < 2:2477034/134‑1 (MQ=255) aTGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGcc > 1:3561120/1‑150 (MQ=255) tGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCa > 2:6151691/1‑150 (MQ=255) ccATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCa < 2:2469539/150‑1 (MQ=255) cATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCAt > 2:3482130/1‑150 (MQ=255) cATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCAt > 2:8283294/1‑150 (MQ=255) aTCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGGTCGCGGATCTTGTAGCAGGGCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGTTCCCGCCAATCATg > 2:7405185/1‑150 (MQ=255) aTCGAATTCGCGGTTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATg < 1:4082727/150‑1 (MQ=255) tCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATgg > 1:1050643/1‑150 (MQ=255) | GAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCG‑AATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAA‑CCCGCTCCTACCA‑GGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGG > NC_002947/5899618‑5899915 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |