| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,905,143 | A→C | 17.8% | intergenic (‑129/‑139) | PP_5175 ← / → PP_5176 | HlyD family secretion protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,905,143 | 0 | A | C | 17.8% | 464.9 / 77.2 | 231 | intergenic (‑129/‑139) | PP_5175/PP_5176 | HlyD family secretion protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (72/110); new base C (27/14); total (107/124) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.91e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.42e-01 | |||||||||||
Only 100 of 237 total aligned reads displayed.
CAGCGGACGCATCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGAATGCCACCGA > NC_002947/5904994‑5905291 | cAGCGGACGCATCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGa < 1:3311753/150‑1 (MQ=255) cGCATCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCcgcg < 1:1702510/150‑1 (MQ=255) gCATCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGa < 1:4009507/150‑1 (MQ=255) gCATCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTAGGGGGCGTGGCcgcgg > 2:3873728/1‑149 (MQ=255) cATCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCTCGCCCGCGaa < 2:4413099/150‑1 (MQ=255) cATCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCCGCGGGGGCCTCTTCGCGGGCGAGCCCGCGaa < 1:4423395/150‑1 (MQ=255) aTCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCTCGCCCGCGAag < 1:5464827/150‑1 (MQ=255) aTCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCCCGAag > 2:8616100/1‑150 (MQ=255) tCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAaga < 2:2127552/150‑1 (MQ=255) tCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAaga < 2:1692128/150‑1 (MQ=255) tCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAaga < 1:5910851/150‑1 (MQ=255) tCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATGTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAaga > 2:6056362/1‑150 (MQ=255) cAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAagag < 1:7181243/150‑1 (MQ=255) cAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAagag < 1:6214300/150‑1 (MQ=255) aaCGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCCCGAAGAgg > 2:5374931/1‑150 (MQ=255) aaCGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCGCGTCGCGGGCGCGCCCCCGCAGAgg > 2:1625419/1‑150 (MQ=255) aCGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGc > 2:2902795/1‑150 (MQ=255) gCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTATTGGTGCCTGCGGGGGCCGCATCGCGGGCGAGCCCCCGAAGAGGcgg > 2:286958/1‑148 (MQ=255) cTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAg > 2:1392971/1‑150 (MQ=255) cTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTAGTCGCGGGCGAGCCCCCGAAGAGGCCGCcacaa > 2:1937859/1‑149 (MQ=255) tGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCGCGTAGCGGGCGCGCCCCCCCAGAGGCCGCcccacc > 1:1973946/1‑148 (MQ=255) ccTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGt < 2:2967486/150‑1 (MQ=255) ccTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTAGCGGGCGAGCCCGCGAAGAGGCCACCACACCCaatt > 2:2720854/1‑147 (MQ=255) ccTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCGCTTCGCGGGCGAGCCCGCGAAGAGGCCACCACACCCAGGt > 2:2375534/1‑150 (MQ=255) cttgcttgTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCGGCGAAGAGGCCTCCACAGCCATGTa > 2:661887/1‑150 (MQ=255) gcttgTGCACAAATGATGTGGGGGAGGCGCCTGTGAGCGTAGTTCAGGGTTCGATACACATCACTGCCGGGGGCCCTGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCa < 1:5339212/150‑1 (MQ=255) aaaTGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCCGGCGACCCCGCCAAGAGGCCTCCACAGCCAAGTATCAGTATCTGCCa > 2:4814345/1‑150 (MQ=255) aaaTGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCACGTCGCGGGCGCGCCCCCCAAGAGGCCCCCACAGCCAAGTAAAAGTaaaatccc > 1:5147098/1‑143 (MQ=255) aaTGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGGGCCCGCGAAGAGGCCACCACAGCCAAGTATCAGTAACTGCCaa > 2:2818859/1‑149 (MQ=255) gATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCCCGAAGAGGCCTCCACAGCCATGTATCAGTATCAGCCATATc > 2:5126624/1‑150 (MQ=255) ttttGTGGTATGCGCCTGTTTGGTTATTTCTGGGTTCTATAAACATAACTGCGGGGGGCCTTGCTGGAATTTTTGGTGCCTGGGGGGGCCTCTTCGCGGGGGCGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATcc < 1:4818374/149‑1 (MQ=255) ctttGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATACACAGCACTGACGGGGGCCATGCTGGCAGTTTTGGTGCCTGGGGGGGCCTCTGCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATcc < 2:6533823/149‑1 (MQ=255) tttGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCACTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCa < 2:8707686/150‑1 (MQ=255) ttGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGTCTCCACAGCCATGTATCAGTATCTGCCATATCCAg > 2:8023733/1‑150 (MQ=255) ggATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAAcc > 2:675496/1‑150 (MQ=255) tGCGAGTGTGAGCGTTGTTCTGGGTTCGATAAACATCACTGAGGGGGGCCATGCT‑GTATTTTTGGTGCCGGCGGGGGCCTCTTGGCGGGCGCGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCa < 1:5598173/150‑1 (MQ=255) gCGACTGTGAGCGTTGTTCAGGTTTCTATAAACATCACTGACGGGGGCCTTGCTGGAATTTTTGGTGCCTGGGGGGGCCTGTTCGCGGGCGAGCCCGCTAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCa < 1:597739/150‑1 (MQ=255) ttAGTTCTGGGTTCTATAAACATCACTGCGGGGGGCATTGCTGCATTTTTTGGTGCCTGGGGGGGCCTCTCCGCGGGCGCGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCAt < 1:2537407/149‑1 (MQ=255) tAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATc < 2:5566613/150‑1 (MQ=255) tgTTCAGGGTTCGATAAACATCACTGACGGGGGCCAGGCGGGCATTTTTGGTGCCTGCGGGGGCCGCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCCGAAACCCTCAGGCATCGG‑CCATcc < 2:6890887/149‑1 (MQ=255) ttCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCGTCGCGGGCGATCCCGCGGAGAGGCCGCCACAGCCATGTATCAGGATATTCCCTATACAGAAAACATAAGGCAACGG‑cccaaccc > 2:3422868/1‑144 (MQ=255) gggTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTc < 2:7367831/150‑1 (MQ=255) ggTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCGTCGCGGGCGGGCCCCCGAAGAGGCCGCCACAGCCCAGTATCAGTATCTTCCAAATACAGAAACCCACACGCCTCGGCCCACCCCCGtcc > 1:7530688/1‑148 (MQ=255) tAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTAATAGCGGGCGAGCCCCCCTAGAGGCCGCCACACCCATTTATAAATATATTGCATATACAGAAAACAAAAGGCAAACG‑CCAACCCCCGTACAAccccg > 2:4285518/1‑147 (MQ=255) aaCATCACTGACGGGGGCCATGCTGGCTTTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTAc < 2:3617117/150‑1 (MQ=255) cATCACTGCCGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGCGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCt < 2:380884/150‑1 (MQ=255) aCTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTca < 2:4019440/150‑1 (MQ=255) aCTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTca < 2:5678120/150‑1 (MQ=255) aCTGACGGGGGCCATGCTGGAATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTca < 2:2639563/150‑1 (MQ=255) tGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTcaca < 2:7335352/150‑1 (MQ=255) gACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTATTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAg < 2:600716/150‑1 (MQ=255) gggggCAATGCTGGCATTTTTGGTGCCTGGGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGa < 1:3227152/150‑1 (MQ=255) gggCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAgg < 1:2818859/150‑1 (MQ=255) gCCATGCTTGAATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCTAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCACAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCt < 2:8474199/150‑1 (MQ=255) gCCATGCTGGCATTTTGGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTGTCACAGGGAGGCt < 2:7678782/150‑1 (MQ=255) cTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAACAGGCCTCCCCACCCAAGTATCAGTATCTGCCCTATACAGAAAACAACAGGCAACGG‑CCAAACCCCGTCCAACCGCTACCATTCACAGGGAGGCTcacaat > 2:2033646/1‑148 (MQ=255) cTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCCCGAAGAGGCCTCCACAGCCATGTATCAGGATCTGCCAAATCCAGAAAACAACAGGCATCCG‑CCATCCCCCGTCCAACCGCAAACATTCACAGGGAGGCTcacaat > 2:2231786/1‑148 (MQ=255) gcttttttGGTGCCGGCGGGGGCCTCTGCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCaa < 1:8718153/147‑1 (MQ=255) gaaTTTTTGGTGCCTGCGGTGTCCTCTTCGCGGGCGAGCCCGCGAAGAGTCCTCCACAGCCATGTATCAGTATCTGCCATATCAAGAATCCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCaa < 2:6103142/148‑1 (MQ=255) gCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCaa < 1:8179501/150‑1 (MQ=255) gCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCaa < 2:8918434/150‑1 (MQ=255) gCATTTTTGGTGCCTGCGGGGGCCTCTACGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCTTTTATCAGTATCTGCCATATCCAGATACCATCAGGCATCGG‑CCATCCCCGTTACAACCGCTACCTTTCACAGGGAGGCTCACATTCaa < 2:5236179/150‑1 (MQ=255) gCATTTTTGGGGCCGGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCaa < 2:6932606/150‑1 (MQ=255) aTTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAgg < 2:5729305/150‑1 (MQ=255) aTTTTTGGTGCCTGCGGGGGCCACATAGCCGGCGAGCCCGCGAAGAGGCCAACACAGCCATGTATAAGTATAATCCATAAACACAAACCAACAGGCAACGG‑CCAACCCCCGTCCAAACCCAACCATTAACAGGGAGGCACACAATAAAgg > 2:3744300/1‑150 (MQ=255) tttttGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGa < 1:6900115/150‑1 (MQ=255) ttttGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCGGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGaa < 1:661887/150‑1 (MQ=255) tacatggcTGTGGAGGCCTCTTCGCGGGCTCGCCCGCGAAGAGGCCCCCGCACGCAGGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCCTTCCAACCGCTACCGTTCACAGGGAGGCTCACAATAAAGGAAGa > 2:7717281/8‑150 (MQ=21) gCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCaaa < 2:3739194/150‑1 (MQ=255) cTGGGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAAt < 1:370212/150‑1 (MQ=255) cTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAAt < 2:1042756/150‑1 (MQ=255) cGGGGGCCTCTTCGCGGGCGCGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGcc < 2:2509514/150‑1 (MQ=255) cGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGcc < 1:5843932/150‑1 (MQ=255) ggggCCTCTTCGCGGGCGAGCCCGCTAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGt < 1:4131506/150‑1 (MQ=255) ggggCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGt < 2:1973946/150‑1 (MQ=255) gCCTCTTCGCGGGCGAGCCCGCTAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAg < 1:4602055/150‑1 (MQ=255) gCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAg > 2:5000408/1‑150 (MQ=255) ctctTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGcc < 2:7004658/150‑1 (MQ=255) tctTCGCGGGCTCGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCgg < 1:8275934/79‑1 (MQ=255) tctTCGCGGGCTCGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCg > 2:4612191/1‑150 (MQ=255) tctTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCg > 1:9133021/1‑150 (MQ=255) tctTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCg > 1:3607979/1‑150 (MQ=255) ctTCGCGGGCTCGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGa > 1:8519553/1‑150 (MQ=255) ctTCGCGGGCTCGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGa > 1:5560111/1‑150 (MQ=255) ctTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGa > 1:4189327/1‑150 (MQ=255) ttCGCGGGCTCGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGaa > 2:2409941/1‑150 (MQ=255) ttCGCGGGCTCGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGaa > 1:134974/1‑150 (MQ=255) ttCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGaa > 1:7738536/1‑150 (MQ=255) ttCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGaa > 2:6223330/1‑150 (MQ=255) ttCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGaa > 1:1398374/1‑150 (MQ=255) tCGCGGGCTCGCCCGCGAAGAGGCCCCCGCAGCCATGTATCAGTATCTGCCATAACCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAAAGCCGTTAGCCGAAt > 2:7456090/1‑150 (MQ=255) tCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGAAt < 2:8318142/150‑1 (MQ=255) gcgGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGAATGc > 2:1121691/1‑150 (MQ=255) gcgGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGAATGc > 1:6431728/1‑150 (MQ=255) gcgGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGAATGc > 2:7851082/1‑150 (MQ=255) gcgGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGAATGc > 2:6717748/1‑150 (MQ=255) gggCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGAATGCCa > 1:287528/1‑150 (MQ=255) gCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGAATGCCAcc > 1:7629072/1‑150 (MQ=255) gAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATGTCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGAATGCCACCGa > 2:5869890/1‑150 (MQ=255) gAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGACGATCAAAATGCCGTTAGCCGAATGCCACCGa > 2:7949026/1‑150 (MQ=255) | CAGCGGACGCATCAACGCCATGCTGGCTCCTTGCTTGTGCACAAATGATTTGTGGGATGCGACTGTGAGCGTAGTTCAGGGTTCGATAAACATCACTGACGGGGGCCATGCTGGCATTTTTGGTGCCTGCGGGGGCCTCTTCGCGGGCGAGCCCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGG‑CCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGAATGCCACCGA > NC_002947/5904994‑5905291 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |