Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,742,4490AT42.3% 66.6 / 218.4 188intergenic (+36/+35)hutF/PP_5037formiminoglutamate deiminase/lipocalin family lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (44/57);  new base T (31/43);  total (76/112)
Fisher's exact test for biased strand distribution p-value = 8.78e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.99e-04
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 199 total aligned reads displayed.

CAGGTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAGTGTC  >  NC_002947/5742300‑5742598
                                                                                                                                                       |                                                                                                                                                     
cAGGTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCaa                                                                                                                                                       <  2:7831364/150‑1 (MQ=255)
    tGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGccc                                                                                                                                                   <  2:1745029/150‑1 (MQ=255)
     gcgcGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCcg                                                                                                                                                  <  1:6654098/150‑1 (MQ=255)
      cgcgATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGCTGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCcgc                                                                                                                                                 <  2:4754092/150‑1 (MQ=255)
       gcgATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCAcgcg                                                                                                                                                >  2:3052797/1‑150 (MQ=39)
         gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGaa                                                                                                                                              <  1:945706/150‑1 (MQ=255)
         gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGaa                                                                                                                                              <  1:3038313/150‑1 (MQ=255)
         gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGGGCTTGCACGCGaa                                                                                                                                              <  2:8156912/150‑1 (MQ=255)
          aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAg                                                                                                                                             <  1:7185480/150‑1 (MQ=255)
          aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAg                                                                                                                                             <  1:473259/150‑1 (MQ=255)
          aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGGGCTTGCACGCGAAg                                                                                                                                             <  2:2752916/150‑1 (MQ=255)
          aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAg                                                                                                                                             <  1:1178659/150‑1 (MQ=39)
          aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAg                                                                                                                                             <  1:1337468/150‑1 (MQ=39)
          aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAg                                                                                                                                             <  1:1609113/150‑1 (MQ=39)
          aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAg                                                                                                                                             <  1:451319/150‑1 (MQ=39)
           tgtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAgg                                                                                                                                            <  2:1142934/150‑1 (MQ=255)
            gtgATGGTGACTGGGCACTGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTGTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAggg                                                                                                                                           <  1:5762536/150‑1 (MQ=38)
            gtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGGGCTTGCACGCGAAggg                                                                                                                                           <  2:2093791/150‑1 (MQ=255)
            gtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAggg                                                                                                                                           <  2:4016611/150‑1 (MQ=39)
            gtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAggg                                                                                                                                           <  2:1627323/150‑1 (MQ=39)
              gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGtt                                                                                                                                         <  2:4425968/150‑1 (MQ=255)
              gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAgggct                                                                                                                                         <  2:806006/150‑3 (MQ=38)
              gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAgggct                                                                                                                                         <  1:7801548/150‑3 (MQ=38)
              gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAgggct                                                                                                                                         <  1:5560590/150‑3 (MQ=38)
               aTGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAGGGCTg                                                                                                                                        <  1:3148477/150‑1 (MQ=38)
               aTGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGGTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTTCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTg                                                                                                                                        <  2:5859691/150‑1 (MQ=255)
                tGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTgc                                                                                                                                       <  2:6007817/150‑1 (MQ=255)
                  gTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTgcaa                                                                                                                                     <  2:507281/150‑1 (MQ=255)
                   tGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACTGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAGGGCTgcaac                                                                                                                                    <  1:7082130/150‑1 (MQ=38)
                        gggCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGGGCTTGCACGCGAAg                                                                                                                                             >  1:4031615/1‑136 (MQ=255)
                         ggCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGTGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGTGAAGGGtt                                                                                                                                         <  1:4618290/139‑1 (MQ=255)
                         ggCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAGGGCTgc                                                                                                                                       <  2:2402815/141‑1 (MQ=38)
                         ggCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAGGGCTgc                                                                                                                                       >  1:2402815/1‑141 (MQ=38)
                          gCAATGGGTAGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGccc                                                                                                                                                   <  2:1363929/128‑1 (MQ=255)
                            aaTGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAgggct                                                                                                                                         <  1:5669052/136‑3 (MQ=38)
                                ggtggtGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTTGG‑TTTCAGCCCATAG‑CGGGGAAACCCCCGAAGGGTTTGAAAGGAAACCCaaaaa                                                                                                                       >  2:1292241/1‑150 (MQ=255)
                                 gtggtgCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAGGGCTg                                                                                                                                        <  2:719111/132‑1 (MQ=38)
                                 gtggtgCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAACCCTTCG‑CGGGCTTGCACGCGAAGGGCTg                                                                                                                                        >  1:719111/1‑132 (MQ=38)
                                      gcgcCTGGGGCGGCAGGCCCTGGACTATGACGGCGGGGGGGGGTTGGCCATGGTTTTGCGCCAGCTTTTGGGCTGTGCGTA‑CGGGGTTGGGTTTGCAGCCCTTGG‑GGTGCTTGCCGGCTATGGGTTGCAACGCAACCCCAAAAAACTCAg                                                                                                                 <  2:6302964/150‑1 (MQ=255)
                                         ccAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGGG‑GTGGGGCCCCTCGCCGGGCAGGCCCCGCACGGGTGGCACCCCACCCCCaaaaaaaacaggc                                                                                                               >  2:6510055/1‑143 (MQ=255)
                                                cggcATGCCCAGGAAGATGAACGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACGGGGGTTGCG‑TTGCAGCCCTTCG‑GGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTa                                                                                                       <  2:7947577/150‑1 (MQ=255)
                                                cggcAGGCCCCGCATGATCAACGCGGGGGGGCGTTCGCCACGGTGTTGCGCCAGCTTTTGGGCTGCGCGCCCGGGGGTTGCG‑TTGCAGCCCTCCG‑CGTGAAAGCCCGCGACGGGTTGAAACGCAACCCCAAAAAACTCAGTGCATTTTTa                                                                                                       <  2:3485055/150‑1 (MQ=255)
                                                 ggaaTGACCAGTAAGTTGAACGCGGGCGGGGTTTTGCAATGGTGGTGCGCCTGCTTTGGGGCTGAGGGTCCCGGGGTTGCG‑TGGCAGCCCTTGT‑GTTGATTGCCCGCTACGGTTTGCAACGCAACCACAAAAAACTCAGTGCATTTTTAc                                                                                                      <  2:7183543/147‑1 (MQ=255)
                                                   cATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGGGCTTGCACGCGAAg                                                                                                                                             <  1:671118/109‑1 (MQ=38)
                                                        cctgtaaGATGAACGGGGGGGGGCGTTTGCCATGGTGTTGCGCCAGTTTTTGGGCTGAGCGTACCGGGTTTGCT‑TTCCAGCCCTTCG‑CGTCCAACCCCGCGAAGGTTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGc                                                                                               <  2:1781018/145‑1 (MQ=255)
                                                        ccAGGATGATGAAAGCGGGCGGGCTTTTGCCATGGTGTTGCGCCAGCTTTTGGTCTGAGCGTCCGGGGGTTGGG‑TTGCAGCCCTTCG‑GTTGCAAGCCCGCGAAGGTTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGc                                                                                               <  2:5938397/150‑1 (MQ=255)
                                                        ccAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGGG‑GTGCAGCCCCTAG‑CGGGCCACCCCCCCCAGGGGTTCGACCCCACCCCCAAAAACACAGGGCCGTTTTAATAatttg                                                                                               >  2:4613460/1‑148 (MQ=255)
                                                        ccAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGt                                                                                                                                          >  2:6840291/1‑107 (MQ=255)
                                                               gATGAACGGGGGGGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGACGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCgg                                                                                        <  2:143455/150‑1 (MQ=255)
                                                                  caacgcggccggGCTTTCGCCAAGGTTTTGCGCCACCTTTTGGCCTCAGCGTACCGGGGTTGCT‑TTGCACCCCTTCG‑CGTGCAACCCCCCTAAGGCTTCCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGAcg                                                                                     <  2:4323099/146‑1 (MQ=255)
                                                                           ggggctTTTGCCATGGTGTTGCGCCAGTTTTGGGGCTGAGCTGCCGGGGGTGGCG‑TTGCCGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGa                                                                            <  2:3550071/149‑1 (MQ=255)
                                                                                    gCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAg                                                                                                                                             <  2:6594523/76‑1 (MQ=255)
                                                                                    gCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAg                                                                                                                                             >  1:6594523/1‑76 (MQ=255)
                                                                                              tGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTgc                                                                                                                                       <  1:8175956/72‑1 (MQ=255)
                                                                                                                   cGTACGGGGGTTGCG‑TGGCCGCCCTGCG‑CGTGAAAGCCCGCGATGGGTTGCACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGa                                    <  1:2650797/150‑1 (MQ=255)
                                                                                                                      acggggtTTGCT‑TTGCACCCATTCG‑CGTGAAACCCCGCTATGGTTTCAAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcag                                 <  1:1987118/147‑1 (MQ=255)
                                                                                                                         gggtTTGCG‑TTCCCGCCCTGCG‑GTTGAACGCCCGCTAGGGTTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagcag                              <  2:1854766/150‑1 (MQ=255)
                                                                                                                         ggggTTGCG‑TTGCAGCCGTTCG‑CGTGCACGCCCGCTATGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagcag                              <  2:3040255/150‑1 (MQ=255)
                                                                                                                         ggggTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCTAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagcag                              <  2:7294581/150‑1 (MQ=255)
                                                                                                                         ggggTTGCG‑TTCCCGCCCTTCG‑CGTGAACGCCCGCTATGGGTTGAACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagcag                              <  1:1239818/150‑1 (MQ=255)
                                                                                                                              tgcg‑ttgcAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtct                         >  2:4091550/1‑150 (MQ=255)
                                                                                                                               gcg‑ttgcAGCCCTTCG‑CGTGAAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtctc                        <  2:5159334/150‑1 (MQ=255)
                                                                                                                                cg‑tggcCGCCCGGCG‑GGTGCACGCCCGCGCTGGGTTGCACCGCAACCCCAAAAAACTCCGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCa                       <  2:1663875/150‑1 (MQ=255)
                                                                                                                                 g‑ttgcAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagcag                              >  1:4192321/1‑142 (MQ=255)
                                                                                                                                 g‑ttgcAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCAc                      >  1:3555192/1‑150 (MQ=255)
                                                                                                                                  ggtgcAGCCCGGCG‑CGTGCAAGCCCGCGAAGGGTTGCACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCAc                      <  2:2888957/148‑1 (MQ=255)
                                                                                                                                   ttgcAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCGAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACg                     >  1:2948195/1‑150 (MQ=255)
                                                                                                                                      caacccTTCG‑CGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTc                  >  1:6868616/4‑150 (MQ=38)
                                                                                                                                      cAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTg                                      >  2:4703142/1‑130 (MQ=255)
                                                                                                                                       aacccTTCG‑CGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAAGTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGTTCATGCGGGTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCTGGTTCTCACGCTcc                 >  2:3694885/3‑150 (MQ=37)
                                                                                                                                       aacccTTCG‑CGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc                 >  1:1307748/3‑150 (MQ=38)
                                                                                                                                       aacccTTCG‑CGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc                 >  1:7621466/3‑150 (MQ=38)
                                                                                                                                       aGCCCTTCG‑CGTGCAAGCCCGCGATGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc                 <  2:3879971/150‑1 (MQ=255)
                                                                                                                                       aGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc                 >  2:5563271/1‑150 (MQ=255)
                                                                                                                                         cccTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCa               >  2:7904416/1‑150 (MQ=255)
                                                                                                                                          ccTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAg              >  2:6236045/1‑150 (MQ=255)
                                                                                                                                          ccTTCG‑CGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAg              >  1:2701284/1‑150 (MQ=255)
                                                                                                                                          ccTTCG‑CGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAg              >  1:1471852/1‑150 (MQ=255)
                                                                                                                                          ccTTCG‑CGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGgt                                                               >  2:612497/1‑101 (MQ=37)
                                                                                                                                           cTTCG‑CGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGgt                                                               >  2:1025521/1‑100 (MQ=38)
                                                                                                                                           cTTCG‑CGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGgt                                                               <  1:1025521/100‑1 (MQ=38)
                                                                                                                                           cTTCG‑CGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCGAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg             >  1:4865328/1‑150 (MQ=39)
                                                                                                                                           cTTCG‑CGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg             >  1:1387088/1‑150 (MQ=39)
                                                                                                                                           cTTCG‑CGGGCTTGCACGCGAAGGGCTGCAACACAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAgg                             >  1:3336751/1‑134 (MQ=38)
                                                                                                                                           cTTCG‑CGGGCTTGCACGCGAAGGGCTGCAACACAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAgg                             <  2:3336751/134‑1 (MQ=38)
                                                                                                                                            ttCG‑CGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtc                          >  2:3725401/1‑136 (MQ=255)
                                                                                                                                            ttCG‑CGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtc                          <  1:3725401/136‑1 (MQ=255)
                                                                                                                                            ttCG‑CGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc            >  1:6144757/1‑150 (MQ=255)
                                                                                                                                            cttggggTGCAAGCCCGCTATGGGTTGAAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg             <  1:3985927/144‑1 (MQ=255)
                                                                                                                                             tCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGcc           >  1:5116883/1‑150 (MQ=255)
                                                                                                                                                 cgTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagca                               <  1:6107464/127‑1 (MQ=255)
                                                                                                                                                  gTGCAAGCCCGCGATGGTTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCa       <  2:2989530/150‑1 (MQ=255)
                                                                                                                                                     cAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGAcgccc                                                                                  >  1:1069125/1‑72 (MQ=255)
                                                                                                                                                     cAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAgtg    >  1:8028221/1‑150 (MQ=255)
                                                                                                                                                     cAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAgtg    >  1:6779705/1‑150 (MQ=255)
                                                                                                                                                      aaGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGAt                                                                           <  2:2257411/78‑1 (MQ=255)
                                                                                                                                                      aaGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGAt                                                                           >  1:2257411/1‑78 (MQ=255)
                                                                                                                                                      aaGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGAt                                                                           >  1:72884/1‑78 (MQ=255)
                                                                                                                                                      aaGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAgtgt   >  1:5977735/1‑150 (MQ=255)
                                                                                                                                                      aaGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAgtgt   >  1:4583723/1‑150 (MQ=255)
                                                                                                                                                       |                                                                                                                                                     
CAGGTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCG‑TTGCAGCCCTTCG‑CGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAGTGTC  >  NC_002947/5742300‑5742598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑