New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4810146	0 (0.000)	28 (0.850)	7/224	1.3	59.0%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5990927	39 (1.190)					intergenic (+243/‑303)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

TTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAA  >  NC_002947/4810023‑4810278                                                                                                                            |                                                                                                                                     ttGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcg                                                                                                                          <  1:880349‑M1/136‑13 (MQ=255)    gCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGcggcgcttcccgggt                                                                                                                       >  1:623797‑M1/1‑121 (MQ=255)    gCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggt                                                                                                                       >  1:112026‑M1/1‑121 (MQ=255)      gggTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaa                                                                                                                     <  2:841723‑M1/136‑18 (MQ=255)                         ggTGTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCTGCGCCTGGTAGTTGTTCGCGGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtt                                                                                                  <  1:359025‑M1/136‑37 (MQ=255)                          ggtttccGCGCGTGGGTGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCGGGGAGTGTTTCAGGGCCTGGGATTTCGAGCGCCGCCCGCGgggcgcttcgcgggtaaacccgctcctacgtttgttt                                                                                                 <  2:597370‑M1/134‑38 (MQ=255)                          gTTTTCTGGGCGTGGGAGGTGTTCGGCGGGGGTTTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgttagttt                                                                                                 <  2:588309‑M1/136‑38 (MQ=255)                                     gtggttggtgttcgGCGGGGTATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCGTGTGAGATCTAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcggccagtccc                                                                                      <  2:623797‑M1/130‑49 (MQ=255)                                     gtgGTAGGTGTTCGCCGGGGTATTTTCAGCGCCTGGTAGGTGTTGGCCGGTAGTGTTTCAGCGCCTGGTAGAGCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcggccagtccc                                                                                      <  2:47190‑M1/135‑49 (MQ=255)                                     gtgGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGGGCCTGGGAGATCGAGCGCCGCGCGGGcggcgcttcgcgggtaaacccgctcctacgtttgtttcggccagtccc                                                                                      <  2:195944‑M1/135‑49 (MQ=255)                                     gggggagGTGTTGGCCGGGGGATTTTCCGCGCCTGGGAGGTGTTCGCCGGGTGAGTTTCAGCGCCTGTGTGATCGAGCGCCGCCCGGGcggcgcttcgcgggtaaacccgctcctacgtttgtttcggccagtccc                                                                                      <  1:376659‑M1/134‑49 (MQ=255)                                     cggggagGTGTTCGCCGGGGGATTTTCTGCGCCGGGGAGGTGTTCGCCGGGAGTGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcggccagtccc                                                                                      <  2:203160‑M1/134‑49 (MQ=255)                                     cTGGGTGGTGTTCGGCGGGTGATTTTCATCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcggccagtccc                                                                                      <  1:504925‑M1/136‑49 (MQ=255)                                     cTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcggccagtccc                                                                                      <  1:200765‑M1/136‑49 (MQ=255)                                                                aGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgcc                                                           >  1:88072‑M1/1‑61 (MQ=255)                                                                     cTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggg                                                      <  2:112026‑M1/136‑81 (MQ=255)                                                                     cTGGGAGGTGTTCGCCGGAAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggg                                                      <  1:309701‑M1/136‑81 (MQ=255)                                                                               ttCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgttt                                                                                                 <  2:560479‑M1/83‑38 (MQ=255)                                                                               ttCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgttt                                                                                                 >  1:560479‑M1/1‑46 (MQ=255)                                                                                  gCCGGGAGAGTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgttt                                                                                                 >  2:497943‑M1/1‑43 (MQ=255)                                                                                  gCCGGGAGAGTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgttt                                                                                                 <  1:497943‑M1/80‑38 (MQ=255)                                                                                    cGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggg                                                      <  2:773694‑M1/121‑81 (MQ=255)                                                                                      gaggattttcagcgcCTGTGAGATCGCGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcggccagtccctcctgcaccagtcgcgcgcgaccgccttgtttgtacgacgcgatatcga                                     <  1:71899‑M1/130‑98 (MQ=255)                                                                                      gaggattttcagcgcCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcggccagtccctcctgcaccagtcgcgcgcgaccgccttgtttgtacgacgcgatatcga                                     <  2:684192‑M1/130‑98 (MQ=255)                                                                                          attttcaGCGCCTGTGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcggccagtccctcctgcaccagtcgcgcg                                                                    <  2:484939‑M1/99‑67 (MQ=255)                                                                                          attttcaGCGCCTGTGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcggccagtccctcctgcaccagtcgcgcg                                                                    >  1:484939‑M1/3‑35 (MQ=255)                                                                                                    ccTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaatt                                                                                       <  1:255152‑M1/72‑48 (MQ=255)                                                                                                    ccTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaatt                                                                                       >  2:255152‑M1/1‑25 (MQ=255)                                                                                                           gattgggcgccgcccgCGcggcgcttcgcgggtaaacccgctcctacgtttgtttctggccaatccctcctgtgccaggcgcgcgcgaccgccttgtttgtacgacgcgatatcgaggcgtgcgccagggggctcg                <  1:756319‑M1/130‑119 (MQ=255)                                                                                                           gattgggcgccgcccgCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaatccctcctgtgccaggcgcgcgcgaccgccttgtttgtacgacgcgatatcgaggcgtgcgccagggggctcg                <  2:337440‑M1/130‑119 (MQ=255)                                                                                                                    cggcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttctggccaatccctcctgtgccaggcgcgcgcgaccgccttgtttgtacgacgcgatatcgaggcgtgcgccagggggctcgcgtgcgcgt       <  1:173231‑M1/134‑128 (MQ=255)                                                                                                                    ccgcccgcGcggcgcttcgcgggtaaacccgctcctacgtttgtttctggccaatccctcctgtgccaggcgcgcgcgaccgccttgtttgtacgacgcgatatcgaggcgtgcgccagggggctcgcgtgcgcgt       <  1:780339‑M1/136‑128 (MQ=255)                                                                                                                    ccgcccgcGcggcgcgtcgcgggtaaacccgctcctacgtttgtttctggccaatccctcctgtgccaggcgcgcgcgaccgccttgtttgtacgacgcgatatcgaggcgtgcgccagggggctcgcgtgcgcgt       <  1:331361‑M1/136‑128 (MQ=255)                                                                                                                     cgcccgcGcggcgcttcgcgggtaaacccgctcctacgtttgtttctggccaatccctcctgtgccaggcgcgcgcgaccgccttgtttgtacgacgcgatatcgaggcgtgcgccagggggctcgcgtgcgcgtc      <  1:337024‑M1/136‑129 (MQ=255)                                                                                                                     cgcccgcGcggcgcttcgcgggtaaacccgctcctacgtttgtttctggccaatccctcctgtgccaggcgcgcgcgaccgccttgtttgtacgacgcgatatcgaggcgtgcgccagggggctcgcgtgcgcgtc      <  1:191472‑M1/136‑129 (MQ=255)                                                                                                                         ggcgcggcgcttcgcgggtaaacccgctcctacgtttgtttctggccaatccctcctgtgccaggcgcgcgcgaccgccttgtttgtacgacgcgatatcgaggcgtgcgccagggggctcgcgtgcgcgtcccac  <  1:670782‑M1/135‑133 (MQ=255)                                                                                                                            |                                                                                                                                     TTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAA  >  NC_002947/4810023‑4810278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.