Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,742,4450TG42.0% 84.5 / 240.5 189intergenic (+32/+39)hutF/PP_5037formiminoglutamate deiminase/lipocalin family lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (36/73);  new base G (36/43);  total (73/116)
Fisher's exact test for biased strand distribution p-value = 9.52e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.88e-02
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 190 total aligned reads displayed.

TCGCCAGGTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCA  >  NC_002947/5742296‑5742593
                                                                                                                                                       |                                                                                                                                                    
 cGCCAGGTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTg                                                                                                                                                     <  1:6758945/150‑1 (MQ=255)
 cGCCAGGTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGTg                                                                                                                                                     <  1:4050775/150‑1 (MQ=255)
    cAGGTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCaa                                                                                                                                                  <  2:7831364/150‑1 (MQ=255)
         gcgcGATGTGATGGTGACTGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCcg                                                                                                                                             <  2:7110577/150‑1 (MQ=255)
             gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGaa                                                                                                                                         <  1:945706/150‑1 (MQ=255)
             gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGaa                                                                                                                                         >  1:6007817/1‑150 (MQ=255)
             gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGGGCTTGCACGCGaa                                                                                                                                         <  2:8156912/150‑1 (MQ=255)
             gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGaa                                                                                                                                         <  1:3052797/150‑1 (MQ=39)
              aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAg                                                                                                                                        <  1:6741162/150‑1 (MQ=39)
              aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAg                                                                                                                                        <  2:1736211/150‑1 (MQ=39)
              aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAg                                                                                                                                        <  1:7160388/150‑1 (MQ=39)
              aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAg                                                                                                                                        <  1:451319/150‑1 (MQ=39)
              aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAg                                                                                                                                        <  1:1178659/150‑1 (MQ=39)
              aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAg                                                                                                                                        <  1:1337468/150‑1 (MQ=39)
              aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAg                                                                                                                                        <  1:1609113/150‑1 (MQ=39)
                gtgATGGTGACTGGGCACTGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTGTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAggg                                                                                                                                      <  1:5762536/150‑1 (MQ=38)
                gtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAggg                                                                                                                                      <  1:6459580/150‑1 (MQ=255)
                gtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAggg                                                                                                                                      <  1:401089/150‑1 (MQ=255)
                  gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCA‑CGTGCAAGCCCGCGAAGGGtt                                                                                                                                    <  1:5650374/150‑1 (MQ=255)
                  gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAgggct                                                                                                                                    <  1:7801548/150‑3 (MQ=38)
                  gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAgggct                                                                                                                                    <  2:806006/150‑3 (MQ=38)
                   aTGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTg                                                                                                                                   <  2:182974/150‑1 (MQ=255)
                   aTGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTg                                                                                                                                   <  1:7240244/150‑1 (MQ=255)
                   aTGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGGTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTTCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTg                                                                                                                                   <  2:5859691/150‑1 (MQ=255)
                    tGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTgc                                                                                                                                  <  2:6007817/150‑1 (MQ=255)
                    tGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAGGGCTgc                                                                                                                                  <  1:327301/150‑1 (MQ=38)
                     ggTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTCGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGaa                                                                                                                                         >  2:1898793/1‑142 (MQ=255)
                            gggCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGGGCTTGCACGCGAAg                                                                                                                                        <  2:4031615/136‑1 (MQ=255)
                             ggCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGTGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGTGAAGGGtt                                                                                                                                    >  2:4618290/1‑139 (MQ=255)
                             ggCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAGGGCTgc                                                                                                                                  <  2:2402815/141‑1 (MQ=38)
                             ggCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAGGGCTgc                                                                                                                                  >  1:2402815/1‑141 (MQ=38)
                              gCAATGGGTAGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGccc                                                                                                                                              <  2:1363929/128‑1 (MQ=255)
                                aaTGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAgggct                                                                                                                                    <  1:5669052/136‑3 (MQ=38)
                                    ggtggtGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTTGG‑TTTCAGCCCATAG‑CGGGGAAACCCCCGAAGGGTTTGAAAGGAAACCCaaaaa                                                                                                                  >  2:1292241/1‑150 (MQ=255)
                                     gtggtgCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCGTTCG‑CGTGCACGCCCGCGAAGGGTTGCAACGCAACCCCaaaaaa                                                                                                                 <  2:4716611/150‑1 (MQ=255)
                                     gtggtgCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAGGGCTg                                                                                                                                   <  2:719095/132‑1 (MQ=38)
                                     gtggtgCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAGGGCTg                                                                                                                                   >  1:719095/1‑132 (MQ=38)
                                         tgCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCCGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCa                                                                                                             <  2:3355655/150‑1 (MQ=255)
                                          gcgcCTGGGGCGGCAGGCCCTGGACTATGACGGCGGGGGGGGGTTGGCCATGGTTTTGCGCCAGCTTTTGGGCTGTGCGTA‑CGGGGTTGGGTTTGCAGCCCTTGG‑GGTGCTTGCCGGCTATGGGTTGCAACGCAACCCCAAAAAACTCAg                                                                                                            <  2:6302964/150‑1 (MQ=255)
                                             ccAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGGG‑GTGGGGCCCCTCGCCGGGCAGGCCCCGCACGGGTGGCACCCCACCCCCaaaaaaaacaggc                                                                                                          >  2:6510055/1‑143 (MQ=255)
                                                    cggcATGCCCAGGAAGATGAACGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACGGGGGTTGCG‑TTGCAGCCCTTCG‑GGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTa                                                                                                  <  2:7947577/150‑1 (MQ=255)
                                                       cATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGGGCTTGCACGCGAAg                                                                                                                                        >  2:671118/1‑109 (MQ=38)
                                                            ccAGGATGATGAAAGCGGGCGGGCTTTTGCCATGGTGTTGCGCCAGCTTTTGGTCTGAGCGTCCGGGGGTTGGG‑TTGCAGCCCTTCG‑GTTGCAAGCCCGCGAAGGTTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGc                                                                                          <  2:5938397/150‑1 (MQ=255)
                                                              aGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAg                                                                                                                                        <  2:2122562/102‑1 (MQ=255)
                                                                               ggggctTTTGCCATGGTGTTGCGCCAGTTTTGGGGCTGAGCTGCCGGGGGTGGCG‑TTGCCGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGa                                                                       <  2:3550071/149‑1 (MQ=255)
                                                                                  gcgTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATATGCTGATCGGACGCCCGCCAGATCa                                                                    <  2:3994302/150‑1 (MQ=255)
                                                                                   cgTTTGCCACGGTGTTGCGCCTGGTTTTGGGCTGTGCGTCCGGGGGTTGCG‑TTGCAGCCCTTGG‑CGGGCACGCCCGCGATGGGTTGAAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCaa                                                                   <  2:3047945/150‑1 (MQ=255)
                                                                                     tgtcccACGGTGTGGCGCCAGCTTTGGGGAGTCGGTTACGGGGGTGGCG‑TTGCAGCCCGTCG‑CGTGAATCCCCGCGACGGGTGCCACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGc                                                                 <  1:478394/146‑1 (MQ=255)
                                                                                        gCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAg                                                                                                                                        <  2:6594523/76‑1 (MQ=255)
                                                                                             ggTGTTGCGCCCGTTTTGGGGGTGCGGTCAGGGGGTTTGGG‑TTGCCGCCGTGCG‑CGTGCACGCCCGGTATGGTTTGAAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGgtg                                                         <  2:2773461/150‑1 (MQ=255)
                                                                                             ggTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGAAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGgtg                                                         <  2:3187599/150‑1 (MQ=255)
                                                                                                  tGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTgc                                                                                                                                  <  1:8175956/72‑1 (MQ=255)
                                                                                                          ttttgGGGCTGTGCGCCCGGGGGTGGGG‑TTGCCCCCGTTGG‑GGTGAACGCCGGCGTGGGTTTGAACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                            <  1:4893175/149‑1 (MQ=255)
                                                                                                                    gcgCGGACGGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGACGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCt                                  <  2:4372541/148‑1 (MQ=255)
                                                                                                                       cGTACGGGGGTTGCG‑TGGCCGCCCTGCG‑CGTGAAAGCCCGCGATGGGTTGCACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGa                               <  1:2650797/150‑1 (MQ=255)
                                                                                                                        gTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAc                              <  2:4948323/150‑1 (MQ=255)
                                                                                                                          acggggtTTGCT‑TTGCACCCATTCG‑CGTGAAACCCCGCTATGGTTTCAAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcag                            <  1:1987118/147‑1 (MQ=255)
                                                                                                                             ggggTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCTAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagcag                         <  2:7294581/150‑1 (MQ=255)
                                                                                                                             ggggTTGCG‑TTCCCGCCCTTCG‑CGTGAACGCCCGCTATGGGTTGAACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagcag                         <  1:1239818/150‑1 (MQ=255)
                                                                                                                                gttgcg‑ttgcAGCCCTTCG‑CGTGCAAGCCCGCGAAGGCTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTAATTGCTGATAGGACGCCCGCCACATCAAGCGGCTGGTGTAATACCCCTGCTGCCGCGCCCAGGAcagcagaga                      >  2:1479184/1‑147 (MQ=255)
                                                                                                                                   gcg‑ttgcAGCCCTTCG‑CGTGAAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtctc                   <  2:5159334/150‑1 (MQ=255)
                                                                                                                                     g‑ttgcAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagcag                         <  2:4192321/142‑1 (MQ=255)
                                                                                                                                     g‑ttgcAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagcag                         >  1:4192321/1‑142 (MQ=255)
                                                                                                                                     g‑ttgcAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCAc                 >  1:3555192/1‑150 (MQ=255)
                                                                                                                                     cggtgcAGCCCTTCG‑CGTGCACGCCCGCGATGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCa                  <  2:5083188/147‑1 (MQ=255)
                                                                                                                                       ttgcAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCGAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACg                >  1:2948195/1‑150 (MQ=255)
                                                                                                                                       ttgcAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAAATCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACg                >  1:6988036/1‑150 (MQ=255)
                                                                                                                                       ttgcAACCCTTCG‑CGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACg                >  1:6618530/1‑150 (MQ=38)
                                                                                                                                          caacccTTCG‑CGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGgt                                                          >  2:457797/4‑105 (MQ=25)
                                                                                                                                          caacccTTCG‑CGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTc             >  1:6868616/4‑150 (MQ=38)
                                                                                                                                          cAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTg                                 <  1:4703142/130‑1 (MQ=255)
                                                                                                                                           aacccTTCG‑CGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAAGTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGTTCATGCGGGTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCTGGTTCTCACGCTcc            >  2:3694885/3‑150 (MQ=37)
                                                                                                                                           aacccTTCG‑CGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc            >  1:1307748/3‑150 (MQ=38)
                                                                                                                                           aacccTTCG‑CGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc            >  1:7621466/3‑150 (MQ=38)
                                                                                                                                           aGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCCGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc            >  2:1641675/1‑150 (MQ=255)
                                                                                                                                           aGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc            >  2:1205426/1‑150 (MQ=255)
                                                                                                                                           aGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc            >  2:5563271/1‑150 (MQ=255)
                                                                                                                                           aGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATGTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc            >  1:6708075/1‑150 (MQ=255)
                                                                                                                                            gCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTccc           >  2:1749766/1‑150 (MQ=255)
                                                                                                                                            gCCCTGCG‑CGTGAACGCCCGCTATGGGTTCCACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTccc           <  1:4613460/150‑1 (MQ=255)
                                                                                                                                             cccTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCa          >  2:7904416/1‑150 (MQ=255)
                                                                                                                                             cccTTCG‑CGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGc                                                                                          >  2:2700388/1‑70 (MQ=18)
                                                                                                                                              ccTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAg         >  2:6236045/1‑150 (MQ=255)
                                                                                                                                              ccTTCG‑CGTGCAAGCCCGCGAAGGGTAGCAACGCAACCCCAAAAAACTCa                                                                                                             <  2:3853534/50‑1 (MQ=255)
                                                                                                                                              ccTTCG‑CGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAg         >  1:2701284/1‑150 (MQ=255)
                                                                                                                                              ccTTCG‑CGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAg         >  1:1471852/1‑150 (MQ=255)
                                                                                                                                              ccTTCG‑CGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGgt                                                          >  2:612497/1‑101 (MQ=37)
                                                                                                                                              ccTTCG‑CGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGgt                                                          <  1:612497/101‑1 (MQ=37)
                                                                                                                                               cTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg        >  2:2938052/1‑150 (MQ=255)
                                                                                                                                               cTTCG‑CGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGgt                                                          >  2:1025521/1‑100 (MQ=38)
                                                                                                                                               cTTCG‑CGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGgt                                                          <  1:1025521/100‑1 (MQ=38)
                                                                                                                                               cTTCG‑CGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg        >  1:549755/1‑150 (MQ=39)
                                                                                                                                               cTTCG‑CGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg        >  1:1387088/1‑150 (MQ=39)
                                                                                                                                               cTTCG‑CGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg        >  1:2354235/1‑150 (MQ=39)
                                                                                                                                                ttCG‑CGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtc                     >  2:3725401/1‑136 (MQ=255)
                                                                                                                                                ttCG‑CGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtc                     <  1:3725401/136‑1 (MQ=255)
                                                                                                                                                ttCG‑CGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc       >  1:3003169/1‑150 (MQ=255)
                                                                                                                                                ttCG‑CGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc       >  1:1090383/1‑150 (MQ=39)
                                                                                                                                                cttggggTGCAAGCCCGCTATGGGTTGAAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg        <  1:3985927/144‑1 (MQ=255)
                                                                                                                                                      gTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCa  >  2:3006145/1‑150 (MQ=255)
                                                                                                                                                       |                                                                                                                                                    
TCGCCAGGTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCA  >  NC_002947/5742296‑5742593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑