| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,392,925 | G→A | 12.8% | intergenic (+89/‑97) | PP_1214 → / → ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,392,925 | 0 | G | A | 12.8% | 508.0 / 50.2 | 200 | intergenic (+89/‑97) | PP_1214/ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC |
| Reads supporting (aligned to +/- strand): ref base G (78/92); new base A (8/16); total (88/112) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-02 | |||||||||||
Only 100 of 207 total aligned reads displayed.
TGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGT > NC_002947/1392778‑1393074 | tGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑Gcc < 1:5449564/150‑1 (MQ=255) gCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑Gcc‑c < 1:8615511/150‑1 (MQ=255) gAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CAtt < 2:4931495/150‑1 (MQ=255) aaCGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CAttt < 2:9050679/150‑1 (MQ=255) aCGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTc < 1:6667090/150‑1 (MQ=255) cGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCa < 1:1377502/150‑1 (MQ=255) cTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAAt < 2:6131025/150‑1 (MQ=255) cTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGATTAC‑GCC‑CAGTTCAAAt > 2:5220338/1‑150 (MQ=255) cTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCCCTCCTACAGGTATTAC‑GCC‑CATATCacag > 2:5878403/1‑147 (MQ=255) cTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCCCTCCAACAGGTATTAA‑GCC‑CCTTTCAAAt > 2:3439545/1‑150 (MQ=255) ttCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAAtgtg < 1:8400516/150‑1 (MQ=255) ttCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAAtgtg < 1:8293440/150‑1 (MQ=255) ttCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAAtgtg < 2:3223484/150‑1 (MQ=255) ttCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGATTAC‑GCC‑CATTTCAAAtgtg > 2:6103797/1‑150 (MQ=255) tCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATgtgg < 2:5242159/150‑1 (MQ=255) tCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATgtgg < 2:7144281/150‑1 (MQ=255) tCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATgtgg < 2:306477/150‑1 (MQ=255) cAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTTAAACCGCGCCGGCAGGGTTTAC‑GCC‑CCTTTCGAATgtggtg > 1:5313559/1‑150 (MQ=255) cAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATgtggtg < 2:5975321/150‑1 (MQ=255) caTGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCATTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGc < 2:8491593/149‑1 (MQ=255) aaTGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGc < 1:8790341/150‑1 (MQ=255) aTGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCa < 2:4485229/150‑1 (MQ=255) aTGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCa < 2:3713488/150‑1 (MQ=255) ccAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTAc < 1:6999786/150‑1 (MQ=255) ccAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCGCCTACAGGTATTAC‑GCC‑CAGTTCAAATGTGGTGCAGTAc > 2:8936044/1‑150 (MQ=255) cAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCATTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTAcc < 2:373847/150‑1 (MQ=255) aTTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGC‑ACCACATTTGAAATG‑GGCGTAATACCTGt < 2:6470448/150‑1 (MQ=21) aTTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGAG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGt < 2:8791150/150‑1 (MQ=255) tttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGC‑ACCACATTTGAAATG‑GGCGTAATACCTGTa < 2:5112705/150‑1 (MQ=21) tttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGC‑ACCACATTTGAAATG‑GGCGTAATACCTGTa < 1:5464451/150‑1 (MQ=21) tttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGC‑ACCACATTTGAAATG‑GGCGTAATACCTGTa < 2:6612832/150‑1 (MQ=21) ttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAg < 1:2615530/150‑1 (MQ=255) ttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAg < 2:6808804/150‑1 (MQ=255) ttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGC‑ACCACATTTGAAATG‑GGCGTAATACCTGTAg < 2:2554448/150‑1 (MQ=18) tCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAgg < 1:6254083/150‑1 (MQ=255) ccGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACCGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGa < 1:4503731/150‑1 (MQ=255) ccGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGC‑ACCACATTTGAAATG‑GGCGTAATACCTGTAGGa < 2:3877237/150‑1 (MQ=18) gacgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGC‑ACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGc < 2:6937427/150‑1 (MQ=18) gacgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGC‑ACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGc < 1:2944429/150‑1 (MQ=18) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCgg < 1:1703740/150‑1 (MQ=255) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCgg < 1:767167/150‑1 (MQ=255) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCgg < 1:767000/150‑1 (MQ=255) gagaTCATGGAAAACCTCGGCTAAGGTGATTTGGCTTTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGC‑ACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCggg < 1:3869268/150‑1 (MQ=18) gagaTCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCggg < 1:272662/150‑1 (MQ=255) gagaTCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCggg < 1:3703052/150‑1 (MQ=255) gaTCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTCTTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCGGTAGGAGCGGGtt > 2:9023981/1‑150 (MQ=255) gaTCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGtt < 1:4035994/150‑1 (MQ=255) cATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑c < 1:7596504/150‑1 (MQ=255) aTGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTTAACCCGCGCCTACCGGTATTAC‑GCC‑CCATTCAAAAGTGGTGGAGGACCAGGAGGAGCGGGGTTT‑cc > 2:211680/1‑150 (MQ=255) aTGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTGAAACCGCTCCTACAGGTATTAC‑GCC‑CAAATGAAATGTTGTGCAGTACCAGTGGGAGCGGGGTTagc > 1:6794463/1‑148 (MQ=38) aTGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCGTTCGCGGGGAAAACCGCGCCAAAAGGTATTAC‑GCC‑CCATTGAAAAGTGGTGCCGTAACGGGTGGGGCGGGGTTagc > 1:6794609/1‑148 (MQ=255) ggAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCcg < 1:2528385/150‑1 (MQ=255) cGGCTATGGTGATTGGGCTTTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCGTGTGCGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGC‑ACCACATTTTAACTG‑GGCTTAATACCTGTAGGCGCGGGTTTA‑CCCGCGAAAGGGc < 2:4759867/150‑1 (MQ=14) gatacggTTATTTGGCTTTTTGTG‑CCAACTCTGAGCTTTTGATCGCGCCTGTGCGGGCCCTTTCGCGGGTAACCCCGCTCCTACAGGTTTTAC‑GCC‑AATTTCAAATGTGGTGAAGTACCTTTAGGAGCGGTTTTA‑CCCGCGAAAGGGCCg < 2:4796485/145‑1 (MQ=25) gCTTAGGTGTTTTGGCTTTTTGTG‑CCAACTCTGAGCGTTTGTTAGCGCCTGTGCCGGCCCTTTCGCGGTTAAACCCGCTCCTACCGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCg < 2:4795251/150‑1 (MQ=37) tAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAAACCGCTCCAACAGGTATTAA‑GCC‑CATTTCAAATGTGGTGCAGTAACTGGAGGATCGGGGTTA‑ACCGCGAAAGGGCCCgc > 2:4484435/1‑150 (MQ=38) aaGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAAGGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGgcg > 2:7602112/1‑150 (MQ=255) gTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCGTTCGCGGGGAAACCCCCGCCGACCCGGATTAC‑GCC‑CAAGTCAAATGGGGTGCCGTACCGGTAGGAGCGGGGTTA‑CCCCCGCCAGGGCCCgccccg > 1:6056075/1‑146 (MQ=255) tttGGGATTTTTTGCCCATCTGTTAGCTTTTGTTCGCGCCTGTCCGGGCCCTTTCGGGTTTAAACCCGATCCAACCGTTATTAC‑GCA‑ATTTTCAAATGGGGTGCTCACCCTTTTGGAGCGGTTTTA‑CCCGCGAAAGGGCCGGCGCAGttt < 2:7867758/150‑1 (MQ=255) tg‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAAACCGCGCCGACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCCGGAGGAGCGGGTTTT‑CCCGCGAAAGGGCCGGCGCCGTTTGTAGAGATGcatc > 2:4400798/1‑150 (MQ=37) cAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTACTACAGGTATTAA‑GCC‑CCATTCAAAAGTGGTGCAGTAACAGTAGGAGCGGGTTTA‑ACCGCGACAGGGCCGGCGCAGTTTGTAGAGATGCAACAtt > 2:8111826/1‑150 (MQ=37) cAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCACCTACAGGTATTAC‑GCC‑CATTTAAAAAGTGGTGCAGTACCAGTAGGAGCCGGTTTA‑CCCCCGGAAGGGCCGGCGCAGGTTGTAGAGATGCATCCtt > 2:3690749/1‑150 (MQ=37) ttttATCGCGCCTGGGCGGGCCCTTTCGCGGTTAAACCCGCCCCTACCGTTATAAC‑GCC‑CATTTCAAATGTGGTGCATTACCTGTTGGCGCGGTTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGc < 2:2887820/150‑1 (MQ=25) tttGATTGCGCGTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGTTATTAC‑GCC‑CATTTAAATTGTGGTGCTTTACCTTTAGGCGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGc < 2:2888211/150‑1 (MQ=37) tttGATAGCGCCTGTGCCGGCCCGTTCGCGGGTAAAACCCCACCAACACGTAATAA‑GCC‑CAATTAAAATGTTGTGCACTACCGGTAGGAGCGGGTTTA‑CCCGCGACAGGGCCCGCGCAGGTTGTAGAGATTGAACAATTTTTCggacggc > 2:514124/1‑144 (MQ=19) aTAGCGCCTGTGCCGGCCCTTTCGCGGGTAAAACCCCACCAAAACGGATTAA‑GCC‑CCAATCAAATTGGGGGCCGTAGCCGTCGGGGCGGGGTTA‑ACCCCCCAAGGGGCCGCGCCGGTTGTATAGATGCCACATTTTTTAGAAGGGCTTTa > 2:4242223/1‑150 (MQ=255) tggcgcGTGTGCGGGCCGTTGCG‑GGGTTAACCCGGCCCCGCCGGTTTTACGGCC‑CTTTTATATTGTGGTGCCTTACGTGTGGGTGGGGTTTTC‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTAt < 2:4167978/148‑1 (MQ=255) cgcCTGTGCCGGCCCTTTCGCGGGTAAAACCCCTCCAACAGGGATTAC‑GCC‑CATTTCAAAAGTGGGGCAGTGCCGGTAGGAGCGGGTTTA‑CCCGCGCAAGGGCCGGCGCCGGTTGTAGAGCTGCATCATTTTTTCGACGGGCTTTAttaa > 2:4515849/1‑147 (MQ=25) ccTGTGCCGGCCCTTTCGCGGGTAAAACCGCACCAACAGGGATTAA‑CCC‑CATTTAAAAAGTGGTGGAGTACCTGTAGGAGCGGGTTTT‑ACCGCCCAAGGGCCGGCGCCGGTTGTAGAGAAGGATCATTTTTTAGACGGGCGTTTTGAcga > 2:8121733/1‑148 (MQ=19) cgcgGTTAACCCCGCTCCTACCGGTATTCC‑GCC‑CATTTCAAAGTGGGTGCAGTACCTGTAGGAGCGGTTTTC‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGa < 2:671623/150‑1 (MQ=255) gcgGGTACCCCCGCTCCCCCCGGTATTCC‑GCC‑CTGTTCAATTGTGGTGCTGTACCTGTTGGCGGGGTTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGAc < 2:7737907/150‑1 (MQ=255) gcgGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGAc > 1:4746087/1‑150 (MQ=255) gcgGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTGTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGAc > 1:1493592/1‑150 (MQ=255) aaaCCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGc > 1:3369113/1‑150 (MQ=255) aCCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCGGGCGCAGTTTGTAGAGATGCATCATTTTTTCGAGGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTc > 2:733015/1‑150 (MQ=255) cccGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcg > 2:6366017/1‑150 (MQ=255) ccGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc > 1:6407426/1‑150 (MQ=255) ccGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc > 1:3020568/1‑150 (MQ=255) ccGCTCCTACAGGTACTGC‑ACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc > 2:3534747/1‑150 (MQ=18) cGCTCCTACAGGTCTTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGACAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgcg > 2:6302244/1‑150 (MQ=255) gCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCgcgc > 1:8871883/1‑150 (MQ=255) tCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCAt > 2:577831/1‑150 (MQ=255) tCCTACAGGTACTGC‑ACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCACAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCAt > 1:6184101/1‑150 (MQ=18) cTACAGGTACTGC‑ACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTAt < 2:1307246/112‑1 (MQ=11) tACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 2:5203473/1‑150 (MQ=255) tACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:4570464/1‑150 (MQ=255) tACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 2:437600/1‑150 (MQ=255) tACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:735331/1‑150 (MQ=255) tACAGGTACTGC‑ACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 2:7232081/1‑150 (MQ=21) tACAGGTACTGC‑ACCACATTTGAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:7886447/1‑150 (MQ=21) aCAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAcc > 1:7359738/1‑150 (MQ=255) aGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCgg > 2:5618964/1‑150 (MQ=255) aGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCgg > 2:1069806/1‑150 (MQ=255) gTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCt > 2:3818224/1‑150 (MQ=255) gTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCt > 1:1105/1‑150 (MQ=255) tATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTa > 2:5613398/1‑75 (MQ=255) tcaC‑GCC‑CTTTACACCTGGGGTGCAGTCCCTGTAGCCG‑GGGTTAACCCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATg < 1:5208359/148‑1 (MQ=255) gCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTa > 2:838696/1‑112 (MQ=255) gCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTa < 1:838696/112‑1 (MQ=255) gCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 1:6900087/1‑150 (MQ=255) | TGCAGAACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTG‑CCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTAC‑GCC‑CATTTCAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGT > NC_002947/1392778‑1393074 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |