Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_002947 | 3,827,335 | Δ51 bp | coding (626‑676/1020 nt) | ptxS ← | 2‑ketogluconate utilization repressor |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_002947 | 3827335 | 3827385 | 51 | 33 [0] | [0] 33 | ptxS | 2‑ketogluconate utilization repressor |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3827334 | 0 (0.000) | 31 (0.840) | 25/250 | 0.2 | 100% | coding (677/1020 nt) | ptxS | 2‑ketogluconate utilization repressor |
? | NC_002947 | 3827386 = | 0 (0.000) | coding (625/1020 nt) | ptxS | 2‑ketogluconate utilization repressor |
CCGGCCTCGAGCAGCGCCCGGGTGACCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGATTTCCAGTACCTGCTGACGCATGCCTGGCCGTCGGCTGATCGACGCGCCGAATGCCTGCACCCGCTCCAGGCGTGAACTGGTGCCATCGAGGGGTTCGCTGACCGCCAGGATGTCGCGGTAGCCCTGGGCTTG > NC_002947/3827211‑3827467 | ccGGCCTCGAGCAGCGCCCGGGTGACCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcaccc > 1:556565‑M1/1‑124 (MQ=255) cGGCCTCGAGCAGCGCCCGGGTGACCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccg < 2:577576‑M1/136‑14 (MQ=255) ccGGGTGACCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactg > 2:561442‑M1/1‑107 (MQ=255) ccGGGTGACCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactg > 2:329523‑M1/1‑107 (MQ=255) ccGGGTGACCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactg > 2:653641‑M1/1‑107 (MQ=255) tGACCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgcc > 2:573712‑M1/1‑102 (MQ=255) aCCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccat < 2:43307‑M1/136‑37 (MQ=255) gCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcga > 1:659854‑M1/1‑97 (MQ=255) gCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgc < 2:973768‑M1/136‑49 (MQ=255) gCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgc < 2:808851‑M1/136‑49 (MQ=255) aaCGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctg > 2:225660‑M1/1‑86 (MQ=255) aCGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctga > 2:667036‑M1/1‑85 (MQ=255) tGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccag > 1:272462‑M1/1‑78 (MQ=255) gAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcg < 1:989842‑M1/136‑66 (MQ=255) ggCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtag < 1:361881‑M1/136‑72 (MQ=255) ggCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtag < 1:329523‑M1/136‑72 (MQ=255) gCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagccctg > 1:468966‑M1/1‑60 (MQ=255) gCGGACCATGACCACTGTGGGCAAGAAACGAAGACAGTTGGCCCTGCAGCCCGGCGCCGCatgcctgaacccgctccaggcgtgaactggtgccatagaggggttcgcttaccgccaggatgtcgcggtagcactg > 2:907511‑M1/1‑60 (MQ=255) ggACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagccctggg < 2:999862‑M1/136‑79 (MQ=255) cATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagccctgggcttg < 2:556565‑M1/136‑83 (MQ=255) aTGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagccctgggcttgc < 1:436672‑M1/136‑84 (MQ=255) tGACCACTGTGGGCAAGAAACGAAGCGAGGTGGCCCTGCAGCCCGGCTCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagccctgggcttgca < 2:484173‑M1/136‑85 (MQ=255) gACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagc < 1:975026‑M1/123‑73 (MQ=255) gACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagc > 2:975026‑M1/1‑51 (MQ=255) aaaCGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagccctgggcttgcaggtggtccagggcctgc > 1:243503‑M1/1‑35 (MQ=255) aCGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagccctgggcttgcaggtggtccagggcctgctc < 1:568432‑M1/136‑104 (MQ=255) cGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagccctgggcttgcaggtggtccagggcctgctcg > 2:981761‑M1/1‑32 (MQ=255) aGCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagccctgggcttgcaggtggtccagggcctgctcgact < 1:364045‑M1/136‑108 (MQ=255) ggcagTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagccctgggcttgcaggtggtccagggcctgctcgactg < 1:863443‑M1/134‑109 (MQ=255) gCCAGTTGGCCCTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagccctgggcttgcaggtggtccagggcctgctcgactg < 1:152964‑M1/136‑109 (MQ=255) cccTGCAGCCCGGCGCCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagccctgggcttgcaggtggtccagggcctgctcgactgcgtcagcat < 2:879670‑M1/136‑118 (MQ=255) cgcCGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagccctgggcttgcaggtggtccagggcctgctcgactgcgtcagcattgtccaggccgac > 2:954111‑M1/1‑6 (MQ=255) cGAatgcctgcacccgctccaggcgtgaactggtgccatcgaggggttcgctgaccgccaggatgtcgcggtagccctgggcttgcaggtggtccagggcctgctcgactgcgtcagcattgtccaggccgacaag < 1:667036‑M1/136‑134 (MQ=255) | CCGGCCTCGAGCAGCGCCCGGGTGACCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGATTTCCAGTACCTGCTGACGCATGCCTGGCCGTCGGCTGATCGACGCGCCGAATGCCTGCACCCGCTCCAGGCGTGAACTGGTGCCATCGAGGGGTTCGCTGACCGCCAGGATGTCGCGGTAGCCCTGGGCTTG > NC_002947/3827211‑3827467 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |