| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 85,081 | T→G | 8.6% | intergenic (+59/+71) | aroE → / ← PP_0075 | shikimate 5‑dehydrogenase/choline sulfate transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 85,081 | 0 | T | G | 8.6% | 667.9 / 36.5 | 248 | intergenic (+59/+71) | aroE/PP_0075 | shikimate 5‑dehydrogenase/choline sulfate transporter |
| Reads supporting (aligned to +/- strand): ref base T (117/108); new base G (14/9); total (131/117) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.25e-01 | |||||||||||
Only 100 of 264 total aligned reads displayed.
GGCAGCTGAAGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGG > NC_002947/84932‑85230 | gcagCTGAAGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑cgtc < 1:4813673/150‑1 (MQ=255) gcagCTGAAGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑cgtc < 1:1750298/150‑1 (MQ=255) gcagCTGAAGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑cgtc < 1:6939424/150‑1 (MQ=255) agCTGAAGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑cgtcgt < 1:3835379/150‑1 (MQ=255) cTGAAGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCCTTACC‑ACAAACTA‑ACTCGTAc > 1:3071815/1‑150 (MQ=255) gAAGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGc > 2:4688914/1‑150 (MQ=255) aaGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACACAGTA‑CGTCGTACGcc > 1:4457411/1‑150 (MQ=255) gCCTTCTTTATCTGGCGTGGCGTGGGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGa > 2:3417620/1‑150 (MQ=255) gCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGGTCCC‑ACAAAGTA‑CGTCGTACGCCGa > 1:7082948/1‑150 (MQ=255) ccTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGag > 2:7228067/1‑149 (MQ=255) ccTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGAt > 2:6861898/1‑150 (MQ=255) ttcttTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCGAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATcc > 2:5951832/1‑150 (MQ=255) ttcttTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATcc > 2:7982216/1‑150 (MQ=255) ttcttTATCTGGCGTGGCATGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATcc > 2:1796412/1‑150 (MQ=255) tttATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGTGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCctct < 2:4003339/150‑1 (MQ=255) tttATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCctct > 1:6227018/1‑150 (MQ=255) tATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCtgt < 2:4384051/150‑1 (MQ=255) aTCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCtgtg < 1:8027878/150‑1 (MQ=255) aTCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCtgtg < 1:7415935/150‑1 (MQ=255) aTCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGGTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCGTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCtgtg < 2:5784884/150‑1 (MQ=255) tCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTgg > 2:5381346/1‑150 (MQ=255) tggcgtggcgTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGa < 2:4774422/150‑1 (MQ=255) tggcgtggcgTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGa < 1:7041075/150‑1 (MQ=255) tggcgtggcgTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGa < 1:659959/150‑1 (MQ=255) ggcgtggcgtGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACCAAATA‑ACTCGTACGCCGATCCACAGTGGGAg > 1:4979113/1‑150 (MQ=39) ggcgtggcgtGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAg < 2:2789130/150‑1 (MQ=255) gcgtggcgtgAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCGGAGGGAGc > 2:6551268/1‑150 (MQ=255) gtggcgtgAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCgg < 2:6641731/150‑1 (MQ=255) gtggcgtgAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCgg > 1:668737/1‑150 (MQ=255) gtggcgtgAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATACTCTGTGGGAGCgg > 1:5580265/1‑150 (MQ=255) gtggcgtgAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCCGTCCC‑CCAAAGTA‑AGGCGGACGCCGAGCCTCTGTGGGGGCgg > 1:2377830/1‑150 (MQ=255) cgtgAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCtt < 2:142328/150‑1 (MQ=255) cgtgAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCCATCGCGACGCAAGGCCGCTCCC‑ACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCtt < 1:5263897/150‑1 (MQ=21) tgAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGc < 2:653298/150‑1 (MQ=255) tgAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGc < 1:2919430/150‑1 (MQ=255) ggCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCCACGCCGTTCCC‑ACAAAGTA‑CGTCGGACCCCGATCCTCTGTGGGGGCGGCCTGGCggc > 1:4735540/1‑148 (MQ=255) gCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTcg > 2:3248618/1‑150 (MQ=255) gATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGAt < 2:5433144/150‑1 (MQ=255) tACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCACGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATgg < 2:3800295/150‑1 (MQ=255) tACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCGGGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATgg < 1:1306999/150‑1 (MQ=255) ggCGCCGGTGTTGGCTGAACGGCGCCGGCAACTCGCTGGGGGGTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATGGCGACGCTCGGCCTTTCCC‑ACAAAGTA‑CGTGGCACGCCGATCATCTGTGGGAGGGGCATTGCGACGCGATGGGCt < 2:6895213/150‑1 (MQ=255) ggCGCCGGTGTGGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGGTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCACGGCCGTCCCC‑ACAACGCA‑CGTCGTACGCCGAGCCTCTGTGGGAGCGGCCTGGCGCCGCGATGGGCt < 2:3088265/150‑1 (MQ=255) cGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCaaa < 2:7204876/150‑1 (MQ=255) gtgtTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGc > 2:4727246/1‑150 (MQ=255) gtgtTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGc < 1:8357858/150‑1 (MQ=255) gtgtTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CCTCGTAAGCCCATCCGCAGTGGGAGCGGCCATGCGTCGCGATGGGCTGCAAAGc > 1:2661244/1‑150 (MQ=39) tgtTGGCTGAACTGCGCCGGCAACTCGCTGGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAACTTA‑CGTCGTCGGCCGATCCGCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCa < 2:259883/150‑1 (MQ=39) tgtTGGCTGAACGGCGCCGGCAACTCGCTCGGGGCTGCGCTGGCCGGGGCCGCTTGGCGGCCCTAGCGCGACGCAAGGCCGTCCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCa < 2:259996/150‑1 (MQ=255) tGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGAc > 2:8295618/1‑150 (MQ=255) gCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGAccc > 2:679359/1‑150 (MQ=255) gCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCATGCGTCGCGATGGGCTGCAAAGCAGAccc > 1:566706/1‑150 (MQ=255) aaCTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGaa > 1:9091206/1‑150 (MQ=255) aCTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTC‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAAt < 2:90578/150‑1 (MQ=255) cgcCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCa < 2:5249350/150‑1 (MQ=255) gCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGGCGCAAGGCCGGTCCC‑CCAAAGTA‑ACTCGTACGCCGCTCCTCGGTGGGGGCGGCCGTGCGTCGCCATGGGCTGCAAAGCAGACCCACAAaaccaaccgc > 1:6390125/1‑148 (MQ=255) aaCTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCAt > 1:2992586/1‑150 (MQ=255) ctcgctcgGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGAGCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCTACCTCATTc < 1:5237199/150‑1 (MQ=255) tcgctcgGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGGCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCAATcc > 1:7600802/1‑150 (MQ=255) tcgctcgGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGGTACC‑ACAAAGTA‑CGTCGTACGCCCATCCGCGGTGGGAGCGGCCGTGGGGCGCGATGGGGTGCAAAGCAGACCCACAAACCCAACcacaatac > 1:4797985/1‑146 (MQ=37) cgctcgGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCt < 2:8805617/150‑1 (MQ=255) cgctcgGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCt < 2:4200383/150‑1 (MQ=255) gggggCTGTGCTGGCGGGGGCGGCTTGGCGGCCCTATGGCGACGCAAGG‑CGTTCCCAACAAAGTA‑GGTCTTCGGCCGTGCCTGTGGGGGTGCGGCCTGGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCaaa < 1:248448/149‑1 (MQ=255) cTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGa < 2:1349190/150‑1 (MQ=255) cTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCggg < 2:8042658/150‑1 (MQ=255) ggCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGca > 1:5249844/1‑150 (MQ=255) gCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGcac > 2:1136388/1‑150 (MQ=255) ggcggCCGCGTGGCGGCCCTAACGCGCCGCAAGGCCGTTCCC‑CCAACCCC‑CGTCGTACGCCGCTCCTCCGGGGGAGCGGCCTCGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCCAACCGGCTCGGGcacac < 2:8250409/147‑2 (MQ=255) gCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTcc < 2:1637959/150‑1 (MQ=255) gCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTcc < 2:3707598/150‑1 (MQ=255) gCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTAAGCCGATCCTCTGTGGGAGCGGCCGTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCACAATCCTCAAACCGGATAGGGCACAACTcc > 1:5911595/1‑150 (MQ=39) gCCGCTTGGCGGCCCTATCGAGACGCAAGGCCGTTCCC‑ACAAACTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCATGCGTCCCGATGGGCTGCAAAGCCGACCCAGAATCACCACCCCATTCATCAAACACGGTCGGGCCCAACGcc > 2:3333531/1‑150 (MQ=255) gggttGGGGGCCCTTTGGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCTTACGCCGATCCGGTGTGGGAGGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCAc < 1:8689720/147‑1 (MQ=38) cGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCAc > 2:567712/1‑150 (MQ=255) cGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCAc < 2:2161977/150‑1 (MQ=255) cTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACCAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCAccc > 2:7573765/1‑150 (MQ=255) ttGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCGGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCACCCTCATGCCGCAAACCGGAGCGGGCACAACTCCAcccc > 2:5844715/1‑150 (MQ=39) cggcCCTATCGCGACGCAAGGCCGTTCCC‑ACAATGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCAGTCCTCAAACCGGATCGGGCACAACTCCACCCCTTcc < 2:6338012/150‑1 (MQ=255) cggcCCTATCGCGACGAAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTcc < 1:8923919/150‑1 (MQ=255) ggcCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTGTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCa < 1:6033632/150‑1 (MQ=255) cccTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGc < 2:5098685/150‑1 (MQ=255) ccTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCt > 2:5326342/1‑150 (MQ=255) ccgctACGAACGGCCGTCCCC‑AAAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGTGGGGCCTTGCGGCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTg < 1:3895118/149‑1 (MQ=255) gcgACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCa > 2:7466009/1‑150 (MQ=255) gCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAActcc > 2:8628476/1‑150 (MQ=255) aaGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAActcctc < 2:2198448/150‑1 (MQ=255) ggCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGa < 2:8104801/150‑1 (MQ=255) gCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGag > 1:4412029/1‑149 (MQ=255) ccGCTCCC‑ACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATc > 2:6143587/1‑150 (MQ=21) ccGCTCCC‑ACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATc > 1:3611126/1‑150 (MQ=21) ccc‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGAAGACCCATAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTg > 1:5554170/1‑150 (MQ=255) cc‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGc > 2:4523642/1‑150 (MQ=255) c‑acaACGTC‑CGTGGTACGCCGATCCTCGGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCg < 1:1066657/150‑1 (MQ=255) c‑acaAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCg < 1:687992/150‑1 (MQ=255) c‑acaAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCg > 2:3751334/1‑150 (MQ=255) caAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGTGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGc > 1:6980441/1‑150 (MQ=255) aaaGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGcc > 2:3107954/1‑150 (MQ=255) a‑CGTCGTCCGCCTATCCTCTGTGGGTGGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGcc < 1:1841830/150‑1 (MQ=255) gtcgtACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCg < 2:8775611/150‑1 (MQ=255) tcgtACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCgg < 1:4493468/150‑1 (MQ=255) tcgtACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCgg > 1:4657193/1‑150 (MQ=255) | GGCAGCTGAAGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTGGCTGAACTGCGCCGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCC‑ACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGG > NC_002947/84932‑85230 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |