Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
JC | NC_002947 | 1,843,229 | (GCGCCAGTTCGTGGC)1→2 | coding (1607/2754 nt) | gacS ← | sensor protein GacS |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1843211 = | 4 (0.100) | 25 (0.660) | 16/256 | 0.6 | 80.8% | coding (1625/2754 nt) | gacS | sensor protein GacS |
? | NC_002947 | = 1843225 | 8 (0.210) | coding (1611/2754 nt) | gacS | sensor protein GacS |
CCCGGGCGAAGGTTCGCAGTTCTGGATCAGCCTCAACCTGCCCAAGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1843342‑1843211 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaCGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCAGTTGCTGCAGGGGGTGCAGGCCGCCAGCCAGGCCGGCCTGCCCTTCGAGTTC < NC_002947/1843225‑1843096 CCCGGGCGAAGGTTCGCAGTTCTGGATCAGCCTCAACCTGCCCAAGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCACGca > 2:525782/1‑134 GGGCGAAGGTTCGCAGTTCTGGATCAGCCTCAACCTGCCCAAGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCACGAACTG > 1:229536/1‑136 GCGAAGGTTCGCAGTTCTGGATCAGCCTCAACCTGCCCAAGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCACGCACAGGC > 2:603304/1‑136 GCGAAGGTTCGCAGTTCTGGATCAGCCTCAACCTGCCCAAGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCACGAACTGGC > 1:572673/1‑136 GAAGGTTCGCAGTTCTGGATCAGCCTCAACCTGCCCAAGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCAGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCCCGCACTGGCGC > 1:684961/1‑136 GGTTCGCAGTTCTGGATCAGCCTCAACCTGCCCAAGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCCCGAACTGGCGCGCC > 2:868173/1‑136 GTTCGCAGTTCTGGATCAGCCTCAACCTGCCCAAGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCCCCACCAACTGGCGCGCCc > 1:337559/1‑135 TCAACCTGCCCAAGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGA > 1:654416/1‑136 TCAACCTGCCCAAGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCCCGCCACGAACTGGCGCGCCAGGCCCAGGAGCACCAccgggg > 1:209069/1‑130 TCAACCTGCCCAAGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCCCGCCACCAACATGCCCGCCACGCACTGGAGCACCACCAGGA > 1:702420/1‑136 AAGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCC > 2:494834/1‑136 AAGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCACGAACAGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCC > 1:547787/1‑136 AAGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCACCCACAGGCGCGCCAGGCACAGGAGCACCACCTTGAACACAGCGGCC > 2:815709/1‑136 AAGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCCCCACGAACTGGCGCGCCAGGCACAGGAGCACCAGCAGGAAGACTGCCGCC > 2:171516/1‑136 AAGGCACATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCACGAACTTGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACAGCGGCC > 1:669377/1‑136 ACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCCCGAACAGGCGCGCCCGGCCCAGGAGCCCCCGCAGGAAGACTGCGGCCGCCGCGTGAG > 1:401072/1‑136 ACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCACGAACTTGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCACAGCGTGAG > 1:948961/1‑136 gcctatGCGCTGCCACCGCAGCCTTTGCTGGGCCGCCGTGCCGCCTTTGTCGATGGCCACTAACGGGCGCGCCACTAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGT < 2:229536/130‑1 CGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTg > 1:575440/1‑135 CGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTAGCCTC > 2:561010/1‑136 atcggCGATGCCCACGAAGGGGCCCGCCCCGATCTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCAGTTGCTGCAGGGGGTGCAGGCCGCCAGCC < 2:822216/131‑1 TCGATGGCCACGAACTGGCGCGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCAGTTGCTGCAGGGGGTGCCGGCCGCCCGCCCGGC > 2:361310/1‑136 cCGCCCCACCACCGGGCGCCCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCAGTTGCTGCAGGGGGTGCAGGCCGCCAGCCAGGCCGGCCTGCCCTTCGAGT < 2:572673/135‑1 GCGCCACTACCTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCAGTTGCTGCAGGGGGTGCAGGCCGCCAGCCAGGCCGGCCGGCCCTTCGAGTTC < 2:951022/136‑1 GCGCCACGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCAGTTGCTGCAGGGGGTGCAGGCCGCCAGCCAGGCCGGCCTGCCCTTCGAGTTC > 1:940305/1‑136 CCCGGGCGAAGGTTCGCAGTTCTGGATCAGCCTCAACCTGCCCAAGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1843342‑1843211 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaCGAACTGGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCAGTTGCTGCAGGGGGTGCAGGCCGCCAGCCAGGCCGGCCTGCCCTTCGAGTTC < NC_002947/1843225‑1843096 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |