| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 883,866 | A→C | 11.6% | intergenic (+101/‑227) | PP_0766 → / → PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 883,866 | 0 | A | C | 11.6% | 306.7 / 12.6 | 124 | intergenic (+101/‑227) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (64/41); new base C (4/13); total (68/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.03e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 128 total aligned reads displayed.
CAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCAT > NC_002947/883717‑884015 | cAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACa < 1:6734250/150‑1 (MQ=255)cAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACa < 2:2991675/150‑1 (MQ=255)cAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACa < 2:4987049/150‑1 (MQ=255) aaGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAg < 2:2730440/150‑1 (MQ=255) gCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGtt < 1:8084570/150‑1 (MQ=255) ttCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCgg < 1:8289029/150‑1 (MQ=255) ccAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTa < 1:6914573/150‑1 (MQ=255) aGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCCCGACGGCAGGTTCCGCgggggg > 2:6967191/1‑146 (MQ=255) gCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGGTTCCGCGGTAGGa < 1:7568828/150‑1 (MQ=255) cctcAGCGCTGCGTCAGTCTGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTATCTATTTCCTGACCCTGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAga < 2:6631285/147‑2 (MQ=255) ccGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGc < 1:5754165/150‑1 (MQ=255) ccGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGc < 2:7228381/150‑1 (MQ=255) ccGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCCCACCGACAGGTTCCGCGGGAGGAGc > 2:1907011/1‑150 (MQ=255) cGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCg < 1:5890734/150‑1 (MQ=255) gCAGCGCTGCGTCAGTCGTGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 2:4015831/150‑1 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 2:604468/150‑1 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 1:1409884/150‑1 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 1:297139/150‑1 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 1:297145/150‑1 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 1:2167899/150‑1 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 1:1755117/150‑1 (MQ=255) cAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGACCGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCggg < 1:6862011/150‑1 (MQ=255) cAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCggg < 2:2110409/150‑1 (MQ=255) cAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCggg < 1:6673876/150‑1 (MQ=255) cAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCggg < 1:6026521/150‑1 (MQ=255) cAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCggg < 1:6026346/150‑1 (MQ=255) gcgcTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGtt < 1:4372594/150‑1 (MQ=255) gcTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCa < 1:4546417/150‑1 (MQ=255) gCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCAccc < 2:6038664/150‑1 (MQ=25) gCGTCAGTCGGGTATTCGCGAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCAccc < 2:6038719/150‑1 (MQ=25) cAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGa < 2:4474552/150‑1 (MQ=255) tCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCGACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAaga < 2:8846372/150‑1 (MQ=255) gcGGGTATTCGCAAAGCTGAAATCACTGACCGCGGTGTGATCCCCACAACGCCCCGGCTCGCGGGGGCTTTTCTATTACCTGCCCCGGCCTCTTCGCGGGTGACCCCGCCCCTACCGGTTCCGCGGTTGGAGCGGGTTCCCCCGCGAaga < 2:3255811/149‑1 (MQ=255) gTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGACCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑cc < 2:6767468/150‑1 (MQ=255) gCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCggg < 1:3425120/126‑1 (MQ=255) gCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCggg > 2:3425120/1‑126 (MQ=255) tAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGGGTAACCCCGCCCACAAGGTGCGCGGGTGGAGCGGGGTGACCCCCCAAGAGG‑gcgcgcgacg > 1:5177296/1‑146 (MQ=255) ccTGAAACCACTCACCGCCGTGTGACCCCCAGACCGCCCCGGCTCGCCGGGGCTTTTCTATGTCCGGACCCGGCCTCTGCGCGGGTGACCCCGCTCCTACCGGTACCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGggcaaggcaa < 2:8607547/149‑1 (MQ=25) aaaTCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCaa < 2:3712423/150‑1 (MQ=255) gtgtGATCCCCTGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCGTGACCCGGCCTCTGCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTTGGTGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACctc < 2:3775411/150‑1 (MQ=39) gtgtGATCCCCCGACCGCCCGGGCTCGCGGGGGCGTTTCTATTTCCTGACCGGGCCTCTTCGGGGGTTAACCCGCTCCTACTGGTTCCGCGGTAGGAGGGGTTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACctc < 2:4605935/150‑1 (MQ=255) gtgtGATCCCCAGCACGCCCCGGCGCGCGGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGGTTCCGCGGTTGTTGGGGGTACACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACctc < 2:4605637/150‑1 (MQ=38) gtgtGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGTACCCGCGCCTACAGGTTCCGCGGGAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCCAGGCAATCAACCTCCTGAATACctc > 2:6730046/1‑150 (MQ=255) aTCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGGTTCCGCGGTAGGAGCgg > 2:5127921/1‑96 (MQ=255) aTCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 1:5127921/96‑1 (MQ=255) cAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGTGCCCGCGACGACACGGTCCCCGGGAGGGGCCGGGTGACCCCCGCACAGG‑CCGGGCCACGCCCTCCACCTCCAGAGAACCACGCCAAAcccc > 2:7918516/1‑150 (MQ=255) cAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGGACCCCCGCCGGCAGGGTGCGCGGGTGGGGCGGGGGCACCCCCGCAGAGG‑CCCGGCAACGCCCACCACCGCCGGCATACCACTCCCCAcccc > 2:7918106/1‑150 (MQ=255) cAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCCCGACGACAGGTTCCGCGGTGGGAGCGGGGTGACCCCCCCCGGGC‑CCGGGCCAGGCCAGCCAACGCCAGAATACCACGCCAAAaccc > 2:4001196/1‑150 (MQ=255) cAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAAACCCCTCCAAAAGGTTGCGCGGTGTGAGCGGGTTCACCCCCGAAGAGG‑CCCGGCAACGCAAACAACCACCAGAAAAACGATCCaaaaacc > 2:7918520/1‑146 (MQ=255) gaccGCCCCGGCTCGCGGGGGGTTTTCTATTTCCTGACCCGGCCTCTTGGGGGTTGAACCCGCTCCTACCGGTTCCGGGGTAGGTGGGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCg < 1:9062308/147‑1 (MQ=255) aaaCGCCCCGGCGAGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGGACCCCCTCCGACAGGGTGCGCGGTGGGGGCGGGGTCACCCGCGAACGGG‑CCCGGCAAGGGCCTCGACCGCCGGAATACCGCGCCAAACCCCCg > 2:4780775/2‑150 (MQ=255) aaCGCCCCGGCTCGCCGGGGCTTTTCTATTTCCTGACCCGGCCTCTTCGCGGTTTAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGc < 2:4634200/150‑1 (MQ=255) aaCGCCCCGGCGAGCCGGGGCGTGTCTATTTCCTGACCCGGCCTCTTCGCGGGGGAACCCGCTCCGCCAGGGGCCGCGGGAGGATCGGGTTCCCCCGCGAAGCGG‑CCGGGCCAGGCAATCACCCTCCTGACTACCTCTCCCAAccccccc > 2:7392186/1‑148 (MQ=255) cGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCCCTCCGAACGGTTGCGCGGGAGGAGCCGGTTGACCCCCGAAGAGGCCCGGGCACGCCAA‑CAACCACCGCTATACCGGACCAAACcccccccc > 2:1773916/1‑150 (MQ=255) cGCCGGGGCTTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTTAACCCGCTCCTACAGTTTCCGCGGTAGGAGCGGTTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGt < 2:7994915/150‑1 (MQ=255) gTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGcc < 2:8871104/150‑1 (MQ=255) ttCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCCCTCCAACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCCCCCCAGCCCCAGTCCAACAGCCaa > 2:8973041/1‑149 (MQ=38) tttCCTGACCCGGCCTCTTCGCCGGTGAACCCCCGCCAAAAGGTTCCGCGGTAGGAGCGGGTTCACCCCCGGATACG‑CCCGGCAAGGCAAACAAACTCCTGAAAAACAAAACAAAACCCCCCCCCACCCCCAGGCCCACAGCCAGGATGc > 2:357281/1‑150 (MQ=255) tccggcccccGCCCCTGCGCGGCTGACCCCGCCCCGACCCGTGCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCtt < 2:8011708/144‑1 (MQ=255) ccGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGCAGAGG‑CCGGGCAAGGCACTCAACCTCCTGAATACCTCTCCAAACCCCCCCCCCAGCCCCGGTCCATCAGCCCTGTTGCTGTTTGtgg > 2:8311235/1‑148 (MQ=38) tctTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAAACAACCTCCTGAATACCTCTCCAAACCCCCCCCCCAGCCCCGGTCCAGCAGCCAAGTTGCGTTTTGTCGCAGTCt > 2:4194367/1‑150 (MQ=38) tctTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGGAGGAGCGGGTTCACCCCCGAAGAGG‑CCGGGCAAGGCAATCAACCGCCGGAATAACTCTCCAAACCCCCCCCCCAGCCCCGGTCCATCAGCCAAGTTGCTTTTTGTAGCAGTcg > 2:4194245/1‑149 (MQ=38) ttCGCGGGTGGACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCCACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCAGTGCCTCAGCCCTGTTGCGTTTTTTGGCAGTCttt > 2:6268444/1‑150 (MQ=38) ttCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCAACCGCGAAGAGG‑CCGGGCCAGGCACACAACCTCCAGAATACCTCTCCAAAACCCCCCCCCAGCCCCGGTCCATCAGCCAAGTTGCTTTTTTTCGCAGTCttt > 2:6267829/1‑150 (MQ=38) gggTGAACCCGCTCCTACCGGTTCCGCGGTAGGCGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCcgc < 2:145244/150‑1 (MQ=255) gggTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCcgc > 1:8435384/1‑150 (MQ=255) ggTGAACCCGCTCCTTCAGGTTCCGCGGTAGGAGCGGGGTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTACTGAATACCTCTCCAAACCCCCGCCCCAGCCACTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCcgcg > 1:5344632/1‑150 (MQ=255) gAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCt > 2:8410510/1‑150 (MQ=255) gAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCt > 2:6031386/1‑150 (MQ=255) cccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTAtt > 1:7246861/1‑150 (MQ=255) cccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTAtt > 1:7600375/1‑150 (MQ=255) ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTg > 1:7508062/1‑150 (MQ=255) ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTg > 1:7508443/1‑150 (MQ=255) ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTg > 1:3545088/1‑150 (MQ=255) ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTg > 1:1609969/1‑150 (MQ=255) ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTg > 2:4843262/1‑150 (MQ=255) ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTg > 2:229389/1‑150 (MQ=255) ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTg > 1:978259/1‑150 (MQ=255) ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTg > 1:8158582/1‑150 (MQ=255) ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTGTTCCGCGCCTATTg > 1:6816247/1‑150 (MQ=255) ccGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCAGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTg > 2:229295/1‑150 (MQ=255) gCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTgcg > 2:6458005/1‑150 (MQ=255) gCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTgcg > 2:843131/1‑150 (MQ=255) tCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGTCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGcc > 1:8206924/1‑150 (MQ=255) cTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCCCTCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTGCCGCGCCGATTGCGcccc > 1:7398243/1‑149 (MQ=255) cTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCca > 2:6283650/1‑150 (MQ=255) tACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCcat > 2:498605/1‑150 (MQ=255) tACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCcat > 1:2933868/1‑150 (MQ=255) tACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCcat > 2:8651263/1‑150 (MQ=255) tACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCcat > 1:8306973/1‑150 (MQ=255) aCAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATAc > 1:4829825/1‑68 (MQ=255) aCAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATAc < 2:4829825/68‑1 (MQ=255) aCAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCcctc > 2:4860992/1‑150 (MQ=255) aCAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCcatc > 1:4416993/1‑150 (MQ=255) aCAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCcatc > 1:1646565/1‑150 (MQ=255) aCAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCcatc > 1:8417104/1‑150 (MQ=255) aCAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCAGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCcatc > 2:7903878/1‑150 (MQ=255) cAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTTCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCcgtca > 2:1748754/1‑150 (MQ=255) cAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCcatca < 2:5413426/150‑1 (MQ=255) aGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCcctcat > 1:407875/1‑150 (MQ=255) | CAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGG‑CCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCCCCTGTCCATCAGCCATGTTGCTTTTTGTCGCAGTCTTTTCCGCGCCTATTGCGCCCATCAT > NC_002947/883717‑884015 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |