| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 868,054 | G→T | 5.9% | intergenic (+149/+28) | PP_0750 → / ← mqo‑I | hypothetical protein/malate:quinone oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 868,054 | 0 | G | T | 5.9% | 949.1 / 34.3 | 287 | intergenic (+149/+28) | PP_0750/mqo‑I | hypothetical protein/malate:quinone oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base G (170/97); new base T (8/9); total (181/106) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.99e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 | |||||||||||
Only 100 of 287 total aligned reads displayed.
TCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAGGGTCTTCTCGCGAGCCGGGAAG > NC_002947/867906‑868202 | tCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGa < 2:5825478/150‑1 (MQ=255) atGTAGCCAGTGCCGCCATCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAg < 2:7123661/149‑1 (MQ=255) tGTAGCCTGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCGGTGGGAGCGGGCATGCCCGCTAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAgg < 2:3411957/150‑1 (MQ=255) cAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCTCGGGGCG‑tt < 1:6074284/150‑1 (MQ=255) gCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCTCGGGGCG‑tttttt < 2:135181/150‑2 (MQ=255) gCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCTCGGGGCG‑tttttt < 2:4348814/150‑2 (MQ=255) gCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAGGAGCCGCGCCGCACCTGCGGGCATTACCGCCCCGGTGGGAGCGGGCAGGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCTCGGGGCG‑tttttt < 1:2804920/150‑2 (MQ=255) cGGCCTCTTCGCGGGCGCGCCCGCTCCCCCAGGAGGCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCTCGGGGCG‑ttttttgt < 1:2677929/150‑4 (MQ=39) cGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGCGTCGCGCCGCACCTGCGGGCATTACCGACCCGGTGGGAGCGGGCAAGCCCCCGCAGAGGGCCGTACAGGCA‑‑‑GATCAAGCGCCAGGCACAAAAAAAGCCCCGGCGGGCG‑GTTTTGCg > 2:8054468/1‑150 (MQ=255) ggCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGt < 2:6001884/150‑1 (MQ=255) CCTCTTCGCGGGCGCGCCCTCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGAACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGttt > 1:4497530‑M1/1‑150 (MQ=255) TCGGGGGCGCCCCCGCTCCCACCGGAGTCGCGCCGCACGTGGGGGCATTACCTAACCTGTGGGCGCGGCCTTGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCAAAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGAc > 1:1053622‑M1/1‑150 (MQ=255) GGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGc > 1:7612997‑M1/1‑150 (MQ=255) GGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGGGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGACG‑TTTTTGCGTTTCAGACCGGc > 2:3244539‑M1/1‑150 (MQ=255) GCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACCCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCtt < 1:6423317‑M1/150‑1 (MQ=255) catgcCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTa > 2:2505310/4‑150 (MQ=255) gcCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGc > 1:8833552/1‑150 (MQ=255) cccGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCg < 2:335725/150‑1 (MQ=255) ccGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGt > 1:2925134/1‑150 (MQ=255) ccGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGt > 2:3694223/1‑150 (MQ=255) cGCTCCCACCGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTa < 1:2973219/150‑1 (MQ=255) cGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCAGTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTa < 2:4843861/150‑1 (MQ=255) gCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAg > 1:6075555/1‑150 (MQ=255) tcccacaggttcggtaatgcccgcaggtgcggcgcgactcctgtgggagcgggcgcgcccgcgaagaggGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTg > 1:8040886‑M2/70‑150 (MQ=255) tcccacaggttcggtaatgcccgcaggtgcggcgcgactcctgtgggagcgggcgcgcccgcgaagaggCCGGCACTGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTg > 2:7879824‑M2/70‑150 (MQ=255) tcccacaggttcggtaatgcccgcaggtgcggcgcgactcctgtgggagcgggcatgcccgcgaagaggGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTaa > 1:2190864‑M2/70‑142 (MQ=255) tcccacaggttcggtaatgcccgcaggtgcggcgcgactcctgtgggagcgggcatgcccgcgaagaggGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTg > 1:5078477‑M2/70‑150 (MQ=255) tcccacaggttcggtaatgcccgcaggtgcggcgcgactcctgtgggagcgggcatgcccgcgaagaggGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTg > 2:7525017‑M2/70‑150 (MQ=255) ccacaggttcggtaatgcccgcaggtgcggcgcgactcctgtgggagcgggcgcgcccgcgaagaggCCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCt > 1:1378281‑M2/68‑150 (MQ=255) ccACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCt > 1:7430730/1‑150 (MQ=255) ccACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCt > 2:6298791/1‑150 (MQ=255) cacaggttcggtaatgcccgcaggtgcggcgcgactcctgtgggagcgggcgcgcccgcgaagaggCCGGCACTGGCTACAGATC‑AGCCACGGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGc > 1:6953175‑M2/67‑150 (MQ=255) cacaGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCtt > 1:4288403/1‑150 (MQ=255) accggAGTCGCGCCGCACCTGCGGGATTTACCGAACCTGTGGGCGCGGGCATGCCCGCGAAGAGGGCGTTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTg < 1:2628935/147‑1 (MQ=255) acaggttcggtaatgcccgcaggtgcggcgcgactcctgtgggagcgggcgcgcccgcgaagaggCCGGCACTGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTGTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTg > 1:4694628‑M2/66‑150 (MQ=255) acaGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTg < 2:8283271/150‑1 (MQ=255) acaGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTg > 2:3769136/1‑150 (MQ=255) acaGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCC‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTg > 2:1068395/1‑150 (MQ=255) ccggAGGCGCGCCGCACCGGCGGTAATTACCGACCCTGTGGGTGCGGGCATGCCCGCGACGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTgg < 1:2413172/148‑1 (MQ=255) aggttcggtaatgcccgcaggtgcggcgcgactcctgtgggagcgggcgcgcccgcgaagaggGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGgc > 1:9161577‑M2/64‑150 (MQ=255) aGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGgc > 1:811451/1‑150 (MQ=255) gAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGgccg > 2:8817961/1‑150 (MQ=255) gAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGgccg > 2:5751554/1‑150 (MQ=255) gAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGgccg > 2:925112/1‑150 (MQ=255) aggcgcgCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGgccgc < 1:7263164/147‑1 (MQ=255) aGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGgccgc < 1:2051891/150‑1 (MQ=255) tCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGccgccg > 2:5193227/1‑150 (MQ=255) tCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGccgccg > 2:1257329/1‑150 (MQ=255) tCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGccgccg > 2:6887691/1‑150 (MQ=255) gcgcgCCGCCCCGGGGGGCATTCCCGACCCTGGGGGAGCGGGCAGGCCCGCGACGTGGGCGGTACAGGCT‑‑‑TATCAAGCGCCAGGCAAAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGccgccg < 1:5736351/149‑1 (MQ=255) gcgcCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCggg > 1:8301965/1‑150 (MQ=255) cgccgcACCGGCGGGCATTACCGAACCGGGGGGCGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGgc < 1:4741763/150‑1 (MQ=255) gccgcACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGgct > 2:7863301/1‑150 (MQ=255) gccgcACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAAGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGgct > 2:7805471/1‑150 (MQ=255) ccgcACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGgctg > 1:7630819/1‑150 (MQ=255) ccgcaggtgcggcgcgactcctgtgggagcgggcgcgcccgcgaagaggCCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGctct > 1:343060‑M2/50‑150 (MQ=255) aTTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTc > 2:6079485/1‑150 (MQ=255) tACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCa > 2:8921936/1‑150 (MQ=255) ccGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAgg > 2:3114497/1‑150 (MQ=255) tgtgGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGcgt < 2:5627997/150‑1 (MQ=255) tgGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGcgtcg > 1:6584688/1‑150 (MQ=255) tcttcgCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGcgtcg > 1:3204173/6‑150 (MQ=255) tcttcgCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGGGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCgcggcg > 1:5352107/6‑150 (MQ=255) ggAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGtt > 2:1850533/1‑150 (MQ=255) gCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCa > 1:4944727/1‑150 (MQ=255) aTGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACt > 2:4492784/1‑150 (MQ=255) ccgcgaagaggGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATc > 2:2143869‑M2/12‑150 (MQ=255) ccgcgaagaggGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATc > 2:1821896‑M2/12‑150 (MQ=255) cgcgaagaggGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCt < 2:8301965‑M2/140‑1 (MQ=255) gaagaggGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTtgt < 1:4078540‑M2/143‑1 (MQ=255) aagaggGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTtgtg < 2:3461760‑M2/144‑1 (MQ=255) aagaggGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTtgtg < 1:9033108‑M2/144‑1 (MQ=255) aggGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTa > 2:4090683‑M2/4‑150 (MQ=255) gTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAgcgc < 2:8726346/150‑1 (MQ=255) aCAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCgcag > 1:4903628/1‑150 (MQ=255) cAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCgcagc > 2:6474238/1‑150 (MQ=255) aGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCgcagca > 1:1205045/1‑150 (MQ=255) gCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTACGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATc > 2:7180939/1‑150 (MQ=255) gCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATc > 2:8437149/1‑150 (MQ=255) aaGCGCCAGGCACAAACAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGcc < 2:1957424/150‑1 (MQ=255) aaGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGcc > 1:4795562/1‑150 (MQ=255) gcgcCAGGCACAAAAAACGCCCCCAGGGGCG‑TATTTGCGTTTCAGACCGGCTTAAGCGTAGTGCGTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCGTCGGTTGCCAg > 2:3548719/1‑150 (MQ=255) cgcCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAgg < 1:8967160/150‑1 (MQ=255) cgcCAGGCACAAAAAACGCCCCGAGGGGCG‑ATTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAgg < 2:6857170/150‑1 (MQ=255) cAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAGGGtc > 1:5930216/1‑150 (MQ=255) acaAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAGGGTCTtctc > 2:550269/1‑150 (MQ=255) acaAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAGGGTCTtctc < 2:1699649/150‑1 (MQ=255) caAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAGGGTCTTCTcg < 1:7805471/150‑1 (MQ=255) aaaaaaCGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAGGGTCTTCTcgc < 1:4655666/150‑1 (MQ=255) aaaaaCGCCCCTCGGGGCGTTTTTTGTGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAGGGTCTTCTcgc > 1:3667450/1‑150 (MQ=255) aaaaaCGCCCCTCGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAGGGTCTTCTcgcg > 1:5621954/1‑150 (MQ=255) aaaaaCGCCCCTCGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAGGGTCTTCTcgcg > 2:7283307/1‑150 (MQ=255) aaccGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAGGGTCTTCTCGCGAg < 1:8543203/147‑1 (MQ=255) aaCGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAGGGTCTTCTCGCGAGc > 2:7065207/1‑150 (MQ=255) aaCGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAGGGTCTTCTCGCGAGc > 2:2676408/1‑150 (MQ=255) cGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAGGGTCTTCTCGCGAGCCg < 2:898485/150‑1 (MQ=255) cGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAGGGTCTTCTCGCGAGCCg < 1:3699527/150‑1 (MQ=255) cccGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAGGGTCTTCTCGCGAGCCGGGa > 2:2429605/1‑150 (MQ=255) cccGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAGGGTCTTCTCGCGAGCCGGGa < 1:1720450/150‑1 (MQ=255) ccGAGGGGCG‑TTTGTGCGATTCAGCCCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAGGGTCTTCTCGCGAGCCGGGaa < 2:4694628/150‑1 (MQ=255) | TCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCT‑‑‑GATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCG‑TTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCACTGATCTTGTGGTACAGCGCAGCATCGGTTGCCAGGGTCTTCTCGCGAGCCGGGAAG > NC_002947/867906‑868202 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |