| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,311,748 | G→A | 6.3% | intergenic (‑210/+68) | PP_1144 ← / ← rapA | membrane protein/RNA polymerase‑associated protein RapA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,311,748 | 0 | G | A | 6.3% | 518.7 / 16.9 | 182 | intergenic (‑210/+68) | PP_1144/rapA | membrane protein/RNA polymerase‑associated protein RapA |
| Reads supporting (aligned to +/- strand): ref base G (83/83); new base A (3/8); total (91/91) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.75e-01 | |||||||||||
Only 100 of 182 total aligned reads displayed.
GCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGC > NC_002947/1311601‑1311894 | gCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑t < 2:8373352/150‑1 (MQ=255) cAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑Tg < 2:7776109/150‑1 (MQ=255) cAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAG‑CATCCACTG‑CGG‑Tg > 2:7325802/1‑150 (MQ=255) aattataGTAAGTAGTACTTAAGCCTTCCTTAATAATGGCAAAATGATTTCTACGATTTGGTTATAACTCAAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑Tg < 1:6830904/147‑1 (MQ=255) gTATAGTAAGGATTAATTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGTTTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACCG‑CAG‑TGGa < 1:794113/150‑1 (MQ=255) gTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGa < 2:165359/150‑1 (MQ=255) ataGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATg < 1:1057500/150‑1 (MQ=255) taGTAAGGAGTACTTAAGCCTTCCTGAATAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACCG‑CAG‑TGGATGc < 1:1610636/150‑1 (MQ=255) taGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGc < 1:2790566/150‑1 (MQ=255) ggaaggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCa < 2:3672199/150‑1 (MQ=255) ggaaggaGTACTTAAGCCTTCCTCACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATCCCTTCCTGTGTGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCa < 2:1514439/150‑1 (MQ=255) gaaggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CAGCCACTG‑CGG‑TGGATGCCAc > 2:2204768/1‑150 (MQ=255) aaggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CAACCACAG‑CGG‑TGGGTGCCAcc > 2:5474450/1‑150 (MQ=255) ggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTCCGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACCG‑CAG‑TGGATGcttcgcg < 2:665109/150‑7 (MQ=255) ggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAGG‑CATCCACCG‑CAG‑TGGATGcttcgcg < 2:4485271/150‑7 (MQ=255) cTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCCGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGc < 1:2172051/150‑1 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAG‑CATCCACTG‑CGG‑TGGCTGCCACCCGC‑GTTGcc > 2:2604897/1‑150 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGcc < 1:4367990/150‑1 (MQ=255) tAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCg < 1:4559989/150‑1 (MQ=255) tAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCg < 2:394744/150‑1 (MQ=255) aGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAAGCGCCGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGgt < 1:3950438/150‑1 (MQ=255) ttCCTGACTAATGGCACAATGATTTCTCCGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTc < 1:8566164/150‑1 (MQ=255) ccTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCGTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTcgc < 2:6939423/150‑1 (MQ=255) tGACTAATGGCACAATGTTTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGTAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCgg < 1:2461543/150‑1 (MQ=255) tGACTAATGGCACAATGATTTCTACGATTTGTTTATAACTCCAATCGCAGTGAGCAATAAATTTGGGGCCCTAATGCCTTCCTGGGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCgg < 1:4855676/150‑1 (MQ=255) tGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGGAG‑CCAACACAG‑CCG‑GGGGGGCCCCCCGC‑GGTGGCGGGGTTCGCgg > 2:8493653/1‑150 (MQ=255) tGACTAATGGAACAATGATTTCTCCGATTTGGTTATAACTCCAATCGCAGTGAGTAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCgg < 1:7904515/150‑1 (MQ=255) cctggcaatgctggagaaggccgccctgcgcctggaagccattcgcgtgctgggggctggctagcgcaggccccgcgcccctGGTGGGAGCGGGCACGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCgg > 2:4585813‑M1/83‑150 (MQ=255) gACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑AAAGCCGgtgg > 1:315237/1‑142 (MQ=255) gACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAAGGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑AAAGCCGgtgg < 2:314952/143‑2 (MQ=255) aCTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCGAAG‑CAACCAAAG‑CGG‑TTGGTGGCACCCGC‑GTTTCCGGTGGTCGCGGGc > 1:3672271/1‑150 (MQ=255) aCTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCCCGCAG‑CAAACCCCG‑CGGTTGGTGGCCACC‑GC‑GTTGCCGGGGGTAGCgggg > 1:2009678/1‑149 (MQ=255) tGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCCCGAAA‑CAAACACAG‑CCG‑TGGATGCCACCCGC‑GTTTCCCGTGTTGGCCGGccggcc > 1:6697365/1‑145 (MQ=255) cacaATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCCCAA‑CAAACACAT‑CGG‑GGGGTTCCACCCGC‑GGTGGCCGTGGTGGCGGGCGGGGCCGc > 1:3615493/1‑150 (MQ=255) acaATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATTCCACCGGC‑TTTTCCGGTGTTAGCGGGCGTGCCCGCt > 2:6821103/1‑150 (MQ=255) acaATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACCG‑CAG‑TGGATg > 1:7998696/1‑114 (MQ=255) acaATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACCG‑CAG‑TGGATg < 2:7998696/114‑1 (MQ=255) caATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTc < 2:7292883/150‑1 (MQ=255) tactactaTTTGCTAAAAACACAAATCGCATTGAGTAATAAATTTGGGCCCAAAATCCCTTCCTGTGGGAGCGGCCGACCCCGCTAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAg < 1:1138504/148‑1 (MQ=21) tACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATACACAG‑CGG‑TGGATGCCACCGGC‑TTTTCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAgggg > 2:3630554/1‑150 (MQ=255) tACGATTAGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCCAG‑CAACCACAG‑CGG‑TGGATGCCCCCCGC‑GTTGCCGGGGTTCGCGGGCGGGGCCCCTCCCCCCAgggg > 1:5981635/1‑150 (MQ=255) gATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CCTCCCCAG‑CGG‑GGGATGCCACCCGC‑GTTTCCGGTGGTGGCGGGCGGGCCCGCGCCCACAAGGGgcgc > 2:6306992/1‑150 (MQ=255) gATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGgcga > 2:5363346/1‑149 (MQ=255) gATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCCAG‑CAACCCCAGCCGG‑GGGTTGCC‑CCCGC‑GGTTCCGGTGTTCGCGGGCGGGCCCCCACCCCCACCGGgcgc > 2:1793646/1‑150 (MQ=255) tttGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCCAG‑CAACCACCGCCGG‑GGGAGGCCCCCGCC‑TTTCCCGG‑GGTCGCGGGCGGGGCCCCCCCCCCAACGGgcgccg > 2:13181/1‑148 (MQ=255) ttGGTTAACACGCCAATCGCCGTGCGTAATAAATTGGGGGCCCTAAGGCCTTCCGGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCggg < 1:7702595/150‑1 (MQ=25) ggTTATAACCCCAAGCGCAGTGAGGAATAATTTTGGGCCCCTAAGGCCTTCCTGTGGGCGCGGGCGCGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGc < 1:8908542/150‑1 (MQ=37) gTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGGCGCGGAGCCAACCA‑AG‑CGG‑GGGGTGCCCCCCGC‑CTTGGCGGGGGTGGGGGGGGGGGCCGGCCCCCCAAAGGGGGCgggggg > 1:1113105/1‑148 (MQ=255) cgccAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTa < 2:7094067/148‑1 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGGAG‑CAACCACAG‑CGG‑TGGCTTCCACCCGCTTTTGCCGG‑GTTGGCGGGGGTGCCCCCACCCCCAAGGGGGGCGGGGGCGTCGCTag > 2:1590172/1‑150 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCCGC‑GTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTag > 2:7601578/1‑150 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACAG‑CGG‑TGGATGCCACCGGC‑TTTTCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTag > 2:5240523/1‑150 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGCAG‑CCTCCACAG‑CGG‑TGGATGCCCCCCGC‑GTTGCCGGGGGTCGCGGGCGGGCCCGCGCCCACAAGGGGCGCGGGGCCGGCGCGag > 2:6428128/1‑150 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAG‑CATCCACAG‑CGG‑TGGATGCCACCCGC‑GTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTag > 2:3785882/1‑150 (MQ=255) aaTCGCTGTGAGGATTAAATTGGGGGCCCTAATGCCTTCCTGTGGGCGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagcca < 1:3482611/150‑1 (MQ=255) aaTCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagcca < 2:7938153/150‑1 (MQ=255) gAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGc < 2:4909840/84‑1 (MQ=255) aaTAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACAG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCAGCGCTAGCCACCCACCAGCAcgc > 2:8247449/1‑150 (MQ=255) aTTTGGGGCCCTACTGCCTTCCTGTGGGCGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATg < 1:4314855/150‑1 (MQ=255) gggCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTc < 1:7585845/150‑1 (MQ=255) gggCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTc < 2:7730013/150‑1 (MQ=255) gggCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TGTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTc < 2:873670/150‑1 (MQ=255) cccTAATGCCTTCGTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTACGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAg < 1:7059218/150‑1 (MQ=255) ccTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAggg < 2:8444330/150‑1 (MQ=255) gtCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcg < 2:4176407/149‑1 (MQ=255) cgTGTGGGAGGGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcggc > 1:5760416‑M1/3‑150 (MQ=255) ccTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcggc < 1:4827062/150‑1 (MQ=255) TGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTtc > 2:7459205‑M1/1‑150 (MQ=255) TGGGAGCGGGCGAGCCCGCCAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTAGCGGGCGGGCCCGCTCCCACCAGGGGCGCGGGGCCTGCGCTAGCCCGCCACCAGCACCCGAAAGGCGTCCAGGCGCCGGGcggccatc < 2:9040679‑M1/150‑4 (MQ=255) GGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTtctc > 1:6368389‑M1/1‑150 (MQ=255) GGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTtctc > 2:3342647‑M1/1‑150 (MQ=255) GAGCGGGCGCGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTcc > 1:8793705‑M1/1‑150 (MQ=255) AGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCa > 2:8921701‑M1/1‑150 (MQ=255) AGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCa > 1:2604897‑M1/1‑150 (MQ=255) GGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCAt > 2:1046521‑M1/1‑150 (MQ=255) GCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCCCCCGCACGCGCATGGCTTCCAGGCGCCGGGCGGCCTTCTCCAGCAtt < 2:8557302‑M1/150‑1 (MQ=255) GCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCAtt > 2:5512855‑M1/1‑150 (MQ=255) GCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCAtt < 1:6744538‑M1/150‑1 (MQ=255) gAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGc > 1:4169311/1‑150 (MQ=255) gAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGc > 1:6548964/1‑150 (MQ=255) cccGCGCAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAg < 1:5405013/150‑1 (MQ=255) cgcgAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGc > 2:3394886/1‑150 (MQ=255) gcgAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCCCCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGcc > 1:4405445/1‑150 (MQ=255) cgAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCGAGCATTGCCAGGCCa < 1:4919794/150‑1 (MQ=255) cATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTc < 2:1553949/150‑1 (MQ=255) cATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTc < 1:7325802/150‑1 (MQ=255) cATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTc < 2:3615129/150‑1 (MQ=255) aTCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcg > 2:1408073/1‑150 (MQ=255) aTCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcg > 2:6827205/1‑150 (MQ=255) aTCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGATCGCGGGCGTGCCCCCTCCCACAACGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCCAATGGCTTCCAGGCGCAGGGCGCCCTTCTCCAGCCTTGCCAGGCCAACTTcg > 1:5381446/1‑150 (MQ=255) aTCCACCG‑CAG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCAGCTTcg > 2:5018563/1‑150 (MQ=255) tCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgc > 2:784081/1‑150 (MQ=255) tCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgc > 1:4733440/1‑150 (MQ=255) tCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgc > 2:2535436/1‑150 (MQ=255) cACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCgcgc > 1:9046209/1‑150 (MQ=255) cACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCgcgc > 1:9046234/1‑150 (MQ=255) aCTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGcgcc > 2:7230624/1‑150 (MQ=255) cTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGcgccg > 1:2168069/1‑150 (MQ=255) tG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCCGCACGCGACTGGCGTGCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGGCATCTTCGcgccgc > 1:3843601/1‑150 (MQ=38) tG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGcgccgc > 2:464972/1‑150 (MQ=255) | GCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAG‑CATCCACTG‑CGG‑TGGATGCCACCGGC‑TTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGC > NC_002947/1311601‑1311894 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |